mRNA_Ecto-sp8_S_contig10211.346.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10211.346.1
Unique NamemRNA_Ecto-sp8_S_contig10211.346.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10211.346.1 vs. uniprot
Match: D7FZJ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZJ4_ECTSI)

HSP 1 Score: 156 bits (394), Expect = 7.540e-42
Identity = 101/119 (84.87%), Postives = 102/119 (85.71%), Query Frame = 1 
Query:    1 WVALTDWTYVLTLPRECWGVDPPRDGXXXXXXXXXXXXXXXXXXXX--EDGDCGGRESRASAHEGGEASASLTAAAVGLLTFEGIDTFATIRVNGREIGRWSNQFMPATFALSGGILSE 351
            WVALTDWTYVLTLPR CW VDPPRDGXXXXXXXXXXX    XXXXX  EDGDCGGR  RASAHEGGEA     AAAVGLLTFEGIDTFAT+ VNG EIGRWSNQFMPATFALSGGILSE
Sbjct:   80 WVALTDWTYVLTLPRACWVVDPPRDGXXXXXXXXXXXCVDSXXXXXXXEDGDCGGRVRRASAHEGGEA----PAAAVGLLTFEGIDTFATVSVNGEEIGRWSNQFMPATFALSGGILSE 194
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10211.346.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FZJ4_ECTSI7.540e-4284.87Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10211contigEcto-sp8_S_contig10211:4151..4901 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score158.7
Seed ortholog evalue1.7e-36
Seed eggNOG ortholog2880.D7FZJ4
Preferred nameMANBA
Model size355
KEGG koko:K01192
KEGG Pathwayko00511,ko04142,map00511,map04142
Hectar predicted targeting categoryother localisation
GOsGO:0000323,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003824,GO:0004553,GO:0004567,GO:0005488,GO:0005537,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005766,GO:0005773,GO:0005774,GO:0005775,GO:0005886,GO:0005975,GO:0006464,GO:0006516,GO:0006807,GO:0006810,GO:0006887,GO:0006955,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009100,GO:0009311,GO:0009313,GO:0009987,GO:0012505,GO:0012506,GO:0015923,GO:0016020,GO:0016052,GO:0016192,GO:0016787,GO:0016798,GO:0019538,GO:0030141,GO:0030163,GO:0030246,GO:0030659,GO:0030667,GO:0031090,GO:0031410,GO:0031974,GO:0031982,GO:0032940,GO:0035577,GO:0036094,GO:0036211,GO:0036230,GO:0042119,GO:0042582,GO:0043170,GO:0043202,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043299,GO:0043312,GO:0043412,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044267,GO:0044421,GO:0044422,GO:0044424,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0046903,GO:0048029,GO:0050896,GO:0051179,GO:0051234,GO:0070013,GO:0071704,GO:0071944,GO:0097708,GO:0098588,GO:0098805,GO:0098852,GO:0099503,GO:1901135,GO:1901136,GO:1901564,GO:1901565,GO:1901575
Exons2
EggNOG free text desc.beta-mannosidase activity
EggNOG OGsCOG3250@1,KOG2230@2759
EC3.2.1.25
Cds size351
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143119.4582098-CDS-Ecto-sp8_S_contig10211:4150..44431681143119.4582098-CDS-Ecto-sp8_S_contig10211:4150..4443Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10211 4151..4443 +
1681143119.4697344-CDS-Ecto-sp8_S_contig10211:4841..48991681143119.4697344-CDS-Ecto-sp8_S_contig10211:4841..4899Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10211 4842..4899 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10211.346.1prot_Ecto-sp8_S_contig10211.346.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10211 4151..4899 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10211.346.1

>prot_Ecto-sp8_S_contig10211.346.1 ID=prot_Ecto-sp8_S_contig10211.346.1|Name=mRNA_Ecto-sp8_S_contig10211.346.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=117bp
WVALTDWTYVLTLPRECWGVDPPRDGGGGGGGRGGCVDSAGGGGGSEDGD
CGGRESRASAHEGGEASASLTAAAVGLLTFEGIDTFATIRVNGREIGRWS
NQFMPATFALSGGILSE
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mRNA from alignment at Ecto-sp8_S_contig10211:4151..4901+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10211.346.1 ID=mRNA_Ecto-sp8_S_contig10211.346.1|Name=mRNA_Ecto-sp8_S_contig10211.346.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=751bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10211:4151..4901+ (Ectocarpus species8 EcLAC_412)
TGGGTTGCGCTCACGGACTGGACGTACGTGCTCACGCTGCCCCGAGAGTG
CTGGGGCGTCGATCCACCAAGGGACGGCGGCGGTGGCGGCGGCGGCCGCG
GTGGTTGTGTGGACAGCGCCGGTGGCGGTGGTGGTAGTGAAGATGGTGAT
TGCGGTGGACGCGAAAGTCGTGCATCGGCTCATGAGGGAGGGGAGGCATC
GGCGTCACTCACAGCAGCAGCGGTGGGCCTGCTAACGTTCGAAGGCATCG
ACACGTTCGCCACCATCCGGGTGAACGGACGAGAGATCGGGAGGTATGCT
TGACCTGGGGACACAGAGAACACCATGCTGCGCTTGAGGTTACATTGGAA
TATCGCAAAGTTGAAGTCCATCCTGATCGAAGCGTTGGCATGGTCTATGA
AGGACAAGAATATCAAGCACTACAGTGACCACAACGGCGACGACAACCAC
CAGGGAACAACAGCAATATTAGCCGCAGCAGCAGCAGCAGCAGCAGCAAC
AACAGCAACAAAACCAACACAAACAATACCAAAAACTATCTTCTTCGGTT
TCACGCTTGATGTCGTCATCAGCACGTTGTCTGACAAGCTGTTGGCGTAA
ATGTCGGCTGGTTCCCGAACACTGCAGTACGTTCAGTTCGACAGCTCCCC
TGCCGTCGATTCTTCCCATTGTTCGATTCTATTTTCAGCAGGTGGTCCAA
CCAATTCATGCCAGCAACGTTTGCCCTGAGCGGAGGCATCCTGTCGGAGC
T
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10211:4151..4901+

>mRNA_Ecto-sp8_S_contig10211.346.1 ID=mRNA_Ecto-sp8_S_contig10211.346.1|Name=mRNA_Ecto-sp8_S_contig10211.346.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=351bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10211:4151..4901+ (Ectocarpus species8 EcLAC_412)
TGGGTTGCGCTCACGGACTGGACGTACGTGCTCACGCTGCCCCGAGAGTG
CTGGGGCGTCGATCCACCAAGGGACGGCGGCGGTGGCGGCGGCGGCCGCG
GTGGTTGTGTGGACAGCGCCGGTGGCGGTGGTGGTAGTGAAGATGGTGAT
TGCGGTGGACGCGAAAGTCGTGCATCGGCTCATGAGGGAGGGGAGGCATC
GGCGTCACTCACAGCAGCAGCGGTGGGCCTGCTAACGTTCGAAGGCATCG
ACACGTTCGCCACCATCCGGGTGAACGGACGAGAGATCGGGAGGTGGTCC
AACCAATTCATGCCAGCAACGTTTGCCCTGAGCGGAGGCATCCTGTCGGA
G
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