mRNA_Ecto-sp8_S_contig10257.431.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10257.431.1
Unique NamemRNA_Ecto-sp8_S_contig10257.431.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10257.431.1 vs. uniprot
Match: A0A835Z6S0_9STRA (GH26 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6S0_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 3.690e-7
Identity = 24/33 (72.73%), Postives = 27/33 (81.82%), Query Frame = 1 
Query:   16 GVSVLGLGALNKAEFINRGGEDVLDAFMPRTTR 114
            G+ VLGLGALNKAEFINRGG+D L A  P+ TR
Sbjct:   77 GIQVLGLGALNKAEFINRGGDDTLSAVRPKFTR 109
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10257.431.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835Z6S0_9STRA3.690e-772.73GH26 domain-containing protein n=1 Tax=Tribonema m... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10257contigEcto-sp8_S_contig10257:258..374 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size117
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size117
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143124.7003994-CDS-Ecto-sp8_S_contig10257:257..3741681143124.7003994-CDS-Ecto-sp8_S_contig10257:257..374Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10257 258..374 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10257.431.1prot_Ecto-sp8_S_contig10257.431.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10257 258..374 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10257.431.1

>prot_Ecto-sp8_S_contig10257.431.1 ID=prot_Ecto-sp8_S_contig10257.431.1|Name=mRNA_Ecto-sp8_S_contig10257.431.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=39bp
MPVFSGVSVLGLGALNKAEFINRGGEDVLDAFMPRTTR*
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mRNA from alignment at Ecto-sp8_S_contig10257:258..374-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10257.431.1 ID=mRNA_Ecto-sp8_S_contig10257.431.1|Name=mRNA_Ecto-sp8_S_contig10257.431.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=117bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10257:258..374- (Ectocarpus species8 EcLAC_412)
ATGCCCGTTTTTTCAGGCGTTTCGGTTCTGGGGCTCGGGGCTCTGAACAA
AGCGGAGTTCATCAACCGGGGTGGAGAAGACGTGCTGGACGCCTTCATGC
CACGAACGACCAGGTAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10257:258..374-

>mRNA_Ecto-sp8_S_contig10257.431.1 ID=mRNA_Ecto-sp8_S_contig10257.431.1|Name=mRNA_Ecto-sp8_S_contig10257.431.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=117bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10257:258..374- (Ectocarpus species8 EcLAC_412)
ATGCCCGTTTTTTCAGGCGTTTCGGTTCTGGGGCTCGGGGCTCTGAACAA
AGCGGAGTTCATCAACCGGGGTGGAGAAGACGTGCTGGACGCCTTCATGC
CACGAACGACCAGGTAG
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