mRNA_Ecto-sp8_S_contig102783.463.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig102783.463.1
Unique NamemRNA_Ecto-sp8_S_contig102783.463.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig102783.463.1 vs. uniprot
Match: D8LRB0_ECTSI (NB-ARC and TPR repeat-containig protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRB0_ECTSI)

HSP 1 Score: 165 bits (418), Expect = 2.640e-45
Identity = 90/91 (98.90%), Postives = 91/91 (100.00%), Query Frame = 1 
Query:    1 QVPENEGLDSDTTDSPLPEFLSNPDVRFEVTPGDRAALRAALERLRDALKRATISSESSFTISRSAPGLMPTANAVALSGMRMSRMSASSP 273
            QVPENEGLDSDTTDSPLPEFLSNPDVRFEVTPGDRAALRAALE+LRDALKRATISSESSFTISRSAPGLMPTANAVALSGMRMSRMSASSP
Sbjct:  172 QVPENEGLDSDTTDSPLPEFLSNPDVRFEVTPGDRAALRAALEQLRDALKRATISSESSFTISRSAPGLMPTANAVALSGMRMSRMSASSP 262
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BLAST of mRNA_Ecto-sp8_S_contig102783.463.1 vs. uniprot
Match: A0A6H5LG27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LG27_9PHAE)

HSP 1 Score: 162 bits (411), Expect = 2.340e-44
Identity = 89/91 (97.80%), Postives = 90/91 (98.90%), Query Frame = 1 
Query:    4 VPENEGLDSDTTDSPLPEFLSNPDVRFEVTPGDRAALRAALERLRDALKRATISSESSFTISRSAPGLMPTANAVALSGMRMSRMSASSPS 276
            VPENEGLDSDTTDSPLPEFLSNPDVRFEV PGDRAALRAALERLRDALK+ATISSESSFTISRSAPGLMPTANAVALSGMRMSRMSASSPS
Sbjct:  612 VPENEGLDSDTTDSPLPEFLSNPDVRFEVAPGDRAALRAALERLRDALKQATISSESSFTISRSAPGLMPTANAVALSGMRMSRMSASSPS 702
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig102783.463.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LRB0_ECTSI2.640e-4598.90NB-ARC and TPR repeat-containig protein n=1 Tax=Ec... [more]
A0A6H5LG27_9PHAE2.340e-4497.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig102783contigEcto-sp8_S_contig102783:3..311 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score170.6
Seed ortholog evalue3.7e-40
Seed eggNOG ortholog2880.D8LRB0
Model size309
KEGG koko:K10407,ko:K19360
KEGG Pathwayko05132,map05132
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.determination of stomach left/right asymmetry
EggNOG OGsCOG0457@1,KOG1840@2759
Cds size309
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko03036,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143126.647941-CDS-Ecto-sp8_S_contig102783:2..3111681143126.647941-CDS-Ecto-sp8_S_contig102783:2..311Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig102783 3..311 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig102783.463.1prot_Ecto-sp8_S_contig102783.463.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig102783 3..311 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig102783.463.1

>prot_Ecto-sp8_S_contig102783.463.1 ID=prot_Ecto-sp8_S_contig102783.463.1|Name=mRNA_Ecto-sp8_S_contig102783.463.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=103bp
QVPENEGLDSDTTDSPLPEFLSNPDVRFEVTPGDRAALRAALERLRDALK
RATISSESSFTISRSAPGLMPTANAVALSGMRMSRMSASSPSGGTVSGGD
VTG
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mRNA from alignment at Ecto-sp8_S_contig102783:3..311+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig102783.463.1 ID=mRNA_Ecto-sp8_S_contig102783.463.1|Name=mRNA_Ecto-sp8_S_contig102783.463.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=309bp|location=Sequence derived from alignment at Ecto-sp8_S_contig102783:3..311+ (Ectocarpus species8 EcLAC_412)
CAGGTGCCGGAGAACGAGGGCCTCGACTCTGACACGACGGACTCGCCGCT
CCCCGAGTTCCTGTCCAACCCGGACGTCCGTTTCGAGGTCACCCCGGGGG
ACAGGGCCGCCCTGCGGGCGGCGCTGGAGCGGCTCCGCGACGCCCTCAAG
CGGGCAACGATCAGCTCAGAGAGCAGCTTCACCATCTCCAGGTCGGCGCC
GGGCCTCATGCCCACGGCCAACGCCGTAGCCCTGTCGGGCATGCGGATGT
CTCGGATGTCGGCCTCCTCGCCAAGTGGCGGGACCGTCAGCGGGGGGGAC
GTGACTGGG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig102783:3..311+

>mRNA_Ecto-sp8_S_contig102783.463.1 ID=mRNA_Ecto-sp8_S_contig102783.463.1|Name=mRNA_Ecto-sp8_S_contig102783.463.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=309bp|location=Sequence derived from alignment at Ecto-sp8_S_contig102783:3..311+ (Ectocarpus species8 EcLAC_412)
CAGGTGCCGGAGAACGAGGGCCTCGACTCTGACACGACGGACTCGCCGCT
CCCCGAGTTCCTGTCCAACCCGGACGTCCGTTTCGAGGTCACCCCGGGGG
ACAGGGCCGCCCTGCGGGCGGCGCTGGAGCGGCTCCGCGACGCCCTCAAG
CGGGCAACGATCAGCTCAGAGAGCAGCTTCACCATCTCCAGGTCGGCGCC
GGGCCTCATGCCCACGGCCAACGCCGTAGCCCTGTCGGGCATGCGGATGT
CTCGGATGTCGGCCTCCTCGCCAAGTGGCGGGACCGTCAGCGGGGGGGAC
GTGACTGGG
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