mRNA_Ecto-sp8_S_contig102119.347.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig102119.347.1
Unique NamemRNA_Ecto-sp8_S_contig102119.347.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig102119.347.1 vs. uniprot
Match: D8LCD2_ECTSI (CBM_25 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCD2_ECTSI)

HSP 1 Score: 106 bits (265), Expect = 6.480e-26
Identity = 48/50 (96.00%), Postives = 49/50 (98.00%), Query Frame = 1 
Query:    1 GLFDGADSLLYCGGFNGWDGEEDGVTMPMMPVGDEGNFRISINVPNFARV 150
            GLF+GADSLLYCGGFNGWDGEEDGVTMPMMP GDEGNFRISINVPNFARV
Sbjct:  121 GLFEGADSLLYCGGFNGWDGEEDGVTMPMMPAGDEGNFRISINVPNFARV 170
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BLAST of mRNA_Ecto-sp8_S_contig102119.347.1 vs. uniprot
Match: A0A835YX15_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX15_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 2.900e-6
Identity = 22/41 (53.66%), Postives = 30/41 (73.17%), Query Frame = 1 
Query:   25 LLYCGGFNGWDGEEDGVTMPMMPVGDEGNFRISINVPNFAR 147
            L YCGG+NGWDGEE  V +P++   D G ++ SI +PNFA+
Sbjct:   46 LFYCGGYNGWDGEETPVMVPLLRQRD-GRYKASITIPNFAK 85
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BLAST of mRNA_Ecto-sp8_S_contig102119.347.1 vs. uniprot
Match: A0A1X6PBW0_PORUM (CBM_25 domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PBW0_PORUM)

HSP 1 Score: 50.1 bits (118), Expect = 2.120e-5
Identity = 31/67 (46.27%), Postives = 37/67 (55.22%), Query Frame = 1 
Query:    1 GLFDGADSLLYCGGFNGWDGEEDGVTMPMMPVGD--EGNFRISINVPNFARVSKCFGGVLSQAFGGV 195
            GLF   D + Y GGFNGW  E D  T  + P      G++R+S+ VPNFARV   F  V   A GGV
Sbjct:  101 GLFTEDDVVCYAGGFNGWSSETD-TTPLLFPAQSLFNGSYRVSVVVPNFARVLD-FAFVQDAAAGGV 165
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig102119.347.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LCD2_ECTSI6.480e-2696.00CBM_25 domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A835YX15_9STRA2.900e-653.66Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A1X6PBW0_PORUM2.120e-546.27CBM_25 domain-containing protein n=1 Tax=Porphyra ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig102119contigEcto-sp8_S_contig102119:1..204 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score106.3
Seed ortholog evalue5.7e-21
Seed eggNOG ortholog2880.D8LCD2
Model size204
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.Starch/carbohydrate-binding module (family 53)
EggNOG OGs2F0FD@1,2T1M1@2759
Ec32 ortholog descriptionCarbohydrate binding module family 25
Ec32 orthologEc-14_005190.1
Cds size204
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143119.504617-CDS-Ecto-sp8_S_contig102119:0..2041681143119.504617-CDS-Ecto-sp8_S_contig102119:0..204Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig102119 1..204 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig102119.347.1prot_Ecto-sp8_S_contig102119.347.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig102119 1..204 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig102119.347.1

>prot_Ecto-sp8_S_contig102119.347.1 ID=prot_Ecto-sp8_S_contig102119.347.1|Name=mRNA_Ecto-sp8_S_contig102119.347.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=68bp
GLFDGADSLLYCGGFNGWDGEEDGVTMPMMPVGDEGNFRISINVPNFARV
SKCFGGVLSQAFGGVLA*
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mRNA from alignment at Ecto-sp8_S_contig102119:1..204+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig102119.347.1 ID=mRNA_Ecto-sp8_S_contig102119.347.1|Name=mRNA_Ecto-sp8_S_contig102119.347.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=204bp|location=Sequence derived from alignment at Ecto-sp8_S_contig102119:1..204+ (Ectocarpus species8 EcLAC_412)
GGGCTGTTCGACGGTGCGGACTCCCTTCTCTACTGCGGCGGCTTCAACGG
CTGGGACGGCGAGGAGGACGGGGTGACGATGCCCATGATGCCGGTGGGGG
ACGAGGGGAACTTCCGAATCAGCATCAACGTGCCCAACTTTGCTCGAGTG
AGTAAATGTTTTGGAGGAGTCTTGAGTCAAGCTTTTGGAGGAGTCTTGGC
ATAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig102119:1..204+

>mRNA_Ecto-sp8_S_contig102119.347.1 ID=mRNA_Ecto-sp8_S_contig102119.347.1|Name=mRNA_Ecto-sp8_S_contig102119.347.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=204bp|location=Sequence derived from alignment at Ecto-sp8_S_contig102119:1..204+ (Ectocarpus species8 EcLAC_412)
GGGCTGTTCGACGGTGCGGACTCCCTTCTCTACTGCGGCGGCTTCAACGG
CTGGGACGGCGAGGAGGACGGGGTGACGATGCCCATGATGCCGGTGGGGG
ACGAGGGGAACTTCCGAATCAGCATCAACGTGCCCAACTTTGCTCGAGTG
AGTAAATGTTTTGGAGGAGTCTTGAGTCAAGCTTTTGGAGGAGTCTTGGC
ATAG
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