mRNA_Ecto-sp8_S_contig102777.459.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig102777.459.1
Unique NamemRNA_Ecto-sp8_S_contig102777.459.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig102777.459.1 vs. uniprot
Match: D8LPE1_ECTSI (Hpt domain protein, EsV-1-113 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPE1_ECTSI)

HSP 1 Score: 176 bits (447), Expect = 1.920e-55
Identity = 91/109 (83.49%), Postives = 99/109 (90.83%), Query Frame = 1 
Query:    1 MENVLCVKEAVAMCDNDEKFMIEMIGLMRDDIAECLSLLAVAFNDNDSARTREIAHRVKGQAASMAAKDLMVKSKKVEYAAKNGFCTKTEYLSLVLSMKEFVRCTRDIV 327
            MENVLC++E VAMCDNDE FM EM+ LMR+DI ECLSLLA AFN+N+ ARTRE+AHRVKGQAASMAAKDLM+ SKKVE AAK GFCTKTEYLSLVLSMKEFVRCTRDIV
Sbjct:    1 MENVLCIQETVAMCDNDEIFMKEMVVLMRNDIVECLSLLAEAFNNNNPARTREVAHRVKGQAASMAAKDLMLHSKKVEDAAKIGFCTKTEYLSLVLSMKEFVRCTRDIV 109
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BLAST of mRNA_Ecto-sp8_S_contig102777.459.1 vs. uniprot
Match: Q8QNG6_ESV1K (EsV-1-113 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNG6_ESV1K)

HSP 1 Score: 171 bits (432), Expect = 3.600e-53
Identity = 84/108 (77.78%), Postives = 99/108 (91.67%), Query Frame = 1 
Query:    1 MENVLCVKEAVAMCDNDEKFMIEMIGLMRDDIAECLSLLAVAFNDNDSARTREIAHRVKGQAASMAAKDLMVKSKKVEYAAKNGFCTKTEYLSLVLSMKEFVRCTRDI 324
            ME VLCVK A+ MCDNDE+F+ EM+GLMRDDI +CLSLLA AF+DNDS+RTRE+AHRVKGQAA +AAKDL+++SKKVE AAK GFCTKTEYLSLVL+MKEFVRCT+D+
Sbjct:    1 MEKVLCVKGALEMCDNDEEFLKEMVGLMRDDIMKCLSLLAEAFDDNDSSRTREVAHRVKGQAAMLAAKDLLLQSKKVEDAAKIGFCTKTEYLSLVLNMKEFVRCTKDV 108
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig102777.459.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LPE1_ECTSI1.920e-5583.49Hpt domain protein, EsV-1-113 n=1 Tax=Ectocarpus s... [more]
Q8QNG6_ESV1K3.600e-5377.78EsV-1-113 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig102777contigEcto-sp8_S_contig102777:171..500 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size330
Hectar predicted targeting categoryother localisation
Exons1
Cds size330
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143126.3167024-CDS-Ecto-sp8_S_contig102777:170..5001681143126.3167024-CDS-Ecto-sp8_S_contig102777:170..500Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig102777 171..500 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig102777.459.1prot_Ecto-sp8_S_contig102777.459.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig102777 171..500 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig102777.459.1

>prot_Ecto-sp8_S_contig102777.459.1 ID=prot_Ecto-sp8_S_contig102777.459.1|Name=mRNA_Ecto-sp8_S_contig102777.459.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=110bp
MENVLCVKEAVAMCDNDEKFMIEMIGLMRDDIAECLSLLAVAFNDNDSAR
TREIAHRVKGQAASMAAKDLMVKSKKVEYAAKNGFCTKTEYLSLVLSMKE
FVRCTRDIV*
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mRNA from alignment at Ecto-sp8_S_contig102777:171..500-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig102777.459.1 ID=mRNA_Ecto-sp8_S_contig102777.459.1|Name=mRNA_Ecto-sp8_S_contig102777.459.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=330bp|location=Sequence derived from alignment at Ecto-sp8_S_contig102777:171..500- (Ectocarpus species8 EcLAC_412)
ATGGAAAACGTTTTGTGCGTGAAAGAAGCTGTTGCGATGTGCGATAACGA
CGAGAAATTCATGATAGAAATGATCGGCCTCATGCGCGACGACATTGCGG
AGTGCCTGTCGTTGTTGGCAGTGGCCTTCAACGACAACGATTCGGCCCGG
ACAAGAGAGATCGCTCACAGAGTAAAGGGACAAGCGGCTAGCATGGCCGC
GAAGGACTTGATGGTAAAATCCAAAAAGGTCGAATATGCCGCGAAAAATG
GTTTTTGTACCAAAACAGAGTACCTGAGCTTGGTTTTGAGTATGAAGGAG
TTTGTCCGGTGCACAAGAGACATTGTTTGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig102777:171..500-

>mRNA_Ecto-sp8_S_contig102777.459.1 ID=mRNA_Ecto-sp8_S_contig102777.459.1|Name=mRNA_Ecto-sp8_S_contig102777.459.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=330bp|location=Sequence derived from alignment at Ecto-sp8_S_contig102777:171..500- (Ectocarpus species8 EcLAC_412)
ATGGAAAACGTTTTGTGCGTGAAAGAAGCTGTTGCGATGTGCGATAACGA
CGAGAAATTCATGATAGAAATGATCGGCCTCATGCGCGACGACATTGCGG
AGTGCCTGTCGTTGTTGGCAGTGGCCTTCAACGACAACGATTCGGCCCGG
ACAAGAGAGATCGCTCACAGAGTAAAGGGACAAGCGGCTAGCATGGCCGC
GAAGGACTTGATGGTAAAATCCAAAAAGGTCGAATATGCCGCGAAAAATG
GTTTTTGTACCAAAACAGAGTACCTGAGCTTGGTTTTGAGTATGAAGGAG
TTTGTCCGGTGCACAAGAGACATTGTTTGA
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