mRNA_Ecto-sp8_S_contig1027.453.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig1027.453.1
Unique NamemRNA_Ecto-sp8_S_contig1027.453.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig1027.453.1 vs. uniprot
Match: D8LNH9_ECTSI (CRAL-TRIO domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNH9_ECTSI)

HSP 1 Score: 164 bits (414), Expect = 9.750e-51
Identity = 76/77 (98.70%), Postives = 76/77 (98.70%), Query Frame = 1
Query:    1 MSPQRSTHLLLLSWPRWFDWIFRFIRPLLSESTKSKMTSCTANSVYETLLSKIDNDQIPKEYGGASEYALGEHPYET 231
            MSPQRSTHLLLLSWPRWFDWIFRFIRPLLSESTKSKMTSCTANSVYETLLSKIDNDQIPKEYGGASEYALGEHPYE 
Sbjct:    1 MSPQRSTHLLLLSWPRWFDWIFRFIRPLLSESTKSKMTSCTANSVYETLLSKIDNDQIPKEYGGASEYALGEHPYEV 77          
BLAST of mRNA_Ecto-sp8_S_contig1027.453.1 vs. uniprot
Match: D7G352_ECTSI (Phosphatidylinositol transfer protein SEC14 and related proteins n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G352_ECTSI)

HSP 1 Score: 160 bits (406), Expect = 6.280e-46
Identity = 78/90 (86.67%), Postives = 81/90 (90.00%), Query Frame = 1
Query:   10 QRSTHLLLLSWPRWFDWIFRFIRPLLSESTKSKMTSCTANSVYETLLSKIDNDQIPKEYGGASEYALGEHPYE--TRVVRYLRGRLVEGG 273
            QRS HLLLLSWPRWFDWI+RFIRPLLSESTKSKMTSCTANSVYETLLSKIDNDQIPKEYGGASEYALGEHPYE  T  V +  GR+VE G
Sbjct:  298 QRSAHLLLLSWPRWFDWIYRFIRPLLSESTKSKMTSCTANSVYETLLSKIDNDQIPKEYGGASEYALGEHPYESDTEFVWHFLGRIVEVG 387          
BLAST of mRNA_Ecto-sp8_S_contig1027.453.1 vs. uniprot
Match: A0A6H5K175_9PHAE (CRAL-TRIO domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K175_9PHAE)

HSP 1 Score: 160 bits (404), Expect = 1.710e-43
Identity = 76/85 (89.41%), Postives = 77/85 (90.59%), Query Frame = 1
Query:    7 PQRSTHLLLLSWPRWFDWIFRFIRPLLSESTKSKMTSCTANSVYETLLSKIDNDQIPKEYGGASEYALGEHPYETRVVRYLRGRL 261
            P+RSTHLLLLSWPRWFDWIFRFIRPLLSESTKSKMTSCTANSVYETLLSKIDNDQIPKEYGGASEYALGEHPYE   V    G L
Sbjct:  856 PERSTHLLLLSWPRWFDWIFRFIRPLLSESTKSKMTSCTANSVYETLLSKIDNDQIPKEYGGASEYALGEHPYEAIEVDMRNGAL 940          
BLAST of mRNA_Ecto-sp8_S_contig1027.453.1 vs. uniprot
Match: A0A6H5LC05_9PHAE (CRAL-TRIO domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LC05_9PHAE)

HSP 1 Score: 154 bits (389), Expect = 5.330e-42
Identity = 69/75 (92.00%), Postives = 73/75 (97.33%), Query Frame = 1
Query:    7 PQRSTHLLLLSWPRWFDWIFRFIRPLLSESTKSKMTSCTANSVYETLLSKIDNDQIPKEYGGASEYALGEHPYET 231
            P+RS HL+LLSWPRWFDWI+RFIRPL+SESTKSKMTSCTANSVYETLLSKIDNDQIPKEYGGASEYALGEHPYE 
Sbjct:  523 PERSAHLMLLSWPRWFDWIYRFIRPLISESTKSKMTSCTANSVYETLLSKIDNDQIPKEYGGASEYALGEHPYEV 597          
BLAST of mRNA_Ecto-sp8_S_contig1027.453.1 vs. uniprot
Match: D8LL64_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL64_ECTSI)

HSP 1 Score: 120 bits (301), Expect = 6.530e-34
Identity = 59/66 (89.39%), Postives = 61/66 (92.42%), Query Frame = 1
Query:  109 MTSCTANSVYETLLSKIDNDQIPKEYGGASEYALGEHPYE--TRVVRYLRGRLVEGGALERFRPVL 300
            MTSCTANSVYETLLSKIDNDQIPKEYGGASEYALGEHPYE  TR VRY+RG + EGGALERFRPVL
Sbjct:    1 MTSCTANSVYETLLSKIDNDQIPKEYGGASEYALGEHPYEGDTRFVRYMRGWIAEGGALERFRPVL 66          
BLAST of mRNA_Ecto-sp8_S_contig1027.453.1 vs. uniprot
Match: A0A7S1UMG2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UMG2_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 1.180e-8
Identity = 35/76 (46.05%), Postives = 43/76 (56.58%), Query Frame = 1
Query:    7 PQRSTHLLLLSWPRWFDWIFRFIRPLLSESTKSKMTSCTANSVYETLLSK-IDNDQIPKEYGGASEYALGEHPYET 231
            P       L++ P W    F   R +L ES K  + S    S   T L K ID++QIPKEYGG+S+YALGEHPYE 
Sbjct:  528 PMAMKRAFLVNSPWWLAGAFSGFRSILPESVKVDILS---ESQSVTALRKFIDDNQIPKEYGGSSQYALGEHPYEV 600          
BLAST of mRNA_Ecto-sp8_S_contig1027.453.1 vs. uniprot
Match: A0A7S1ZXQ5_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZXQ5_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 9.420e-7
Identity = 27/79 (34.18%), Postives = 39/79 (49.37%), Query Frame = 1
Query:    7 PQRSTHLLLLSWPRWFDWIFRFIRPLLSESTKSKMTSCTANSVYETLLSKIDNDQIPKEYGGASEYALGEHPYETRVVR 243
            P       + + P W    + +    L ES    M S + ++    L   +D+DQIPKEYGG+S Y LGEHP E  + +
Sbjct:  285 PMNVKRACIANIPFWLAGSYSYANRFLPESVAVSMMSSSKSAAEGGLRDFVDDDQIPKEYGGSSPYKLGEHPLEIELCK 363          
BLAST of mRNA_Ecto-sp8_S_contig1027.453.1 vs. uniprot
Match: B8CAC2_THAPS (Phosphatidylinositol/phosphatidylcholine transfer protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CAC2_THAPS)

HSP 1 Score: 51.2 bits (121), Expect = 2.660e-5
Identity = 27/78 (34.62%), Postives = 44/78 (56.41%), Query Frame = 1
Query:    7 PQRSTHLLLLSWPRWFDWIFRFIRPLLSESTKSKMTSCTAN----SVYETLLSKIDNDQIPKEYGGASEYALGEHPYE 228
            P+R+  + +L+ P +F  I+R I+PL+   T  K+     N    ++ + L+ +I    IP+EYGG S+Y LG  P E
Sbjct:  239 PERAGTIYILNSPPFFQVIWRMIKPLVDPVTLDKVRVVQNNQGHFAIRDALMERIPIQNIPREYGGESQYMLGGAPEE 316          
BLAST of mRNA_Ecto-sp8_S_contig1027.453.1 vs. uniprot
Match: A0A7S1DB15_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1DB15_CYCTE)

HSP 1 Score: 50.4 bits (119), Expect = 5.160e-5
Identity = 20/24 (83.33%), Postives = 23/24 (95.83%), Query Frame = 1
Query:  157 IDNDQIPKEYGGASEYALGEHPYE 228
            ID+DQIPK+YGG+S YALGEHPYE
Sbjct:   17 IDDDQIPKQYGGSSPYALGEHPYE 40          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig1027.453.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D8LNH9_ECTSI9.750e-5198.70CRAL-TRIO domain-containing protein n=1 Tax=Ectoca... [more]
D7G352_ECTSI6.280e-4686.67Phosphatidylinositol transfer protein SEC14 and re... [more]
A0A6H5K175_9PHAE1.710e-4389.41CRAL-TRIO domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5LC05_9PHAE5.330e-4292.00CRAL-TRIO domain-containing protein n=1 Tax=Ectoca... [more]
D8LL64_ECTSI6.530e-3489.39Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S1UMG2_9STRA1.180e-846.05Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
A0A7S1ZXQ5_9STRA9.420e-734.18Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
B8CAC2_THAPS2.660e-534.62Phosphatidylinositol/phosphatidylcholine transfer ... [more]
A0A7S1DB15_CYCTE5.160e-583.33Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig1027contigEcto-sp8_S_contig1027:15841..16794 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score65.5
Seed ortholog evalue1.6e-08
Seed eggNOG ortholog157072.XP_008860831.1
Model size300
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.macromolecule localization
EggNOG OGsKOG1471@1,KOG1471@2759
Ec32 ortholog descriptionCRAL-TRIO domain
Ec32 orthologEc-24_002880.1
Cds size300
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143125.9948375-CDS-Ecto-sp8_S_contig1027:15840..159121681143125.9948375-CDS-Ecto-sp8_S_contig1027:15840..15912Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1027 15841..15912 -
1681143126.0062146-CDS-Ecto-sp8_S_contig1027:16152..162721681143126.0062146-CDS-Ecto-sp8_S_contig1027:16152..16272Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1027 16153..16272 -
1681143126.017447-CDS-Ecto-sp8_S_contig1027:16686..167941681143126.017447-CDS-Ecto-sp8_S_contig1027:16686..16794Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1027 16687..16794 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig1027.453.1prot_Ecto-sp8_S_contig1027.453.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig1027 15841..16794 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig1027.453.1

>prot_Ecto-sp8_S_contig1027.453.1 ID=prot_Ecto-sp8_S_contig1027.453.1|Name=mRNA_Ecto-sp8_S_contig1027.453.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=100bp
MSPQRSTHLLLLSWPRWFDWIFRFIRPLLSESTKSKMTSCTANSVYETLL
SKIDNDQIPKEYGGASEYALGEHPYETRVVRYLRGRLVEGGALERFRPVL
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mRNA from alignment at Ecto-sp8_S_contig1027:15841..16794-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig1027.453.1 ID=mRNA_Ecto-sp8_S_contig1027.453.1|Name=mRNA_Ecto-sp8_S_contig1027.453.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=954bp|location=Sequence derived from alignment at Ecto-sp8_S_contig1027:15841..16794- (Ectocarpus species8 EcLAC_412)
ATGTCTCCGCAGCGATCGACGCATCTGCTGCTCCTCAGCTGGCCCCGATG GTTCGACTGGATATTCCGCTTCATCCGACCTCTCCTTTCAGAGTCCACCA AGAGCAAGGTGAGCTCTTTTTTTTATTTTTATTTTTTATATGTCTTTCAG AGTCCACCAAGAGCAAGGTGAGCATTTTTTTTTTTTCTTTCAATATTTGA GGGAGTGTTAAAAATTGATGTACTTCACAAAGACCACGTTTTTTTTTTCT TTTTTTCTTGTAATTGAAACTCCGTCGGGAGAAATCTGTGCGAAAGTCTT TCATACTCAGCGCCTGACGGCAGCTGCAAATATTGTTCTCTATCCGATGT TTGTGTGTGTGTTCGACGCAATACAAGGCAGGAATGCTCTCCAACCCCAT GTGTTCGTGGGTGTGTTCGCCGCTCTTAGAGCATGTCGTCCTGGTATCTG CCTCCCGTGCACTCCCAACGACCTAAATTAACTCCAACCCACGGCTGGTC ATTCGTTCTACTGCTGTGTCAGATGACGTCTTGCACGGCGAACAGCGTGT ACGAGACGCTCCTGTCGAAGATCGACAACGACCAGATCCCCAAGGAGTAC GGAGGGGCGTCCGAGTACGCGCTTGGGGAACACCCTTACGAGGTAAGTTT AAGTCTTTAATACCACGCTCTTCATAGTGTGTAATTCTTTCCCCCCCCCC ATGTAACCTTATCTATCGGAGGGTGACACGTGGTTTGTATGACACTTGCG AGACTGAATAGTAGAGGTAGGTCTATCGTGTGTGCGCGGTAAAAGTGGCC CGTGGCAATTTTTGTACCACTCTTAGTAGCGTGTAGTTCATAGTTTACCC CCCGATGTACCGTCAATCTATCGGGGGGTGAGACGAGAGTTGTACGCTAC TTACGAGGCCGGCTAGTAGAGGGGGGAGCTTTGGAACGGTTTCGGCCTGT GCTT
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig1027:15841..16794-

>mRNA_Ecto-sp8_S_contig1027.453.1 ID=mRNA_Ecto-sp8_S_contig1027.453.1|Name=mRNA_Ecto-sp8_S_contig1027.453.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=300bp|location=Sequence derived from alignment at Ecto-sp8_S_contig1027:15841..16794- (Ectocarpus species8 EcLAC_412)
ATGTCTCCGCAGCGATCGACGCATCTGCTGCTCCTCAGCTGGCCCCGATG
GTTCGACTGGATATTCCGCTTCATCCGACCTCTCCTTTCAGAGTCCACCA
AGAGCAAGATGACGTCTTGCACGGCGAACAGCGTGTACGAGACGCTCCTG
TCGAAGATCGACAACGACCAGATCCCCAAGGAGTACGGAGGGGCGTCCGA
GTACGCGCTTGGGGAACACCCTTACGAGACGAGAGTTGTACGCTACTTAC
GAGGCCGGCTAGTAGAGGGGGGAGCTTTGGAACGGTTTCGGCCTGTGCTT
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