mRNA_Ecto-sp8_S_contig10231.376.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10231.376.1
Unique NamemRNA_Ecto-sp8_S_contig10231.376.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10231.376.1 vs. uniprot
Match: D8LPT5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPT5_ECTSI)

HSP 1 Score: 211 bits (538), Expect = 7.220e-62
Identity = 103/108 (95.37%), Postives = 103/108 (95.37%), Query Frame = 3 
Query:  771 VADNSQGEDLLHTRVKGTPDCTMSRLYIGNLPMDMKEKDLEDIFYKYGKITDMQLKMPERPPAFGFVTFEDSRDADEAVRARDGYDFDGYRLRVEMSRGKREFGGGFG 1094
            V    QGEDLLHTRVKGTPD TMSRLYIGNLPMDMKEKDLEDIFYKYGKITDMQLKMPERPPAFGFVTFEDSRDADEAVRARDGYDFDGYRLRVEMSRGKREFGGGFG
Sbjct:   31 VLGRKQGEDLLHTRVKGTPDRTMSRLYIGNLPMDMKEKDLEDIFYKYGKITDMQLKMPERPPAFGFVTFEDSRDADEAVRARDGYDFDGYRLRVEMSRGKREFGGGFG 138
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BLAST of mRNA_Ecto-sp8_S_contig10231.376.1 vs. uniprot
Match: A0A6H5KN34_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN34_9PHAE)

HSP 1 Score: 211 bits (536), Expect = 7.750e-61
Identity = 100/108 (92.59%), Postives = 102/108 (94.44%), Query Frame = 3 
Query:  771 VADNSQGEDLLHTRVKGTPDCTMSRLYIGNLPMDMKEKDLEDIFYKYGKITDMQLKMPERPPAFGFVTFEDSRDADEAVRARDGYDFDGYRLRVEMSRGKREFGGGFG 1094
            +    QG+DLLHTRV GTPDCTMSRLYIGNLPMDMKEKDLEDIFYKYGKITDMQLKMPERPPAFGFVTFED RDADEAVRARDGYDFDGYRLRVEMSRGKREFGGGFG
Sbjct:   39 ILGRKQGDDLLHTRVNGTPDCTMSRLYIGNLPMDMKEKDLEDIFYKYGKITDMQLKMPERPPAFGFVTFEDPRDADEAVRARDGYDFDGYRLRVEMSRGKREFGGGFG 146
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BLAST of mRNA_Ecto-sp8_S_contig10231.376.1 vs. uniprot
Match: D8LB97_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB97_ECTSI)

HSP 1 Score: 132 bits (331), Expect = 2.040e-31
Identity = 61/87 (70.11%), Postives = 77/87 (88.51%), Query Frame = 3 
Query:  837 MSRLYIGNLPMDMKEKDLEDIFYKYGKITDMQLKMPERPPAFGFVTFEDSRDADEAVRARDGYDFDGYRLRVEMSRGKRE-FGGGFG 1094
            M+R+YIGNLPMD+ EKD++D+FYK+G+I D+ LK P RPPAFGF+TF+D+RDA+EAVRARDGYD DG RLRVE+SRG+R+ FG G G
Sbjct:    1 MARIYIGNLPMDVTEKDMDDVFYKFGRIVDIDLKTPARPPAFGFITFQDARDAEEAVRARDGYDMDGSRLRVEISRGRRDPFGMGGG 87
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BLAST of mRNA_Ecto-sp8_S_contig10231.376.1 vs. uniprot
Match: A0A7S3LZ23_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3LZ23_9STRA)

HSP 1 Score: 122 bits (305), Expect = 2.670e-28
Identity = 53/89 (59.55%), Postives = 69/89 (77.53%), Query Frame = 3 
Query:  819 GTPDCTMSRLYIGNLPMDMKEKDLEDIFYKYGKITDMQLKMPERPPAFGFVTFEDSRDADEAVRARDGYDFDGYRLRVEMSRGKREFGG 1085
            G P    +R+Y+GNLP+D++E +L+D+FYKYGKI D+ LK P RPPAF F+ F+D RDA +A+R RD Y+FDGYRLRVE S+G R  GG
Sbjct:    7 GRPVVMANRIYVGNLPLDIRESELDDLFYKYGKIRDIDLKTPARPPAFAFIAFDDYRDAQDAIRGRDNYNFDGYRLRVEFSKGDRRAGG 95
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BLAST of mRNA_Ecto-sp8_S_contig10231.376.1 vs. uniprot
Match: A0A7S3UTA7_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UTA7_HETAK)

HSP 1 Score: 118 bits (295), Expect = 4.300e-28
Identity = 55/94 (58.51%), Postives = 71/94 (75.53%), Query Frame = 3 
Query:  813 VKGTPDCTMSRLYIGNLPMDMKEKDLEDIFYKYGKITDMQLKMPERPPAFGFVTFEDSRDADEAVRARDGYDFDGYRLRVEMSRGKREFGGGFG 1094
            VK      MSR+YIGNLP+D+ E+++ED+FYKYG+I  + +K P RPPAF FV FED+RDA++AV  RDGYDFDG R+RVE+S G+   GG  G
Sbjct:   14 VKAVQYGIMSRIYIGNLPIDITEREIEDLFYKYGRIIQISVKNPSRPPAFAFVEFEDARDAEDAVYGRDGYDFDGERIRVEISHGRDRGGGXXG 107
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BLAST of mRNA_Ecto-sp8_S_contig10231.376.1 vs. uniprot
Match: A0A7S2B3I3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B3I3_9STRA)

HSP 1 Score: 116 bits (291), Expect = 7.410e-28
Identity = 49/77 (63.64%), Postives = 66/77 (85.71%), Query Frame = 3 
Query:  843 RLYIGNLPMDMKEKDLEDIFYKYGKITDMQLKMPERPPAFGFVTFEDSRDADEAVRARDGYDFDGYRLRVEMSRGKR 1073
            R+++GNLPMD++E+D+ED+FYKYG+++D+ LK P RPPAF F+TF+D RDAD+AVR RDGY   G RLRVE+ RG+R
Sbjct:    8 RIFVGNLPMDIRERDIEDLFYKYGRMSDIHLKTPSRPPAFAFITFDDRRDADDAVRGRDGYSLGGERLRVEIVRGRR 84
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BLAST of mRNA_Ecto-sp8_S_contig10231.376.1 vs. uniprot
Match: A0A7S0YR52_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0YR52_9CRYP)

HSP 1 Score: 116 bits (290), Expect = 8.170e-28
Identity = 57/110 (51.82%), Postives = 77/110 (70.00%), Query Frame = 3 
Query:  786 QGEDLLHTRV-------KGTPDCTMSRLYIGNLPMDMKEKDLEDIFYKYGKITDMQLKMPERPPAFGFVTFEDSRDADEAVRARDGYDFDGYRLRVEMSRGKREFGGGFG 1094
            +G+D    RV       +   D  M+++Y+GNLP+D + +D+ED+F+KYG+I D+ LK P RPPAF FVTFE + DA++A+R RDG DF+G RLRVEMSR     GGGFG
Sbjct:    2 EGQDFSLERVACVSRQGRHPDDKKMAKVYVGNLPLDCRVRDIEDLFWKYGRIRDIDLKTPSRPPAFAFVTFESTMDAEDAIRGRDGVDFEGQRLRVEMSRAS---GGGFG 108
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BLAST of mRNA_Ecto-sp8_S_contig10231.376.1 vs. uniprot
Match: A0A835YQ88_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ88_9STRA)

HSP 1 Score: 119 bits (298), Expect = 3.660e-27
Identity = 52/79 (65.82%), Postives = 69/79 (87.34%), Query Frame = 3 
Query:  837 MSRLYIGNLPMDMKEKDLEDIFYKYGKITDMQLKMPERPPAFGFVTFEDSRDADEAVRARDGYDFDGYRLRVEMSRGKR 1073
            M+R+Y+GNLPM+++EKD+ED+FYK+G+I D+ LK P RPPAF FV F+D RDA++AVRARDGY+ DG RLRVE++RG R
Sbjct:    1 MARVYVGNLPMNVREKDVEDLFYKFGRIRDIDLKTPARPPAFAFVAFDDVRDAEDAVRARDGYEMDGERLRVELARGAR 79
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BLAST of mRNA_Ecto-sp8_S_contig10231.376.1 vs. uniprot
Match: A0A836CC30_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC30_9STRA)

HSP 1 Score: 120 bits (301), Expect = 4.470e-27
Identity = 54/84 (64.29%), Postives = 70/84 (83.33%), Query Frame = 3 
Query:  837 MSRLYIGNLPMDMKEKDLEDIFYKYGKITDMQLKMPERPPAFGFVTFEDSRDADEAVRARDGYDFDGYRLRVEMSRGKREFGGG 1088
            M+R+Y+GNLPM+++EKD+ED+FYKYG+I D+ LK P RPP+F FV FED RDA++AV  RDGY+ DG RLRVE++RG RE G G
Sbjct:    1 MARVYVGNLPMNVREKDVEDLFYKYGRIRDIDLKTPARPPSFAFVAFEDVRDAEDAVSGRDGYEMDGQRLRVELARGARERGFG 84
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BLAST of mRNA_Ecto-sp8_S_contig10231.376.1 vs. uniprot
Match: A0A453FB95_AEGTS (RRM domain-containing protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453FB95_AEGTS)

HSP 1 Score: 114 bits (286), Expect = 6.690e-27
Identity = 48/76 (63.16%), Postives = 64/76 (84.21%), Query Frame = 3 
Query:  846 LYIGNLPMDMKEKDLEDIFYKYGKITDMQLKMPERPPAFGFVTFEDSRDADEAVRARDGYDFDGYRLRVEMSRGKR 1073
            +Y+GNLP D++E+++ED+FYKYG+I D+ LK+P RPP + FV FED RDAD+A+  RDGYDFDGYRLRVE++ G R
Sbjct:    9 IYVGNLPGDIREREVEDLFYKYGRIVDIDLKIPPRPPGYAFVEFEDPRDADDAIYGRDGYDFDGYRLRVELAHGGR 84
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10231.376.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LPT5_ECTSI7.220e-6295.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KN34_9PHAE7.750e-6192.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LB97_ECTSI2.040e-3170.11Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S3LZ23_9STRA2.670e-2859.55Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S3UTA7_HETAK4.300e-2858.51Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A7S2B3I3_9STRA7.410e-2863.64Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S0YR52_9CRYP8.170e-2851.82Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A835YQ88_9STRA3.660e-2765.82Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CC30_9STRA4.470e-2764.29Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A453FB95_AEGTS6.690e-2763.16RRM domain-containing protein n=1 Tax=Aegilops tau... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10231contigEcto-sp8_S_contig10231:1404..2989 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score180.6
Seed ortholog evalue5e-43
Seed eggNOG ortholog2880.D8LPT5
Preferred nameSR30
Model size1262
KEGG koko:K12890
KEGG Pathwayko03040,ko04657,ko05168,map03040,map04657,map05168
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016070,GO:0016604,GO:0016607,GO:0031974,GO:0031981,GO:0034641,GO:0035061,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363
Exons2
EggNOG free text desc.RNA splicing
EggNOG OGsCOG0724@1,KOG0105@2759
Cds size426
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143121.4251535-CDS-Ecto-sp8_S_contig10231:1403..16501681143121.4251535-CDS-Ecto-sp8_S_contig10231:1403..1650Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10231 1404..1650 -
1681143121.440569-CDS-Ecto-sp8_S_contig10231:1974..21531681143121.440569-CDS-Ecto-sp8_S_contig10231:1974..2153Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10231 1975..2153 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143121.4516375-UTR-Ecto-sp8_S_contig10231:2153..29891681143121.4516375-UTR-Ecto-sp8_S_contig10231:2153..2989Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10231 2154..2989 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10231.376.1prot_Ecto-sp8_S_contig10231.376.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10231 1404..2153 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10231.376.1

>prot_Ecto-sp8_S_contig10231.376.1 ID=prot_Ecto-sp8_S_contig10231.376.1|Name=mRNA_Ecto-sp8_S_contig10231.376.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=142bp
MSRLYIGNLPMDMKEKDLEDIFYKYGKITDMQLKMPERPPAFGFVTFEDS
RDADEAVRARDGYDFDGYRLRVEMSRGKREFGGGFGGGGFGGGGYGGGGG
GYGGGGGGGYGGGGGHGGGGGYGGGMGPPRGGFGGGKCMRR*
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mRNA from alignment at Ecto-sp8_S_contig10231:1404..2989-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10231.376.1 ID=mRNA_Ecto-sp8_S_contig10231.376.1|Name=mRNA_Ecto-sp8_S_contig10231.376.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1586bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10231:1404..2989- (Ectocarpus species8 EcLAC_412)
CTTTGGCAGTGGATAGATCTCGGATGGATGCGTTGCGTGTGTAGTGTGTA
AAATAAAAATTGAAACGCTCAACTCGTTCAGCAGTACACTACAATGCTCT
CACGCGACCGAGCCACGTGTGACGGGTTGCGTAGAGGCTTACGGGTAGAG
TTTAAGGCCAGTTTGGCCGCGTCGTCAGCTACGGGTTAATGCGGAGCGAT
AAAGGAGCTGATACCGAGCGATGGTCTCTTGGTCCTTGGTTGGTCTGTGG
CGTGTCTGCGGGCATGACCACAAAGGTCAGAGGGTACTATCTTGCGTCAG
ATCTTAATTTACCGTAAAAACGAGGATCGAGGTTCTTCTGTCCTTTCCCA
TACAATTGTACACACATTCGAGAAGTCTGTGAGATTGTGTTTACTTTCAA
ACACACACAACGAATTTGTGCCGTTTTTTTGTCCGATCCCGTCTGGCCTT
GTCAGAACTCAACCGGAAAAACGAGTAGATAGTACAGCAGTATTCAATTT
AGCTTGTTTCGTTCACTATAATATGTTTCCTTTACTATGTAACAACAGCG
AATTTTACCTTTTTAGTTCGACCCCTCTCCCGATCCAGGTCTCACTGCCG
AACCTAAACCCTCACTTAGGTTTGCCGCATCGTACAACCAGCTCTTTTTA
TCTGATGTCAAGAATCGACTAATACGCTCGCGTAGTCATGCATACCGCAC
CTTGCAAGTGATTGCGCCGCAAAATCTACAATTCACGAGCTTTTCTTCCG
TTGGCTGAGCTTCTTCTGATGTGGCCGATAACTCACAGGGCGAAGACCTC
CTTCACACACGAGTCAAAGGCACCCCCGACTGCACCATGTCTCGGCTATA
CATCGGCAACCTGCCCATGGACATGAAGGAGAAAGACCTGGAGGACATCT
TCTACAAGTACGGCAAGATCACCGACATGCAGCTCAAGATGCCCGAGCGC
CCGCCGGCGTTCGGGTTCGTGACGTTCGAGGACTCTAGGGACGCCGACGA
GGCAGTCAGGGCCAGGTAAGAGCGGGGAAGATGGTGAACAAGGGGGAAAA
TCTGTTTTGTCTCTTTCTGTCTCTCTGCCTCTTGTCTCTCTGCTCTCTCT
TTGTCATTGTCAGTTCTACGTCAGGTACAAGCGGCAATCTATCTATTGCT
CCCGCTTTGGTTTCGAGCACCTACTTCTCTCGAGAACAATCGGCGCAACG
CGTCGTCTTTCGCCAGCTTCGCGATTTCAAGAAAAGAAAACGAACGATGT
TCTCTCTCTCCCGGCAACAAGCCGCAGTGCCGTTTACCCGACCTGTTTTC
ACGAGCTACCACCACACGTGCCCATTTCGGTCACGGCAGGGACGGCTACG
ACTTCGACGGCTACCGGCTTCGCGTCGAGATGTCCCGCGGGAAGCGCGAG
TTCGGCGGCGGCTTCGGCGGTGGCGGGTTTGGCGGAGGCGGGTACGGCGG
AGGCGGAGGCGGATACGGCGGCGGCGGCGGAGGCGGATACGGCGGGGGTG
GTGGACACGGCGGCGGGGGTGGATATGGTGGCGGTATGGGACCGCCGCGT
GGCGGCTTCGGTGGAGGTAAGTGCATGAGACGTTAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10231:1404..2989-

>mRNA_Ecto-sp8_S_contig10231.376.1 ID=mRNA_Ecto-sp8_S_contig10231.376.1|Name=mRNA_Ecto-sp8_S_contig10231.376.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=426bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10231:1404..2989- (Ectocarpus species8 EcLAC_412)
ATGTCTCGGCTATACATCGGCAACCTGCCCATGGACATGAAGGAGAAAGA
CCTGGAGGACATCTTCTACAAGTACGGCAAGATCACCGACATGCAGCTCA
AGATGCCCGAGCGCCCGCCGGCGTTCGGGTTCGTGACGTTCGAGGACTCT
AGGGACGCCGACGAGGCAGTCAGGGCCAGGGACGGCTACGACTTCGACGG
CTACCGGCTTCGCGTCGAGATGTCCCGCGGGAAGCGCGAGTTCGGCGGCG
GCTTCGGCGGTGGCGGGTTTGGCGGAGGCGGGTACGGCGGAGGCGGAGGC
GGATACGGCGGCGGCGGCGGAGGCGGATACGGCGGGGGTGGTGGACACGG
CGGCGGGGGTGGATATGGTGGCGGTATGGGACCGCCGCGTGGCGGCTTCG
GTGGAGGTAAGTGCATGAGACGTTAG
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