mRNA_Ecto-sp8_S_contig10217.357.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10217.357.1
Unique NamemRNA_Ecto-sp8_S_contig10217.357.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig10217.357.1 vs. uniprot
Match: A0A7S1NPW1_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1NPW1_9EUGL)

HSP 1 Score: 199 bits (507), Expect = 2.960e-61
Identity = 86/114 (75.44%), Postives = 98/114 (85.96%), Query Frame = 1
Query:  223 KAPRPKRNQQGELVFPDFPQFRPNLSPKQVLRMGSFGGTYFRSIKSSVTGKTYR-DQWKEFPADWFEGLDVKRQVASPTYLNSVNTYGVHCGGDLHMWESSGWIKECDPYGWFQ 561
            + P PKRN  GELVFPD+P+FRPNL+PK+VL+MGSFGGTYFRSIKS VTGKTY  DQWKEFPADWFEGL++  ++ S TY   VNTY V+CGGDL+MWESSGWI ECDPYGWFQ
Sbjct:   60 RMPIPKRNANGELVFPDYPEFRPNLTPKEVLQMGSFGGTYFRSIKSGVTGKTYAADQWKEFPADWFEGLNINAKITSQTYREQVNTYKVNCGGDLYMWESSGWINECDPYGWFQ 173          
BLAST of mRNA_Ecto-sp8_S_contig10217.357.1 vs. uniprot
Match: D8LR27_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR27_ECTSI)

HSP 1 Score: 184 bits (467), Expect = 9.490e-57
Identity = 79/81 (97.53%), Postives = 80/81 (98.77%), Query Frame = 1
Query:  319 MGSFGGTYFRSIKSSVTGKTYRDQWKEFPADWFEGLDVKRQVASPTYLNSVNTYGVHCGGDLHMWESSGWIKECDPYGWFQ 561
            MGSFGGTYFR IKSSVTGKTYRDQWKEFPADWFEGLDVKRQVASPTYLN+VNTYGVHCGGDLHMWESSGWIKECDPYGWFQ
Sbjct:    1 MGSFGGTYFRPIKSSVTGKTYRDQWKEFPADWFEGLDVKRQVASPTYLNAVNTYGVHCGGDLHMWESSGWIKECDPYGWFQ 81          
BLAST of mRNA_Ecto-sp8_S_contig10217.357.1 vs. uniprot
Match: W5NBZ2_LEPOC (Uncharacterized LOC102683593 n=2 Tax=Lepisosteus oculatus TaxID=7918 RepID=W5NBZ2_LEPOC)

HSP 1 Score: 171 bits (434), Expect = 1.900e-51
Identity = 72/109 (66.06%), Postives = 87/109 (79.82%), Query Frame = 1
Query:  235 PKRNQQGELVFPDFPQFRPNLSPKQVLRMGSFGGTYFRSIKSSVTGKTYRDQWKEFPADWFEGLDVKRQVASPTYLNSVNTYGVHCGGDLHMWESSGWIKECDPYGWFQ 561
            P++N +G+LVF DFP F PN++PK+VL+ GSFGGTYFR I SS+T ++Y+D WKE P DW EGLD+ +QVASPTY  +VNTY V CGG L MWESSGWI   DPYGWFQ
Sbjct:   51 PEKNNKGQLVFKDFPTFGPNMTPKEVLQAGSFGGTYFRPIYSSITKQSYKDVWKELPVDWLEGLDIPKQVASPTYRENVNTYKVKCGGSLEMWESSGWIVPQDPYGWFQ 159          
BLAST of mRNA_Ecto-sp8_S_contig10217.357.1 vs. uniprot
Match: A0A2G8KVN9_STIJA (Uncharacterized protein n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8KVN9_STIJA)

HSP 1 Score: 174 bits (441), Expect = 2.950e-51
Identity = 76/112 (67.86%), Postives = 86/112 (76.79%), Query Frame = 1
Query:  226 APRPKRNQQGELVFPDFPQFRPNLSPKQVLRMGSFGGTYFRSIKSSVTGKTYRDQWKEFPADWFEGLDVKRQVASPTYLNSVNTYGVHCGGDLHMWESSGWIKECDPYGWFQ 561
            AP PKRN +GELVFPD P+  PNL+P++VL+ GSFGGTYFR IKS VTG+ Y   WKE P DW EGL + +QVAS TY   VNTYGV CGG L MWESSGWI + DPYGWFQ
Sbjct:   67 APLPKRNAKGELVFPDAPEMSPNLTPREVLQAGSFGGTYFRPIKSGVTGEKYSGVWKELPKDWLEGLSIPKQVASSTYHADVNTYGVKCGGSLEMWESSGWINKQDPYGWFQ 178          
BLAST of mRNA_Ecto-sp8_S_contig10217.357.1 vs. uniprot
Match: UPI001E1DF070 (uncharacterized protein LOC123552860 n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DF070)

HSP 1 Score: 174 bits (441), Expect = 4.920e-51
Identity = 74/110 (67.27%), Postives = 87/110 (79.09%), Query Frame = 1
Query:  229 PRPKRNQQGELVFPDFPQFRPNLSPKQVLRMGSFGGTYFRSIKSSVTGKTYRDQWKEFPADWFEGLDVKRQVASPTYLNSVNTYGVHCGGDLHMWESSGWIKECDPYGWF 558
            P PKRN +G+LVFPD P+ RPN++PK+VL+ GSFGGTYFR IKSSVTGK+Y   WKE P DW EGL++ +QV+S TY   VNTYGV CGG L MWE SGWI + DPYGWF
Sbjct:   81 PLPKRNAKGQLVFPDHPELRPNMTPKEVLQAGSFGGTYFRPIKSSVTGKSYTQVWKELPKDWLEGLNIGKQVSSSTYDEKVNTYGVKCGGSLEMWEESGWIHKQDPYGWF 190          
BLAST of mRNA_Ecto-sp8_S_contig10217.357.1 vs. uniprot
Match: A0A7M7T340_STRPU (Uncharacterized protein n=1 Tax=Strongylocentrotus purpuratus TaxID=7668 RepID=A0A7M7T340_STRPU)

HSP 1 Score: 173 bits (439), Expect = 8.540e-51
Identity = 76/110 (69.09%), Postives = 86/110 (78.18%), Query Frame = 1
Query:  229 PRPKRNQQGELVFPDFPQFRPNLSPKQVLRMGSFGGTYFRSIKSSVTGKTYRDQWKEFPADWFEGLDVKRQVASPTYLNSVNTYGVHCGGDLHMWESSGWIKECDPYGWF 558
            P PKRN +GELVF D+P+ RPN+SPK+VL+ GSFGGTYFR IKSSVTG+ Y   WKE P +W EGLD+ RQVAS  YL  VNTY V CGG L MWESSGWI + DPYGWF
Sbjct:   81 PLPKRNAKGELVFSDYPEMRPNMSPKEVLQAGSFGGTYFRPIKSSVTGEKYSGVWKELPKNWLEGLDIPRQVASSPYLAEVNTYKVKCGGSLEMWESSGWIDKQDPYGWF 190          
BLAST of mRNA_Ecto-sp8_S_contig10217.357.1 vs. uniprot
Match: A0A1W0E686_9MICR (Uncharacterized protein n=1 Tax=Enterocytozoon hepatopenaei TaxID=646526 RepID=A0A1W0E686_9MICR)

HSP 1 Score: 172 bits (436), Expect = 9.630e-51
Identity = 70/107 (65.42%), Postives = 89/107 (83.18%), Query Frame = 1
Query:  241 RNQQGELVFPDFPQFRPNLSPKQVLRMGSFGGTYFRSIKSSVTGKTYRDQWKEFPADWFEGLDVKRQVASPTYLNSVNTYGVHCGGDLHMWESSGWIKECDPYGWFQ 561
            R++ G++VF D+P F+PNL+PK+VL++GSFGGTYFR I+SS+T K+YRD WKEFP+DWFEGL++ ++V S TY N VN Y V CGG L MWE SGWIK+ DPYGWFQ
Sbjct:   51 RDKDGKIVFDDYPDFKPNLTPKEVLQLGSFGGTYFRPIESSITNKSYRDVWKEFPSDWFEGLNITKEVTSLTYYNDVNKYKVKCGGSLQMWEESGWIKKEDPYGWFQ 157          
BLAST of mRNA_Ecto-sp8_S_contig10217.357.1 vs. uniprot
Match: A0A6J2W3Q1_CHACN (uncharacterized protein LOC115819514 n=1 Tax=Chanos chanos TaxID=29144 RepID=A0A6J2W3Q1_CHACN)

HSP 1 Score: 174 bits (440), Expect = 1.240e-50
Identity = 73/108 (67.59%), Postives = 88/108 (81.48%), Query Frame = 1
Query:  238 KRNQQGELVFPDFPQFRPNLSPKQVLRMGSFGGTYFRSIKSSVTGKTYRDQWKEFPADWFEGLDVKRQVASPTYLNSVNTYGVHCGGDLHMWESSGWIKECDPYGWFQ 561
            K+N++GEL+F DFP+FRPN++PK+VL+ GSFGGTYFRSI SS+T + Y+D WKE P DW EGLD+ +QVAS TY  +VNTY V CGG L MWESSGWI   DPYGWFQ
Sbjct:  108 KKNEKGELIFKDFPEFRPNMTPKEVLQAGSFGGTYFRSIYSSITKQHYKDVWKELPTDWLEGLDIPKQVASATYRENVNTYKVKCGGSLEMWESSGWIVTQDPYGWFQ 215          
BLAST of mRNA_Ecto-sp8_S_contig10217.357.1 vs. uniprot
Match: A7RPE0_NEMVE (Predicted protein (Fragment) n=2 Tax=Nematostella vectensis TaxID=45351 RepID=A7RPE0_NEMVE)

HSP 1 Score: 171 bits (432), Expect = 1.360e-50
Identity = 76/125 (60.80%), Postives = 92/125 (73.60%), Query Frame = 1
Query:  187 GTTDKGDVSASGKAPRPKRNQQGELVFPDFPQFRPNLSPKQVLRMGSFGGTYFRSIKSSVTGKTYRDQWKEFPADWFEGLDVKRQVASPTYLNSVNTYGVHCGGDLHMWESSGWIKECDPYGWFQ 561
            G+TD  DV         KR++QG+LVFPD+P F+PNL+PK+V++ GSFGGTYFR I S++TG+ Y   WKEFP+DWFEGL +  QVAS  Y   VNTY V CGG L MWESSGWI + DPYGWFQ
Sbjct:    6 GSTDNADVEI-------KRDKQGKLVFPDYPDFKPNLTPKEVMQAGSFGGTYFRPISSAITGERYSGVWKEFPSDWFEGLTIGTQVASSKYNKDVNTYKVKCGGSLEMWESSGWINKQDPYGWFQ 123          
BLAST of mRNA_Ecto-sp8_S_contig10217.357.1 vs. uniprot
Match: A0A6P8ISI2_ACTTE (uncharacterized protein LOC116304540 n=2 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8ISI2_ACTTE)

HSP 1 Score: 172 bits (435), Expect = 2.230e-50
Identity = 71/108 (65.74%), Postives = 89/108 (82.41%), Query Frame = 1
Query:  238 KRNQQGELVFPDFPQFRPNLSPKQVLRMGSFGGTYFRSIKSSVTGKTYRDQWKEFPADWFEGLDVKRQVASPTYLNSVNTYGVHCGGDLHMWESSGWIKECDPYGWFQ 561
            KR++ G+LVFPD+P+F+PNL+PK+VL+ GSFGGTY+R IKSSVTG+ Y  +WKEFP+DWF+GL + +QV+S TY   VNTY V CGG L MWESSGWI +  PYGWFQ
Sbjct:   67 KRDKHGKLVFPDYPEFKPNLTPKEVLQAGSFGGTYYRPIKSSVTGEKYSGEWKEFPSDWFDGLSINKQVSSSTYHIDVNTYNVKCGGSLEMWESSGWIAKQGPYGWFQ 174          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10217.357.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1NPW1_9EUGL2.960e-6175.44Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
D8LR27_ECTSI9.490e-5797.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
W5NBZ2_LEPOC1.900e-5166.06Uncharacterized LOC102683593 n=2 Tax=Lepisosteus o... [more]
A0A2G8KVN9_STIJA2.950e-5167.86Uncharacterized protein n=1 Tax=Stichopus japonicu... [more]
UPI001E1DF0704.920e-5167.27uncharacterized protein LOC123552860 n=1 Tax=Merce... [more]
A0A7M7T340_STRPU8.540e-5169.09Uncharacterized protein n=1 Tax=Strongylocentrotus... [more]
A0A1W0E686_9MICR9.630e-5165.42Uncharacterized protein n=1 Tax=Enterocytozoon hep... [more]
A0A6J2W3Q1_CHACN1.240e-5067.59uncharacterized protein LOC115819514 n=1 Tax=Chano... [more]
A7RPE0_NEMVE1.360e-5060.80Predicted protein (Fragment) n=2 Tax=Nematostella ... [more]
A0A6P8ISI2_ACTTE2.230e-5065.74uncharacterized protein LOC116304540 n=2 Tax=Actin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10217contigEcto-sp8_S_contig10217:1137..2242 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score184.1
Seed ortholog evalue5.9e-44
Seed eggNOG ortholog2880.D8LR27
Model size561
Hectar predicted targeting categoryother localisation
Exons3
EggNOG OGs2AUXR@1,2RZV2@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-06_004600.1
Cds size561
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143120.003729-CDS-Ecto-sp8_S_contig10217:1136..11641681143120.003729-CDS-Ecto-sp8_S_contig10217:1136..1164Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10217 1137..1164 -
1681143120.0149512-CDS-Ecto-sp8_S_contig10217:1464..15881681143120.0149512-CDS-Ecto-sp8_S_contig10217:1464..1588Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10217 1465..1588 -
1681143120.0295231-CDS-Ecto-sp8_S_contig10217:1833..22421681143120.0295231-CDS-Ecto-sp8_S_contig10217:1833..2242Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10217 1834..2242 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10217.357.1prot_Ecto-sp8_S_contig10217.357.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10217 1137..2242 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10217.357.1

>prot_Ecto-sp8_S_contig10217.357.1 ID=prot_Ecto-sp8_S_contig10217.357.1|Name=mRNA_Ecto-sp8_S_contig10217.357.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=187bp
AASKKPRKTLSSSSSSSSSSSSSSSSSRSAAGKAKAGAKGKAKAAKNPDA
DRKASSPTTSSAGTTDKGDVSASGKAPRPKRNQQGELVFPDFPQFRPNLS
PKQVLRMGSFGGTYFRSIKSSVTGKTYRDQWKEFPADWFEGLDVKRQVAS
PTYLNSVNTYGVHCGGDLHMWESSGWIKECDPYGWFQ
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mRNA from alignment at Ecto-sp8_S_contig10217:1137..2242-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10217.357.1 ID=mRNA_Ecto-sp8_S_contig10217.357.1|Name=mRNA_Ecto-sp8_S_contig10217.357.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=1106bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10217:1137..2242- (Ectocarpus species8 EcLAC_412)
GCAGCCTCCAAAAAGCCCCGCAAAACGTTGAGCAGCAGCAGCAGCAGCAG CAGCAGCAGCAGCAGCAGCAGCAGTAGCTCAAGGAGTGCCGCGGGGAAGG CAAAAGCAGGGGCCAAAGGAAAGGCGAAGGCTGCCAAAAACCCTGATGCT GACCGCAAAGCGTCGTCTCCCACAACTTCTTCGGCTGGCACCACTGACAA AGGTGATGTTAGTGCTTCTGGGAAGGCCCCGCGCCCGAAGAGAAACCAAC AAGGGGAGCTCGTCTTTCCTGATTTCCCCCAGTTTCGACCGAACTTGTCG CCCAAGCAAGTTCTTCGCATGGGGTCTTTCGGCGGAACGTACTTCAGGTC GATCAAGTCTTCGGTAACTGGAAAGACGTACCGCGACCAGTGGAAGGAGT TTCCCGCGGGTAAGTTGCTGCAGCATCCACGGCGAGTGAGACTACTTGAA GAGACAAAACAAGATATATTTTGTGTGTGTACTTGTAAAGTTACTGGAGT GACGTACTGACCGCGCACTATCTGAATCAGAGGTTACCCTCTTGTGGCCG TGGTGCTCGCAAGTCTTCAAGTCTTCACAACAAGGTTACATGCAATCCAA GTGTTCCCTTTGCGATGGCGCGTGTCCCGATGACCTCCGAATATGCTACC ATAGACTGGTTCGAGGGATTGGACGTGAAGAGGCAGGTGGCCAGTCCCAC CTACTTGAACTCTGTCAACACCTATGGCGTCCACTGTGGTGGGGACTTGC ACATGTGGGAGTCGAGCGGATGGATAAAGTGAGCCGGGGACAATTTGGGC CACATTAATCTTGTTCGCATCACTGATCGATGCTGCGTTGTCTACTGTAC CTTGCAGTCTATCCGTCGTGCATGAGGAGCGCAGAGATGGAACGTACCGG ATGCACAAGATCTGTCTGTAGCACGCACGGCCTGCGGTCCGGCTGTCAAA CAAACATGCTGACATTTCCCTCCTTCTCCTTCAACTCCTCCCCCCCCCGT CCCATCTTTCCGTGTATCTTTGCCCTGCTTCCCATAATCGCAACACTGCT GTACCTGCCGCGAATTATTTTCACACAGGGAGTGCGACCCCTACGGATGG TTCCAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10217:1137..2242-

>mRNA_Ecto-sp8_S_contig10217.357.1 ID=mRNA_Ecto-sp8_S_contig10217.357.1|Name=mRNA_Ecto-sp8_S_contig10217.357.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=561bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10217:1137..2242- (Ectocarpus species8 EcLAC_412)
GCAGCCTCCAAAAAGCCCCGCAAAACGTTGAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGTAGCTCAAGGAGTGCCGCGGGGAAGG
CAAAAGCAGGGGCCAAAGGAAAGGCGAAGGCTGCCAAAAACCCTGATGCT
GACCGCAAAGCGTCGTCTCCCACAACTTCTTCGGCTGGCACCACTGACAA
AGGTGATGTTAGTGCTTCTGGGAAGGCCCCGCGCCCGAAGAGAAACCAAC
AAGGGGAGCTCGTCTTTCCTGATTTCCCCCAGTTTCGACCGAACTTGTCG
CCCAAGCAAGTTCTTCGCATGGGGTCTTTCGGCGGAACGTACTTCAGGTC
GATCAAGTCTTCGGTAACTGGAAAGACGTACCGCGACCAGTGGAAGGAGT
TTCCCGCGGACTGGTTCGAGGGATTGGACGTGAAGAGGCAGGTGGCCAGT
CCCACCTACTTGAACTCTGTCAACACCTATGGCGTCCACTGTGGTGGGGA
CTTGCACATGTGGGAGTCGAGCGGATGGATAAAGGAGTGCGACCCCTACG
GATGGTTCCAG
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