mRNA_Ecto-sp8_S_contig10265.444.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10265.444.1
Unique NamemRNA_Ecto-sp8_S_contig10265.444.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10265.444.1 vs. uniprot
Match: D8LJH7_ECTSI (Chromatin remodeling complex subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJH7_ECTSI)

HSP 1 Score: 120 bits (300), Expect = 4.040e-30
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1 
Query:    1 RASRLSEFNTNERCRVLVVSITAGGQGLDFTAASNVVFVELPESPAWLRQAEDRLHRRRQ 180
            RASRLSEFNTNERCRVLVVSITAGGQGLDFTAASNVVFVELPESPAWLRQAEDRLHRRRQ
Sbjct:   92 RASRLSEFNTNERCRVLVVSITAGGQGLDFTAASNVVFVELPESPAWLRQAEDRLHRRRQ 151
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BLAST of mRNA_Ecto-sp8_S_contig10265.444.1 vs. uniprot
Match: W7TN96_9STRA (Zinc finger ran-binding domain-containing protein 3 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TN96_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 7.760e-15
Identity = 39/66 (59.09%), Postives = 45/66 (68.18%), Query Frame = 1 
Query:    1 RASRLSEFNTNERCRVLVVSITAGGQGLDFTAASNVVFVELPESPAWLRQAEDRLHRR---RQVQI 189
            R   +  F  +  CR+ ++ ITAGG GLD  AAS  VFVELP SP WLRQAEDRLHRR   R+VQI
Sbjct:  822 RQDLVKRFKNDRYCRMALIGITAGGSGLDLAAASTAVFVELPNSPHWLRQAEDRLHRRGQRRRVQI 887
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BLAST of mRNA_Ecto-sp8_S_contig10265.444.1 vs. uniprot
Match: A0A6N2LV08_SALVM (Helicase C-terminal domain-containing protein n=1 Tax=Salix viminalis TaxID=40686 RepID=A0A6N2LV08_SALVM)

HSP 1 Score: 72.0 bits (175), Expect = 1.090e-13
Identity = 32/60 (53.33%), Postives = 48/60 (80.00%), Query Frame = 1 
Query:    1 RASRLSEFNTNERCRVLVVSITAGGQGLDFTAASNVVFVELPESPAWLRQAEDRLHRRRQ 180
            R + +S F ++++ ++ ++SITAGG GLDF++A NVVF+ELP+SP+ + QAEDR HRR Q
Sbjct:  123 RQNAVSSFQSSDKVKIAIISITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQ 182
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BLAST of mRNA_Ecto-sp8_S_contig10265.444.1 vs. uniprot
Match: A0A6N2LUF3_SALVM (Helicase C-terminal domain-containing protein n=2 Tax=Salix viminalis TaxID=40686 RepID=A0A6N2LUF3_SALVM)

HSP 1 Score: 70.5 bits (171), Expect = 7.390e-13
Identity = 31/56 (55.36%), Postives = 46/56 (82.14%), Query Frame = 1 
Query:   13 LSEFNTNERCRVLVVSITAGGQGLDFTAASNVVFVELPESPAWLRQAEDRLHRRRQ 180
            +S F ++++ ++ ++SITAGG GLDF++A NVVF+ELP+SP+ + QAEDR HRR Q
Sbjct:  152 VSSFQSSDKVKIAIISITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQ 207
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BLAST of mRNA_Ecto-sp8_S_contig10265.444.1 vs. uniprot
Match: A0A836XNS5_9ROSI (DNA annealing helicase and endonuclease ZRANB n=1 Tax=Salix suchowensis TaxID=1278906 RepID=A0A836XNS5_9ROSI)

HSP 1 Score: 70.5 bits (171), Expect = 1.140e-12
Identity = 31/60 (51.67%), Postives = 47/60 (78.33%), Query Frame = 1 
Query:    1 RASRLSEFNTNERCRVLVVSITAGGQGLDFTAASNVVFVELPESPAWLRQAEDRLHRRRQ 180
            R + +S F ++++ ++ ++ ITAGG GLDF++A NVVF+ELP+SP+ + QAEDR HRR Q
Sbjct:  527 RQNAVSSFQSSDKVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQ 586
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BLAST of mRNA_Ecto-sp8_S_contig10265.444.1 vs. uniprot
Match: A0A6A6MJY6_HEVBR (Uncharacterized protein n=3 Tax=Hevea brasiliensis TaxID=3981 RepID=A0A6A6MJY6_HEVBR)

HSP 1 Score: 68.2 bits (165), Expect = 7.430e-12
Identity = 31/61 (50.82%), Postives = 44/61 (72.13%), Query Frame = 1 
Query:    1 RASRLSEFNTNERCRVLVVSITAGGQGLDFTAASNVVFVELPESPAWLRQAEDRLHRRRQV 183
            R S +  F ++   ++ ++ ITAGG GLDF++A NVVF+ELP+SP+ + QAEDR HRR Q 
Sbjct:  538 RQSAVHSFQSSNEVKIAIIGITAGGIGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQT 598
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BLAST of mRNA_Ecto-sp8_S_contig10265.444.1 vs. uniprot
Match: A0A6J1C2S2_MOMCH (DNA annealing helicase and endonuclease ZRANB3 n=1 Tax=Momordica charantia TaxID=3673 RepID=A0A6J1C2S2_MOMCH)

HSP 1 Score: 68.2 bits (165), Expect = 7.440e-12
Identity = 31/61 (50.82%), Postives = 44/61 (72.13%), Query Frame = 1 
Query:    1 RASRLSEFNTNERCRVLVVSITAGGQGLDFTAASNVVFVELPESPAWLRQAEDRLHRRRQV 183
            R S +  F ++   ++ ++ ITAGG GLDF++A NVVF+ELP+SP+ + QAEDR HRR Q 
Sbjct:  575 RQSAVLSFQSSSEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQT 635
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BLAST of mRNA_Ecto-sp8_S_contig10265.444.1 vs. uniprot
Match: A0A5N6RQ55_9ROSI (Uncharacterized protein n=1 Tax=Carpinus fangiana TaxID=176857 RepID=A0A5N6RQ55_9ROSI)

HSP 1 Score: 68.2 bits (165), Expect = 7.440e-12
Identity = 31/61 (50.82%), Postives = 44/61 (72.13%), Query Frame = 1 
Query:    1 RASRLSEFNTNERCRVLVVSITAGGQGLDFTAASNVVFVELPESPAWLRQAEDRLHRRRQV 183
            R S +  F ++   ++ ++ ITAGG GLDF++A NVVF+ELP+SP+ + QAEDR HRR Q 
Sbjct:  567 RQSAVLSFRSSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQT 627
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BLAST of mRNA_Ecto-sp8_S_contig10265.444.1 vs. uniprot
Match: A0A2C9VPB2_MANES (Uncharacterized protein n=3 Tax=Manihot esculenta TaxID=3983 RepID=A0A2C9VPB2_MANES)

HSP 1 Score: 68.2 bits (165), Expect = 7.440e-12
Identity = 31/61 (50.82%), Postives = 44/61 (72.13%), Query Frame = 1 
Query:    1 RASRLSEFNTNERCRVLVVSITAGGQGLDFTAASNVVFVELPESPAWLRQAEDRLHRRRQV 183
            R S +  F ++   ++ ++ ITAGG GLDF++A NVVF+ELP+SP+ + QAEDR HRR Q 
Sbjct:  554 RQSAVLSFQSSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQT 614
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BLAST of mRNA_Ecto-sp8_S_contig10265.444.1 vs. uniprot
Match: A0A067ETM0_CITSI (Uncharacterized protein n=7 Tax=Citrus TaxID=2706 RepID=A0A067ETM0_CITSI)

HSP 1 Score: 67.8 bits (164), Expect = 1.010e-11
Identity = 31/61 (50.82%), Postives = 43/61 (70.49%), Query Frame = 1 
Query:    1 RASRLSEFNTNERCRVLVVSITAGGQGLDFTAASNVVFVELPESPAWLRQAEDRLHRRRQV 183
            R S +  F  +   ++ ++ ITAGG GLDF++A NVVF+ELP+SP+ + QAEDR HRR Q 
Sbjct:  569 RQSAVHSFQLSNEVKIAIIGITAGGVGLDFSSAQNVVFLELPQSPSLMLQAEDRAHRRGQT 629
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10265.444.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJH7_ECTSI4.040e-30100.00Chromatin remodeling complex subunit n=1 Tax=Ectoc... [more]
W7TN96_9STRA7.760e-1559.09Zinc finger ran-binding domain-containing protein ... [more]
A0A6N2LV08_SALVM1.090e-1353.33Helicase C-terminal domain-containing protein n=1 ... [more]
A0A6N2LUF3_SALVM7.390e-1355.36Helicase C-terminal domain-containing protein n=2 ... [more]
A0A836XNS5_9ROSI1.140e-1251.67DNA annealing helicase and endonuclease ZRANB n=1 ... [more]
A0A6A6MJY6_HEVBR7.430e-1250.82Uncharacterized protein n=3 Tax=Hevea brasiliensis... [more]
A0A6J1C2S2_MOMCH7.440e-1250.82DNA annealing helicase and endonuclease ZRANB3 n=1... [more]
A0A5N6RQ55_9ROSI7.440e-1250.82Uncharacterized protein n=1 Tax=Carpinus fangiana ... [more]
A0A2C9VPB2_MANES7.440e-1250.82Uncharacterized protein n=3 Tax=Manihot esculenta ... [more]
A0A067ETM0_CITSI1.010e-1150.82Uncharacterized protein n=7 Tax=Citrus TaxID=2706 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10265contigEcto-sp8_S_contig10265:6237..6425 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score120.6
Seed ortholog evalue2.7e-25
Seed eggNOG ortholog2880.D8LJH7
Model size189
KEGG koko:K10876,ko:K14440
Hectar predicted targeting categoryother localisation
GOsGO:0000018,GO:0000228,GO:0000733,GO:0003674,GO:0003676,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006275,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008150,GO:0008152,GO:0008156,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010556,GO:0010558,GO:0010605,GO:0016043,GO:0016462,GO:0016787,GO:0016788,GO:0016817,GO:0016818,GO:0017111,GO:0019219,GO:0019222,GO:0031297,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031593,GO:0031974,GO:0031981,GO:0032392,GO:0033554,GO:0034641,GO:0034645,GO:0036292,GO:0036310,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0045005,GO:0045910,GO:0045934,GO:0046483,GO:0048478,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051171,GO:0051172,GO:0051276,GO:0051716,GO:0060255,GO:0065007,GO:0070013,GO:0070530,GO:0071103,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0090329,GO:0097159,GO:0097617,GO:0140030,GO:0140097,GO:1901360,GO:1901363,GO:1901576,GO:2000104,GO:2000112,GO:2000113
Exons1
EggNOG free text desc.annealing helicase activity
EggNOG OGsCOG0553@1,KOG1000@2759
EC3.6.4.12
Cds size189
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143125.4811366-CDS-Ecto-sp8_S_contig10265:6236..64251681143125.4811366-CDS-Ecto-sp8_S_contig10265:6236..6425Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10265 6237..6425 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10265.444.1prot_Ecto-sp8_S_contig10265.444.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10265 6237..6425 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10265.444.1

>prot_Ecto-sp8_S_contig10265.444.1 ID=prot_Ecto-sp8_S_contig10265.444.1|Name=mRNA_Ecto-sp8_S_contig10265.444.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=63bp
RASRLSEFNTNERCRVLVVSITAGGQGLDFTAASNVVFVELPESPAWLRQ
AEDRLHRRRQVQI
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mRNA from alignment at Ecto-sp8_S_contig10265:6237..6425+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10265.444.1 ID=mRNA_Ecto-sp8_S_contig10265.444.1|Name=mRNA_Ecto-sp8_S_contig10265.444.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=189bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10265:6237..6425+ (Ectocarpus species8 EcLAC_412)
AGGGCCTCGAGGCTGTCGGAGTTCAACACCAACGAGCGCTGCCGCGTGCT
CGTCGTTTCCATCACGGCGGGGGGGCAGGGGCTGGACTTCACCGCCGCCA
GCAACGTGGTCTTCGTCGAGCTCCCCGAGAGCCCGGCGTGGCTGAGGCAG
GCGGAGGACAGGCTCCACCGTCGGAGACAGGTCCAAATC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10265:6237..6425+

>mRNA_Ecto-sp8_S_contig10265.444.1 ID=mRNA_Ecto-sp8_S_contig10265.444.1|Name=mRNA_Ecto-sp8_S_contig10265.444.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=189bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10265:6237..6425+ (Ectocarpus species8 EcLAC_412)
AGGGCCTCGAGGCTGTCGGAGTTCAACACCAACGAGCGCTGCCGCGTGCT
CGTCGTTTCCATCACGGCGGGGGGGCAGGGGCTGGACTTCACCGCCGCCA
GCAACGTGGTCTTCGTCGAGCTCCCCGAGAGCCCGGCGTGGCTGAGGCAG
GCGGAGGACAGGCTCCACCGTCGGAGACAGGTCCAAATC
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