mRNA_Ecto-sp8_S_contig10276.458.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10276.458.1
Unique NamemRNA_Ecto-sp8_S_contig10276.458.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10276.458.1 vs. uniprot
Match: A0A6H5KV05_9PHAE (2Fe-2S ferredoxin-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KV05_9PHAE)

HSP 1 Score: 191 bits (485), Expect = 1.150e-60
Identity = 94/96 (97.92%), Postives = 95/96 (98.96%), Query Frame = 1 
Query:    7 QHEGTSTVLEVDENTTILEAALDNDIDLPHDCKLGVCLTCPSKVVSGEVDQGDGTLEDSVTALGYALTCCTYARSDVTIRSVEEDELVGAQFSDRS 294
            +HEGTSTVLEVDENTTILEAALDNDIDLPHDCKLGVCLTCPSKVVSGEVDQ DGTLEDSVTALGYALTCCTYARSDVTIRSVEEDELVGAQFSDRS
Sbjct:   69 EHEGTSTVLEVDENTTILEAALDNDIDLPHDCKLGVCLTCPSKVVSGEVDQSDGTLEDSVTALGYALTCCTYARSDVTIRSVEEDELVGAQFSDRS 164
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BLAST of mRNA_Ecto-sp8_S_contig10276.458.1 vs. uniprot
Match: A0A7S3UW21_HETAK (Ferredoxin n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UW21_HETAK)

HSP 1 Score: 154 bits (388), Expect = 3.370e-46
Identity = 80/102 (78.43%), Postives = 85/102 (83.33%), Query Frame = 1 
Query:    1 AHQ----HEGTSTVLEVDENTTILEAALDNDIDLPHDCKLGVCLTCPSKVVSGEVDQGDGTLEDSVTALGYALTCCTYARSDVTIRSVEEDELVGAQFSDRS 294
            AHQ    HEGT+TVLEV E T+IL+AALD  IDLPHDCKLGVCLTCPSKVVSGEVDQ DGTLEDSVTA GYALTC T+ RSD TI S+ EDELV AQFS RS
Sbjct:   41 AHQVTIEHEGTTTVLEVPEYTSILDAALDAGIDLPHDCKLGVCLTCPSKVVSGEVDQSDGTLEDSVTAQGYALTCMTFPRSDCTIMSITEDELVDAQFSGRS 142
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BLAST of mRNA_Ecto-sp8_S_contig10276.458.1 vs. uniprot
Match: A0A7S2V4F7_9STRA (Ferredoxin n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4F7_9STRA)

HSP 1 Score: 150 bits (379), Expect = 1.110e-44
Identity = 72/95 (75.79%), Postives = 82/95 (86.32%), Query Frame = 1 
Query:    7 QHEGTSTVLEVDENTTILEAALDNDIDLPHDCKLGVCLTCPSKVVSGEVDQGDGTLEDSVTALGYALTCCTYARSDVTIRSVEEDELVGAQFSDR 291
            QHEG  TVLEVDE+TTILEAALD  IDLPHDC+LGVCLTCPS++VSGEVDQG GTL+DSV   G+ALTC +Y RSD  +RSVEEDE+V AQF+DR
Sbjct:   56 QHEGKDTVLEVDESTTILEAALDAGIDLPHDCQLGVCLTCPSRIVSGEVDQGMGTLDDSVVEQGFALTCISYPRSDCVVRSVEEDEMVNAQFADR 150
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BLAST of mRNA_Ecto-sp8_S_contig10276.458.1 vs. uniprot
Match: A0A836CGC2_9STRA (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGC2_9STRA)

HSP 1 Score: 137 bits (345), Expect = 1.740e-39
Identity = 65/92 (70.65%), Postives = 76/92 (82.61%), Query Frame = 1 
Query:   16 GTSTVLEVDENTTILEAALDNDIDLPHDCKLGVCLTCPSKVVSGEVDQGDGTLEDSVTALGYALTCCTYARSDVTIRSVEEDELVGAQFSDR 291
            G S  LEVDE T++LEAALD  I+LPHDCKLGVCLTCPSK+VSGEVDQ   TL+DSV   GYALTCC++ RSD+ IR+++EDELVGAQF  R
Sbjct:   63 GKSHTLEVDEKTSVLEAALDAGIELPHDCKLGVCLTCPSKIVSGEVDQDGTTLDDSVVEQGYALTCCSFPRSDLVIRAIDEDELVGAQFEGR 154
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BLAST of mRNA_Ecto-sp8_S_contig10276.458.1 vs. uniprot
Match: A0A482SDV3_9ARCH (2Fe-2S iron-sulfur cluster binding domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SDV3_9ARCH)

HSP 1 Score: 136 bits (343), Expect = 2.440e-39
Identity = 66/96 (68.75%), Postives = 77/96 (80.21%), Query Frame = 1 
Query:    7 QHEGTSTVLEVDENTTILEAALDNDIDLPHDCKLGVCLTCPSKVVSGEVDQGDGTLEDSVTALGYALTCCTYARSDVTIRSVEEDELVGAQFSDRS 294
            QHEG  T+L+V ++ +IL AALD  IDLPHDCKLGVCLTCPSK+VSG+VDQ DGTL  SV A GYALTC ++  SDV +RS+EEDELV AQFS  S
Sbjct:   48 QHEGKDTILDVQDDCSILNAALDAGIDLPHDCKLGVCLTCPSKIVSGKVDQSDGTLAKSVQAKGYALTCVSFPCSDVVVRSIEEDELVSAQFSRNS 143
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BLAST of mRNA_Ecto-sp8_S_contig10276.458.1 vs. uniprot
Match: A0A8J5WV81_ZIZPA (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5WV81_ZIZPA)

HSP 1 Score: 122 bits (305), Expect = 1.500e-33
Identity = 56/93 (60.22%), Postives = 71/93 (76.34%), Query Frame = 1 
Query:    7 QHEGTSTVLEVDENTTILEAALDNDIDLPHDCKLGVCLTCPSKVVSGEVDQGDGTLEDSVTALGYALTCCTYARSDVTIRSVEEDELVGAQFS 285
            +H G S V+EV+E+ TILE ALD  ID+PHDCKLGVC+TCP+++V+G+VDQ DG L D V A GYAL C +Y RSD TIR + EDEL+  Q +
Sbjct:   48 EHAGESRVVEVEEHETILERALDEGIDVPHDCKLGVCMTCPARLVAGQVDQSDGMLSDDVVAQGYALLCASYPRSDCTIRVIPEDELLQVQLA 140
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10276.458.1 vs. uniprot
Match: A0A0D9VX35_9ORYZ (Ferredoxin n=1 Tax=Leersia perrieri TaxID=77586 RepID=A0A0D9VX35_9ORYZ)

HSP 1 Score: 121 bits (304), Expect = 2.190e-33
Identity = 56/93 (60.22%), Postives = 71/93 (76.34%), Query Frame = 1 
Query:    7 QHEGTSTVLEVDENTTILEAALDNDIDLPHDCKLGVCLTCPSKVVSGEVDQGDGTLEDSVTALGYALTCCTYARSDVTIRSVEEDELVGAQFS 285
            +H G S V+EV+E+ TIL  ALD  ID+PHDCKLGVC+TCP+++V+GEVDQGDG L D V A GYAL C +Y RSD TIR + E+EL+  Q +
Sbjct:   49 EHGGESRVVEVEEDETILSRALDEGIDVPHDCKLGVCMTCPARLVAGEVDQGDGMLSDDVVAQGYALLCASYPRSDCTIRVIPEEELLQVQLA 141
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10276.458.1 vs. uniprot
Match: UPI001263B9F0 (ferredoxin C 1, chloroplastic n=1 Tax=Pistacia vera TaxID=55513 RepID=UPI001263B9F0)

HSP 1 Score: 120 bits (302), Expect = 5.390e-33
Identity = 54/93 (58.06%), Postives = 70/93 (75.27%), Query Frame = 1 
Query:    7 QHEGTSTVLEVDENTTILEAALDNDIDLPHDCKLGVCLTCPSKVVSGEVDQGDGTLEDSVTALGYALTCCTYARSDVTIRSVEEDELVGAQFS 285
            +HEG ST LEV+ + TIL  ALD+ +D+PHDCKLGVC+TCP+K++SG VDQ DG L D V   GYAL C +Y RSD TI+++ EDEL+  Q +
Sbjct:   56 EHEGASTELEVEPDETILSKALDSGLDVPHDCKLGVCMTCPAKLISGSVDQSDGMLSDDVVERGYALLCASYPRSDCTIKTIPEDELLSLQLA 148
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10276.458.1 vs. uniprot
Match: Q850T5_ORYSJ (Ferredoxin n=11 Tax=Oryza TaxID=4527 RepID=Q850T5_ORYSJ)

HSP 1 Score: 120 bits (301), Expect = 6.610e-33
Identity = 56/93 (60.22%), Postives = 69/93 (74.19%), Query Frame = 1 
Query:    7 QHEGTSTVLEVDENTTILEAALDNDIDLPHDCKLGVCLTCPSKVVSGEVDQGDGTLEDSVTALGYALTCCTYARSDVTIRSVEEDELVGAQFS 285
            +H G S V+EV+E  TIL  ALD  ID+PHDCKLGVC+TCP+++V+GEVDQ DG L D V A GYAL C +Y RSD TIR + EDEL+  Q +
Sbjct:   51 EHGGESRVVEVEEGETILSRALDEGIDVPHDCKLGVCMTCPARLVAGEVDQSDGMLSDDVVAQGYALLCASYPRSDCTIRVIPEDELLKVQLA 143
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10276.458.1 vs. uniprot
Match: UPI001CFAA093 (ferredoxin C 1, chloroplastic n=1 Tax=Mangifera indica TaxID=29780 RepID=UPI001CFAA093)

HSP 1 Score: 120 bits (300), Expect = 1.120e-32
Identity = 55/93 (59.14%), Postives = 69/93 (74.19%), Query Frame = 1 
Query:    7 QHEGTSTVLEVDENTTILEAALDNDIDLPHDCKLGVCLTCPSKVVSGEVDQGDGTLEDSVTALGYALTCCTYARSDVTIRSVEEDELVGAQFS 285
            +HEG ST LEVD + TIL  ALD+ +++PHDCKLGVC+TCP+K+VSG VDQ DG L D V   GYAL C  Y RSD TI+++ EDEL+  Q +
Sbjct:   57 EHEGESTELEVDPDETILSKALDSGLNVPHDCKLGVCMTCPAKLVSGSVDQSDGMLSDDVVERGYALLCAAYPRSDCTIKTIPEDELLSLQLA 149
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10276.458.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KV05_9PHAE1.150e-6097.922Fe-2S ferredoxin-type domain-containing protein n... [more]
A0A7S3UW21_HETAK3.370e-4678.43Ferredoxin n=1 Tax=Heterosigma akashiwo TaxID=2829... [more]
A0A7S2V4F7_9STRA1.110e-4475.79Ferredoxin n=1 Tax=Fibrocapsa japonica TaxID=94617... [more]
A0A836CGC2_9STRA1.740e-3970.652Fe-2S ferredoxin-type domain-containing protein n... [more]
A0A482SDV3_9ARCH2.440e-3968.752Fe-2S iron-sulfur cluster binding domain-containi... [more]
A0A8J5WV81_ZIZPA1.500e-3360.222Fe-2S ferredoxin-type domain-containing protein n... [more]
A0A0D9VX35_9ORYZ2.190e-3360.22Ferredoxin n=1 Tax=Leersia perrieri TaxID=77586 Re... [more]
UPI001263B9F05.390e-3358.06ferredoxin C 1, chloroplastic n=1 Tax=Pistacia ver... [more]
Q850T5_ORYSJ6.610e-3360.22Ferredoxin n=11 Tax=Oryza TaxID=4527 RepID=Q850T5_... [more]
UPI001CFAA0931.120e-3259.14ferredoxin C 1, chloroplastic n=1 Tax=Mangifera in... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10276contigEcto-sp8_S_contig10276:5273..6091 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score193.0
Seed ortholog evalue6.8e-47
Seed eggNOG ortholog2880.D7G156
Model size297
KEGG koko:K02639
KEGG Pathwayko00195,map00195
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006091,GO:0008150,GO:0008152,GO:0009055,GO:0009314,GO:0009416,GO:0009507,GO:0009536,GO:0009628,GO:0009642,GO:0009644,GO:0009987,GO:0016491,GO:0022900,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044424,GO:0044444,GO:0044464,GO:0048037,GO:0050896,GO:0051536,GO:0051537,GO:0051540,GO:0055114
Exons2
EggNOG free text desc.2 iron, 2 sulfur cluster binding
EggNOG OGs2RZRG@2759,COG0633@1
Cds size297
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00194
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143126.264243-CDS-Ecto-sp8_S_contig10276:5272..53741681143126.264243-CDS-Ecto-sp8_S_contig10276:5272..5374Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10276 5273..5374 -
1681143126.2822464-CDS-Ecto-sp8_S_contig10276:5896..60911681143126.2822464-CDS-Ecto-sp8_S_contig10276:5896..6091Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10276 5897..6091 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10276.458.1prot_Ecto-sp8_S_contig10276.458.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10276 5273..6091 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10276.458.1

>prot_Ecto-sp8_S_contig10276.458.1 ID=prot_Ecto-sp8_S_contig10276.458.1|Name=mRNA_Ecto-sp8_S_contig10276.458.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=99bp
AHQHEGTSTVLEVDENTTILEAALDNDIDLPHDCKLGVCLTCPSKVVSGE
VDQGDGTLEDSVTALGYALTCCTYARSDVTIRSVEEDELVGAQFSDRS*
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mRNA from alignment at Ecto-sp8_S_contig10276:5273..6091-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10276.458.1 ID=mRNA_Ecto-sp8_S_contig10276.458.1|Name=mRNA_Ecto-sp8_S_contig10276.458.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=819bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10276:5273..6091- (Ectocarpus species8 EcLAC_412)
GCGCACCAGCACGAGGGAACGTCCACCGTGCTGGAGGTGGACGAGAACAC
CACCATCCTTGAGGCCGCCCTCGACAACGACATCGACCTTCCGCACGACT
GCAAGCTCGGCGTGTGCCTGACGTGCCCCTCTAAGGTTGTGAGCGGGGAG
GTGGACCAGGGCGACGGGACGCTGGAGGACAGCGTCACGGCGCTGGTGGG
TGGACGTTTTTTTGTTTCTGTTCCTTCTGCTGTGGCTGCTATGTTGGTCG
TTGGTGATGCTGCGTTGTGTTCTGCCGTTTTTCTTTTTTGGATAATGAAA
TACACGGGGGCGTCAGATATGGCATGTTCGTTTACACGTTGTTCTCAGAG
TCGAAACGAGAATCACTCTAAACCTGACTCGACTCCCTTCTTAATGGTAC
GGGCGACATTGGCGTGGAACACATACGGGTGGCAATAATGGCTCAATTGT
TTCTCGAGGAGGACACATGGCATCATTGATTCGTTGTCGGCCATCCTCAC
CTGATCATTCTTGCGGCGCATGTCTGGAGACTGATTGGTTGGTGTTGGTT
GCTCGGCAACAGCAGTGTCTACAAAGTTGTCTTCCTCCCGTGTTTCAGCA
TGTGCATGCCATGGACGTCATCTTGCGTTTGTTTCCCCGCAAGCACCCCG
CTCATACCGGTCTCGCGCTCGCTGTTCTTACTCGGCTCGTACACACGCTA
TCTGAAAATCATGACAGGGATACGCGCTGACGTGCTGCACGTACGCCAGG
TCGGACGTGACGATCCGATCGGTAGAAGAGGACGAACTCGTCGGCGCCCA
GTTCAGCGATCGATCATAA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10276:5273..6091-

>mRNA_Ecto-sp8_S_contig10276.458.1 ID=mRNA_Ecto-sp8_S_contig10276.458.1|Name=mRNA_Ecto-sp8_S_contig10276.458.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=297bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10276:5273..6091- (Ectocarpus species8 EcLAC_412)
GCGCACCAGCACGAGGGAACGTCCACCGTGCTGGAGGTGGACGAGAACAC
CACCATCCTTGAGGCCGCCCTCGACAACGACATCGACCTTCCGCACGACT
GCAAGCTCGGCGTGTGCCTGACGTGCCCCTCTAAGGTTGTGAGCGGGGAG
GTGGACCAGGGCGACGGGACGCTGGAGGACAGCGTCACGGCGCTGGGATA
CGCGCTGACGTGCTGCACGTACGCCAGGTCGGACGTGACGATCCGATCGG
TAGAAGAGGACGAACTCGTCGGCGCCCAGTTCAGCGATCGATCATAA
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