mRNA_Ecto-sp8_S_contig102755.456.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig102755.456.1
Unique NamemRNA_Ecto-sp8_S_contig102755.456.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig102755.456.1 vs. uniprot
Match: D8LFJ6_ECTSI (DRIM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFJ6_ECTSI)

HSP 1 Score: 163 bits (412), Expect = 1.130e-44
Identity = 86/91 (94.51%), Postives = 87/91 (95.60%), Query Frame = 1 
Query:    1 HPALALARSLLGGVGAERTANKPPPMRVTRAVALRPLLEACSGPLSGQAGVALEVLVRVIHGSGVGLVFAGDKVGAIGARRRAEDGRDDDE 273
            HPALALARSLLGGVGAERT NKPPPMRVTRAVALRPLLEACSGPLSGQAGVALEVLVRVIHG+GVGLVFAGDKV  IGARRRAE GRDDDE
Sbjct:  522 HPALALARSLLGGVGAERTENKPPPMRVTRAVALRPLLEACSGPLSGQAGVALEVLVRVIHGTGVGLVFAGDKVRGIGARRRAEVGRDDDE 612
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BLAST of mRNA_Ecto-sp8_S_contig102755.456.1 vs. uniprot
Match: A0A6H5JFX0_9PHAE (DRIM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFX0_9PHAE)

HSP 1 Score: 154 bits (388), Expect = 1.950e-41
Identity = 83/93 (89.25%), Postives = 85/93 (91.40%), Query Frame = 1 
Query:    1 HPALALARSLLGGVGAERTANKPPPMRVTRAVALRPLLEACSGPLSGQAGVALEVLVRVIHGSGVGLVFAGDKVGAIGARRRAEDGRDDDESE 279
            HPALAL+RSLLGGVGAERT NKPPPMRVTRAVAL PLLEACSGPLSGQAGVALEVLVRVIHG+GVGLVFAGDKV  IGA RRAE  RDDD SE
Sbjct:  543 HPALALSRSLLGGVGAERTENKPPPMRVTRAVALPPLLEACSGPLSGQAGVALEVLVRVIHGTGVGLVFAGDKVSGIGAGRRAEVCRDDDLSE 635
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig102755.456.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LFJ6_ECTSI1.130e-4494.51DRIM domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JFX0_9PHAE1.950e-4189.25DRIM domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig102755contigEcto-sp8_S_contig102755:184..463 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score165.6
Seed ortholog evalue1.1e-38
Seed eggNOG ortholog2880.D8LFJ6
Model size281
KEGG koko:K14772,ko:K16569
Hectar predicted targeting categorysignal peptide
GOsGO:0000166,GO:0000287,GO:0003674,GO:0005488,GO:0005515,GO:0005524,GO:0008144,GO:0017076,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0033218,GO:0035639,GO:0036094,GO:0042277,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043169,GO:0043295,GO:0046872,GO:0046983,GO:0048037,GO:0072341,GO:0097159,GO:0097367,GO:1900750,GO:1901265,GO:1901363,GO:1901681
Exons1
EggNOG free text desc.maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
EggNOG OGsKOG1823@1,KOG1823@2759
Ec32 ortholog descriptionArmadillo-type fold
Ec32 orthologEc-04_001970.5
Cds size279
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009,ko03036,ko04147,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143126.1627896-CDS-Ecto-sp8_S_contig102755:183..4621681143126.1627896-CDS-Ecto-sp8_S_contig102755:183..462Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig102755 184..462 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig102755.456.1prot_Ecto-sp8_S_contig102755.456.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig102755 184..462 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig102755.456.1

>prot_Ecto-sp8_S_contig102755.456.1 ID=prot_Ecto-sp8_S_contig102755.456.1|Name=mRNA_Ecto-sp8_S_contig102755.456.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=93bp
HPALALARSLLGGVGAERTANKPPPMRVTRAVALRPLLEACSGPLSGQAG
VALEVLVRVIHGSGVGLVFAGDKVGAIGARRRAEDGRDDDESE
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mRNA from alignment at Ecto-sp8_S_contig102755:184..463+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig102755.456.1 ID=mRNA_Ecto-sp8_S_contig102755.456.1|Name=mRNA_Ecto-sp8_S_contig102755.456.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=280bp|location=Sequence derived from alignment at Ecto-sp8_S_contig102755:184..463+ (Ectocarpus species8 EcLAC_412)
CACCCGGCGCTGGCGCTGGCGCGGTCTCTCCTCGGCGGAGTCGGTGCCGA
GCGCACGGCGAACAAGCCCCCGCCCATGCGCGTGACCCGCGCGGTCGCCC
TCCGCCCCCTCCTGGAGGCGTGTTCGGGGCCTCTGTCCGGGCAGGCGGGG
GTCGCCCTCGAGGTGCTGGTGCGAGTGATTCACGGCTCTGGGGTGGGGCT
GGTGTTTGCAGGAGACAAGGTCGGAGCCATCGGGGCAAGGAGACGCGCGG
AAGACGGCCGTGATGACGACGAAAGCGAGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig102755:184..463+

>mRNA_Ecto-sp8_S_contig102755.456.1 ID=mRNA_Ecto-sp8_S_contig102755.456.1|Name=mRNA_Ecto-sp8_S_contig102755.456.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=279bp|location=Sequence derived from alignment at Ecto-sp8_S_contig102755:184..463+ (Ectocarpus species8 EcLAC_412)
CACCCGGCGCTGGCGCTGGCGCGGTCTCTCCTCGGCGGAGTCGGTGCCGA
GCGCACGGCGAACAAGCCCCCGCCCATGCGCGTGACCCGCGCGGTCGCCC
TCCGCCCCCTCCTGGAGGCGTGTTCGGGGCCTCTGTCCGGGCAGGCGGGG
GTCGCCCTCGAGGTGCTGGTGCGAGTGATTCACGGCTCTGGGGTGGGGCT
GGTGTTTGCAGGAGACAAGGTCGGAGCCATCGGGGCAAGGAGACGCGCGG
AAGACGGCCGTGATGACGACGAAAGCGAG
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