mRNA_Ecto-sp8_S_contig10207.339.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10207.339.1
Unique NamemRNA_Ecto-sp8_S_contig10207.339.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10207.339.1 vs. uniprot
Match: A0A6H5KC01_9PHAE (SUZ domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC01_9PHAE)

HSP 1 Score: 302 bits (773), Expect = 3.940e-89
Identity = 349/477 (73.17%), Postives = 355/477 (74.42%), Query Frame = 1 
Query:   25 RGSRRPAVNAGEWKGQRGMQRNRMAEKSDPDFVRNYDNYRPSFAPYRQLADPGGGRGGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAMMSAAVQHAHGQAAHAMMAIPAGMQGHQLRGQMPGQPGVLLVQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPSVYGAAVPGHAMYAAQGYVDPAQAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQPHHXXHVQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLLPTXXXXXQQGQQQQPXXXXXXXXXPQTGLLQTPQVPTSLAMTSGYMTAQDFYASQQPQQAIYYPQDPSMQGVAMGYTVQQPHLAHHPHQQAFVVPVQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRGAGXXXXXXXXXXXXANRGYQSDFPPLN 1455
            RGSRRPAVNAGEWKGQRGMQRNRMAEKSDPDFVRNYD+YRPSFAPYRQLADPGGG GG    XXXXXXXXXXX               AMMSAAVQHAHGQAAHAMMAIPAGMQGHQLRGQMPGQ     +  XXXXXXXXX                     APSVYGAAVPGHAMYAAQGYVDPAQAAXXXXXXXXXXXXXX     XXX                                  ++  XXXXXXXXX     XXXXXXXXXXXXXXX  X   P       +GQQQQPXXXXXXX   QTGLLQTPQVPTSLAMTSGYMTAQDFY +QQPQQAIYYPQDPSMQGVAMGYTVQQPHLAHHPHQQAFVVPVQ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX           GRGAGXXXXXXXXXXXXANRGYQSDFPPLN
Sbjct:  574 RGSRRPAVNAGEWKGQRGMQRNRMAEKSDPDFVRNYDHYRPSFAPYRQLADPGGGGGG-GRGXXXXXXXXXXXQQPQPSPRLLQQHPHAMMSAAVQHAHGQAAHAMMAIPAGMQGHQLRGQMPGQMEAQAMXXXXXXXXXXXGG-------------------APSVYGAAVPGHAMYAAQGYVDPAQAAXXXXXXXXXXXXXXAPGVSXXXGST-------------------------------MRGQXXXXXXXXXQPRQHXXXXXXXXXXXXXXXQPXXXXPAAH----RGQQQQPXXXXXXX---QTGLLQTPQVPTSLAMTSGYMTAQDFYGAQQPQQAIYYPQDPSMQGVAMGYTVQQPHLAHHPHQQAFVVPVQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------GRGAGXXXXXXXXXXXXANRGYQSDFPPLN 981
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BLAST of mRNA_Ecto-sp8_S_contig10207.339.1 vs. uniprot
Match: D8LM72_ECTSI (R3H domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM72_ECTSI)

HSP 1 Score: 170 bits (431), Expect = 4.650e-42
Identity = 120/122 (98.36%), Postives = 120/122 (98.36%), Query Frame = 1 
Query:   34 RRPAVNAGEWKGQRGMQRNRMAEKSDPDFVRNYDNYRPSFAPYRQLADPGGGRGGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAMMSAAVQHAHGQAAHAMMAIPAGMQGHQLRGQMPGQ 399
            RRPAVNAGEWKGQRGMQRNRMAEKSDPDFVRNYDNYRPSFAPYRQLADPGG RGGR XXXXXXXXXXXXXXXXXXXXXXXXXXXXAMMSAAVQHAHGQAAHAMMAIPAGMQGHQLRGQMPGQ
Sbjct:  694 RRPAVNAGEWKGQRGMQRNRMAEKSDPDFVRNYDNYRPSFAPYRQLADPGG-RGGRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXAMMSAAVQHAHGQAAHAMMAIPAGMQGHQLRGQMPGQ 814
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10207.339.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KC01_9PHAE3.940e-8973.17SUZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LM72_ECTSI4.650e-4298.36R3H domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10207contigEcto-sp8_S_contig10207:4395..6930 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1458
Hectar predicted targeting categoryother localisation
Exons4
Cds size1458
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143118.7778945-CDS-Ecto-sp8_S_contig10207:4394..47911681143118.7778945-CDS-Ecto-sp8_S_contig10207:4394..4791Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10207 4395..4791 -
1681143118.7869925-CDS-Ecto-sp8_S_contig10207:5044..57061681143118.7869925-CDS-Ecto-sp8_S_contig10207:5044..5706Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10207 5045..5706 -
1681143118.7956147-CDS-Ecto-sp8_S_contig10207:6102..62311681143118.7956147-CDS-Ecto-sp8_S_contig10207:6102..6231Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10207 6103..6231 -
1681143118.8052065-CDS-Ecto-sp8_S_contig10207:6660..69301681143118.8052065-CDS-Ecto-sp8_S_contig10207:6660..6930Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10207 6661..6930 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10207.339.1prot_Ecto-sp8_S_contig10207.339.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10207 4395..6930 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10207.339.1

>prot_Ecto-sp8_S_contig10207.339.1 ID=prot_Ecto-sp8_S_contig10207.339.1|Name=mRNA_Ecto-sp8_S_contig10207.339.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=486bp
GGGGGGGGRGSRRPAVNAGEWKGQRGMQRNRMAEKSDPDFVRNYDNYRPS
FAPYRQLADPGGGRGGRGGGRDGPGGQQPQPSPRLLQQHPQQQQQHAMMS
AAVQHAHGQAAHAMMAIPAGMQGHQLRGQMPGQPGVLLVQQQQPWQQHQQ
QMEAQAMAAAAAAAAAAAGGGAPSVYGAAVPGHAMYAAQGYVDPAQAAAA
AAAAAAAAAATGGAAPGASGVAGSTMRGQQQHHHHQPRQQQQQQQQQQPH
HQQHVQHHQQPHAQQPAAHHVQQQQQHLSYIHPQQQQQQPGLLPTTTQQQ
QQGQQQQPQQQPQQQPQPQTGLLQTPQVPTSLAMTSGYMTAQDFYASQQP
QQAIYYPQDPSMQGVAMGYTVQQPHLAHHPHQQAFVVPVQQQQQQTQPQQ
QQQQQQPQHHPYQHHVYPVGAMQQQPVPQQHRQQQQQQQHGNHQQQHHQG
GGGGGGRGAGRGGGGAGGGRGGANRGYQSDFPPLN*
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mRNA from alignment at Ecto-sp8_S_contig10207:4395..6930-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10207.339.1 ID=mRNA_Ecto-sp8_S_contig10207.339.1|Name=mRNA_Ecto-sp8_S_contig10207.339.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=2536bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10207:4395..6930- (Ectocarpus species8 EcLAC_412)
GGGGGGGGGGGGGGGGGGGGGGGCAGGGGCAGCAGAAGGCCCGCCGTGAA
CGCGGGGGAGTGGAAGGGGCAGAGAGGCATGCAGCGCAACCGCATGGCGG
AGAAGTCGGACCCAGACTTCGTCCGCAACTACGACAACTACCGCCCGAGC
TTCGCGCCGTACCGACAGCTGGCGGACCCCGGGGGGGGAAGGGGGGGCAG
GGGAGGAGGAAGGGACGGGCCTGGGGGGCAGCAGCCGCAGCCTTCGCCGC
GATTGCTCCAGCAGCACCCGGTGAGGGTATTAGTGGTTTAGTTGGGCCGT
GTCGTTGTGTTTTTTGTTTCACGAAGAGCAGGATTGTGTTGGTTGTTGGT
TGCTGGTTGTTGGAGGACTTGCTCCGCTAAGAGCGACGGGTATGACCGAG
AGCCTTTTTGAGTTGGTGCGAAGTTGAGAATCTACAAGGGGCAAAAGGCG
TTGTTTTTGCCCTTCTTGGGGTCATTTCAAAAGGCGTTGTTTTGCCCTTC
TTGGGGTCATTTTTTATGTGTGTTTGGTGTATTCACAATCTTGCCCCCCC
CCCCCGTGTGGTTGCTTTTCGGAGATTCGTATAGTGCGTAGCAAGAGCAA
CAGCAGATTGGGTTTGGCGACTTTCTGCGGACGGTGCGCTTGCTCACTCT
CACCCCCGACCCCCTTCCGTGCCTTTTCGACTCGCGGCATGTTCAGCAGC
AGCAGCAGCAGCAGCACGCGATGATGAGCGCCGCGGTGCAGCACGCCCAC
GGGCAGGCCGCGCACGCCATGATGGCGATTCCGGCCGGTATGCAAGGACA
CCAGCTTCGCGGACAGATGCCTGGACAGGTGTGTAAACCGTGGGGGTGGT
GCTTGCCTCTCTTCGTTTCGTCGCAACGTTTTTAGAAAGTTACTTACATG
ACAGTGAGTGCCCGTTCGAGATAATACATACCACAGCGGTCGAAGGGGAT
GTGTTGTTGTTGTTGTTGTTGTTGGGTGCTGAGTTTTGCTTACTGGGTGT
TGTTTGTTTGTGGCGGCGCGGCCCGACAATGCTACCGTCCATAAGACGAT
GCTATTGGGAGCTTCGGCTCGCAGCGGGCTTTTCATCGGTACGTCATCCA
TCCCTCTCCTAGTGGCGATATGTTTGCCGTGCTTTTTTCATGTCGAGAAG
CGGGTTGCACCCCACAATTGAAGGCTGACCGATGCCCCCCCTCTTCCCCC
GCATGTTTTCTATCCACGCCACAGCCTGGCGTACTATTGGTGCAGCAGCA
GCAACCCTGGCAGCAGCACCAGCAGCAGATGGAGGCCCAGGCCATGGCGG
CGGCCGCCGCGGCCGCCGCCGCCGCTGCAGGGGGGGGAGCGCCGTCAGTC
TACGGCGCGGCTGTCCCGGGACATGCGATGTACGCCGCCCAGGGGTACGT
GGACCCTGCGCAGGCCGCTGCTGCCGCTGCCGCCGCCGCCGCTGCTGCTG
CTGCCACTGGTGGAGCGGCGCCCGGGGCCAGCGGTGTCGCAGGGTCGACG
ATGCGCGGCCAGCAGCAGCACCACCACCACCAACCCAGGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCCGCACCACCAGCAACACGTGCAGCACCATC
AGCAGCCGCATGCTCAGCAACCGGCGGCGCACCATGTACAGCAGCAGCAG
CAACATTTGAGCTACATCCACCCACAGCAGCAGCAGCAGCAACCGGGGTT
GCTGCCGACAACGACGCAGCAGCAGCAGCAGGGCCAGCAGCAGCAGCCGC
AGCAGCAGCCGCAGCAGCAGCCGCAGCCACAAACCGGTCTTTTGCAGACG
CCGCAAGTGCCGACGAGCCTGGCCATGACCAGCGGGTACATGACGGCGCA
GGACTTCTACGCGTCGCAGCAGCCGCAGCAGGCAATGTGAGAAACGCTCT
CTTGTCCGTGGACGTGTTTTTTGTATTTTGGTGTACATACATGGATTTGC
TTGCCTGGCCGATGGGCGTCAGAGTGATATGTCGCGCTGCTGCTGCTGTG
TTGGGGATGAAACAACACGATCGTGCGTTTCAATTTAAGCTTTGGCTTTG
GTTGAGTGCCGCCAAGCCCCTTTCCCGTATCCGCACCCGTTGACGTGCTT
TCCCTTCTTTTCTTTTTTTTCCACGCTCCGTTTGAGCAGCTACTACCCGC
AGGACCCAAGCATGCAGGGCGTGGCCATGGGGTACACCGTTCAGCAGCCG
CACCTCGCCCATCACCCCCACCAGCAGGCCTTCGTTGTCCCCGTACAGCA
GCAGCAGCAGCAGACCCAGCCGCAGCAGCAGCAGCAGCAGCAGCAGCCGC
AACATCACCCTTACCAGCACCACGTGTATCCGGTGGGAGCGATGCAACAG
CAGCCCGTACCTCAGCAGCATCGCCAGCAGCAGCAGCAGCAGCAGCACGG
GAACCACCAGCAGCAACACCATCAGGGCGGAGGGGGCGGAGGGGGGCGAG
GGGCAGGCCGAGGCGGGGGCGGCGCTGGCGGGGGGCGGGGGGGCGCTAAC
CGGGGCTACCAGAGTGATTTTCCGCCGCTAAACTGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10207:4395..6930-

>mRNA_Ecto-sp8_S_contig10207.339.1 ID=mRNA_Ecto-sp8_S_contig10207.339.1|Name=mRNA_Ecto-sp8_S_contig10207.339.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=1458bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10207:4395..6930- (Ectocarpus species8 EcLAC_412)
GGGGGGGGGGGGGGGGGGGGGGGCAGGGGCAGCAGAAGGCCCGCCGTGAA
CGCGGGGGAGTGGAAGGGGCAGAGAGGCATGCAGCGCAACCGCATGGCGG
AGAAGTCGGACCCAGACTTCGTCCGCAACTACGACAACTACCGCCCGAGC
TTCGCGCCGTACCGACAGCTGGCGGACCCCGGGGGGGGAAGGGGGGGCAG
GGGAGGAGGAAGGGACGGGCCTGGGGGGCAGCAGCCGCAGCCTTCGCCGC
GATTGCTCCAGCAGCACCCGCAGCAGCAGCAGCAGCACGCGATGATGAGC
GCCGCGGTGCAGCACGCCCACGGGCAGGCCGCGCACGCCATGATGGCGAT
TCCGGCCGGTATGCAAGGACACCAGCTTCGCGGACAGATGCCTGGACAGC
CTGGCGTACTATTGGTGCAGCAGCAGCAACCCTGGCAGCAGCACCAGCAG
CAGATGGAGGCCCAGGCCATGGCGGCGGCCGCCGCGGCCGCCGCCGCCGC
TGCAGGGGGGGGAGCGCCGTCAGTCTACGGCGCGGCTGTCCCGGGACATG
CGATGTACGCCGCCCAGGGGTACGTGGACCCTGCGCAGGCCGCTGCTGCC
GCTGCCGCCGCCGCCGCTGCTGCTGCTGCCACTGGTGGAGCGGCGCCCGG
GGCCAGCGGTGTCGCAGGGTCGACGATGCGCGGCCAGCAGCAGCACCACC
ACCACCAACCCAGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCGCAC
CACCAGCAACACGTGCAGCACCATCAGCAGCCGCATGCTCAGCAACCGGC
GGCGCACCATGTACAGCAGCAGCAGCAACATTTGAGCTACATCCACCCAC
AGCAGCAGCAGCAGCAACCGGGGTTGCTGCCGACAACGACGCAGCAGCAG
CAGCAGGGCCAGCAGCAGCAGCCGCAGCAGCAGCCGCAGCAGCAGCCGCA
GCCACAAACCGGTCTTTTGCAGACGCCGCAAGTGCCGACGAGCCTGGCCA
TGACCAGCGGGTACATGACGGCGCAGGACTTCTACGCGTCGCAGCAGCCG
CAGCAGGCAATCTACTACCCGCAGGACCCAAGCATGCAGGGCGTGGCCAT
GGGGTACACCGTTCAGCAGCCGCACCTCGCCCATCACCCCCACCAGCAGG
CCTTCGTTGTCCCCGTACAGCAGCAGCAGCAGCAGACCCAGCCGCAGCAG
CAGCAGCAGCAGCAGCAGCCGCAACATCACCCTTACCAGCACCACGTGTA
TCCGGTGGGAGCGATGCAACAGCAGCCCGTACCTCAGCAGCATCGCCAGC
AGCAGCAGCAGCAGCAGCACGGGAACCACCAGCAGCAACACCATCAGGGC
GGAGGGGGCGGAGGGGGGCGAGGGGCAGGCCGAGGCGGGGGCGGCGCTGG
CGGGGGGCGGGGGGGCGCTAACCGGGGCTACCAGAGTGATTTTCCGCCGC
TAAACTGA
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