mRNA_Ecto-sp8_S_contig10216.355.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10216.355.1
Unique NamemRNA_Ecto-sp8_S_contig10216.355.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10216.355.1 vs. uniprot
Match: A0A6H5K9K3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9K3_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 3.580e-19
Identity = 41/75 (54.67%), Postives = 54/75 (72.00%), Query Frame = 1 
Query:  208 AKKARKSPARNGTNNCKTVSVQSRLKSFPGQGFTISNGKLYCGPCTRELSNDMDTVKTHIGQQKSRKAGSVNRHE 432
            AKK R+SP +NGTNN  T++ Q R++ F  QG  +SNG ++C PC ++LSND DT+KTH G  KSRK GS+  HE
Sbjct:   51 AKKTRRSPGKNGTNNATTITPQERVRKFKNQGLIVSNGHVFCEPCGKQLSNDSDTIKTHCGLAKSRKEGSIILHE 125
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10216.355.1 vs. uniprot
Match: A0A7S3EV18_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3EV18_9EUKA)

HSP 1 Score: 52.4 bits (124), Expect = 4.530e-5
Identity = 20/46 (43.48%), Postives = 30/46 (65.22%), Query Frame = 1 
Query:  262 VSVQSRLKSFPGQGFTISNGKLYCGPCTRELSNDMDTVKTHIGQQK 399
            VSV+ RL+ FPGQG   S G ++C PC  +L N   ++K H+ ++K
Sbjct:  177 VSVEQRLREFPGQGLRNSAGVVFCAPCKEQLPNIKGSIKDHVSRRK 222
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10216.355.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K9K3_9PHAE3.580e-1954.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3EV18_9EUKA4.530e-543.48Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10216contigEcto-sp8_S_contig10216:974..1405 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size432
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-00_006430.1
Cds size432
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143119.8877802-CDS-Ecto-sp8_S_contig10216:973..14051681143119.8877802-CDS-Ecto-sp8_S_contig10216:973..1405Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10216 974..1405 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10216.355.1prot_Ecto-sp8_S_contig10216.355.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10216 974..1405 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10216.355.1

>prot_Ecto-sp8_S_contig10216.355.1 ID=prot_Ecto-sp8_S_contig10216.355.1|Name=mRNA_Ecto-sp8_S_contig10216.355.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=144bp
APAASPAAAPALAAATVTAPSGPLSSWTVEKDSNQATDLFAHHLPKPSSQ
ARQRTETHTKRGGSAEGGQAKKARKSPARNGTNNCKTVSVQSRLKSFPGQ
GFTISNGKLYCGPCTRELSNDMDTVKTHIGQQKSRKAGSVNRHE
back to top

mRNA from alignment at Ecto-sp8_S_contig10216:974..1405+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10216.355.1 ID=mRNA_Ecto-sp8_S_contig10216.355.1|Name=mRNA_Ecto-sp8_S_contig10216.355.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=432bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10216:974..1405+ (Ectocarpus species8 EcLAC_412)
GCGCCAGCGGCATCACCAGCAGCAGCCCCGGCTCTCGCGGCAGCCACCGT
CACTGCTCCTAGCGGCCCGCTTTCGAGCTGGACAGTCGAGAAAGACTCCA
ATCAGGCGACCGATCTTTTCGCTCATCATCTCCCGAAGCCAAGTTCTCAG
GCCAGACAACGCACTGAGACACACACCAAAAGGGGCGGCAGCGCCGAGGG
AGGGCAGGCGAAGAAGGCGCGCAAAAGTCCCGCCAGGAATGGTACCAACA
ACTGCAAGACTGTTTCTGTTCAGTCCCGCTTGAAATCGTTTCCTGGCCAG
GGATTCACCATCAGCAACGGCAAACTTTACTGCGGCCCATGTACGAGGGA
ACTCAGCAACGACATGGACACCGTCAAGACGCACATCGGGCAGCAAAAAT
CTCGGAAGGCTGGATCGGTCAACAGACACGAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10216:974..1405+

>mRNA_Ecto-sp8_S_contig10216.355.1 ID=mRNA_Ecto-sp8_S_contig10216.355.1|Name=mRNA_Ecto-sp8_S_contig10216.355.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=432bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10216:974..1405+ (Ectocarpus species8 EcLAC_412)
GCGCCAGCGGCATCACCAGCAGCAGCCCCGGCTCTCGCGGCAGCCACCGT
CACTGCTCCTAGCGGCCCGCTTTCGAGCTGGACAGTCGAGAAAGACTCCA
ATCAGGCGACCGATCTTTTCGCTCATCATCTCCCGAAGCCAAGTTCTCAG
GCCAGACAACGCACTGAGACACACACCAAAAGGGGCGGCAGCGCCGAGGG
AGGGCAGGCGAAGAAGGCGCGCAAAAGTCCCGCCAGGAATGGTACCAACA
ACTGCAAGACTGTTTCTGTTCAGTCCCGCTTGAAATCGTTTCCTGGCCAG
GGATTCACCATCAGCAACGGCAAACTTTACTGCGGCCCATGTACGAGGGA
ACTCAGCAACGACATGGACACCGTCAAGACGCACATCGGGCAGCAAAAAT
CTCGGAAGGCTGGATCGGTCAACAGACACGAG
back to top