mRNA_Ecto-sp8_S_contig10204.335.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10204.335.1
Unique NamemRNA_Ecto-sp8_S_contig10204.335.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10204.335.1 vs. uniprot
Match: D7FM36_ECTSI (Dihydrolipoamide S-acetyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM36_ECTSI)

HSP 1 Score: 170 bits (431), Expect = 2.940e-47
Identity = 88/92 (95.65%), Postives = 89/92 (96.74%), Query Frame = 1 
Query:    1 GIGARVGETTTGDGDDANTNLLEPTSPPQTFDTRFSSMANLADAENGGLDGLDGSPAGSTDSDRGETPEPLENRADIPGCEESGGSERPHQR 276
            GIGARVGET TGDGDDANTNLLEPTSPPQTFD+RFSSMANLADAENGGLDGLDGSPAGSTDSDRG TPEPLENRADI GCEESGGSERPHQR
Sbjct:  470 GIGARVGETATGDGDDANTNLLEPTSPPQTFDSRFSSMANLADAENGGLDGLDGSPAGSTDSDRGVTPEPLENRADIRGCEESGGSERPHQR 561
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BLAST of mRNA_Ecto-sp8_S_contig10204.335.1 vs. uniprot
Match: A0A6H5L5F9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5F9_9PHAE)

HSP 1 Score: 158 bits (400), Expect = 1.460e-44
Identity = 81/92 (88.04%), Postives = 85/92 (92.39%), Query Frame = 1 
Query:    1 GIGARVGETTTGDGDDANTNLLEPTSPPQTFDTRFSSMANLADAENGGLDGLDGSPAGSTDSDRGETPEPLENRADIPGCEESGGSERPHQR 276
            GIGARVG+TT GDGDDA+TNLL+PT PPQTFDTRFSSMANL+DAENGGLDGLDGSPA STDSDRG  PEP ENRAD PGCEESGGSERPHQR
Sbjct:    4 GIGARVGDTTNGDGDDADTNLLDPTGPPQTFDTRFSSMANLSDAENGGLDGLDGSPARSTDSDRGVRPEPHENRADTPGCEESGGSERPHQR 95
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10204.335.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FM36_ECTSI2.940e-4795.65Dihydrolipoamide S-acetyltransferase n=1 Tax=Ectoc... [more]
A0A6H5L5F9_9PHAE1.460e-4488.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10204contigEcto-sp8_S_contig10204:5819..6096 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score175.3
Seed ortholog evalue1.4e-41
Seed eggNOG ortholog2880.D7FM36
Model size280
KEGG rclassRC00004,RC02742,RC02857
KEGG koko:K00627,ko:K04371,ko:K04412
KEGG ReactionR00209,R02569
KEGG Pathwayko00010,ko00020,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,ko01521,ko01522,ko01524,ko04010,ko04011,ko04012,ko04013,ko04014,ko04015,ko04022,ko04024,ko04062,ko04066,ko04068,ko04071,ko04072,ko04114,ko04140,ko04150,ko04151,ko04210,ko04214,ko04218,ko04261,ko04270,ko04320,ko04350,ko04360,ko04370,ko04371,ko04380,ko04390,ko04391,ko04392,ko04510,ko04520,ko04540,ko04550,ko04611,ko04620,ko04621,ko04650,ko04657,ko04658,ko04659,ko04660,ko04662,ko04664,ko04666,ko04668,ko04713,ko04720,ko04722,ko04723,ko04724,ko04725,ko04726,ko04730,ko04810,ko04910,ko04912,ko04914,ko04915,ko04916,ko04917,ko04919,ko04921,ko04926,ko04930,ko04933,ko04934,ko04960,ko05010,ko05020,ko05034,ko05131,ko05132,ko05133,ko05140,ko05142,ko05145,ko05152,ko05160,ko05161,ko05164,ko05165,ko05167,ko05200,ko05203,ko05205,ko05210,ko05211,ko05212,ko05213,ko05214,ko05215,ko05216,ko05218,ko05219,ko05220,ko05221,ko05223,ko05224,ko05225,ko05226,ko05230,ko05231,map00010,map00020,map00620,map01100,map01110,map01120,map01130,map01200,map01521,map01522,map01524,map04010,map04011,map04012,map04013,map04014,map04015,map04022,map04024,map04062,map04066,map04068,map04071,map04072,map04114,map04140,map04150,map04151,map04210,map04214,map04218,map04261,map04270,map04320,map04350,map04360,map04370,map04371,map04380,map04390,map04391,map04392,map04510,map04520,map04540,map04550,map04611,map04620,map04621,map04650,map04657,map04658,map04659,map04660,map04662,map04664,map04666,map04668,map04713,map04720,map04722,map04723,map04724,map04725,map04726,map04730,map04810,map04910,map04912,map04914,map04915,map04916,map04917,map04919,map04921,map04926,map04930,map04933,map04934,map04960,map05010,map05020,map05034,map05131,map05132,map05133,map05140,map05142,map05145,map05152,map05160,map05161,map05164,map05165,map05167,map05200,map05203,map05205,map05210,map05211,map05212,map05213,map05214,map05215,map05216,map05218,map05219,map05220,map05221,map05223,map05224,map05225,map05226,map05230,map05231
KEGG ModuleM00307,M00683,M00687
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.dihydrolipoyllysine-residue acetyltransferase activity
EggNOG OGsCOG0508@1,KOG0557@2759,KOG0660@1,KOG0660@2759
EC2.3.1.12,2.7.11.24
Cds size276
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01601,ko00000,ko00001,ko00002,ko01000,ko01001,ko03036,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143118.6228907-CDS-Ecto-sp8_S_contig10204:5818..60941681143118.6228907-CDS-Ecto-sp8_S_contig10204:5818..6094Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10204 5819..6094 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10204.335.1prot_Ecto-sp8_S_contig10204.335.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10204 5819..6094 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10204.335.1

>prot_Ecto-sp8_S_contig10204.335.1 ID=prot_Ecto-sp8_S_contig10204.335.1|Name=mRNA_Ecto-sp8_S_contig10204.335.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=92bp
GIGARVGETTTGDGDDANTNLLEPTSPPQTFDTRFSSMANLADAENGGLD
GLDGSPAGSTDSDRGETPEPLENRADIPGCEESGGSERPHQR
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mRNA from alignment at Ecto-sp8_S_contig10204:5819..6096+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10204.335.1 ID=mRNA_Ecto-sp8_S_contig10204.335.1|Name=mRNA_Ecto-sp8_S_contig10204.335.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=278bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10204:5819..6096+ (Ectocarpus species8 EcLAC_412)
GGGATCGGGGCGAGGGTAGGGGAGACCACAACCGGCGATGGGGACGACGC
CAATACTAATCTCTTGGAACCCACCAGCCCGCCCCAGACGTTTGACACAC
GGTTCAGCTCCATGGCGAACCTTGCAGACGCGGAAAACGGAGGTCTCGAT
GGCTTGGATGGGTCCCCGGCCGGTAGCACCGATTCAGACCGGGGGGAGAC
ACCTGAACCTCTTGAGAACCGCGCCGACATCCCAGGTTGTGAGGAAAGCG
GGGGGAGTGAGAGGCCCCATCAGCGAGG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10204:5819..6096+

>mRNA_Ecto-sp8_S_contig10204.335.1 ID=mRNA_Ecto-sp8_S_contig10204.335.1|Name=mRNA_Ecto-sp8_S_contig10204.335.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=276bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10204:5819..6096+ (Ectocarpus species8 EcLAC_412)
GGGATCGGGGCGAGGGTAGGGGAGACCACAACCGGCGATGGGGACGACGC
CAATACTAATCTCTTGGAACCCACCAGCCCGCCCCAGACGTTTGACACAC
GGTTCAGCTCCATGGCGAACCTTGCAGACGCGGAAAACGGAGGTCTCGAT
GGCTTGGATGGGTCCCCGGCCGGTAGCACCGATTCAGACCGGGGGGAGAC
ACCTGAACCTCTTGAGAACCGCGCCGACATCCCAGGTTGTGAGGAAAGCG
GGGGGAGTGAGAGGCCCCATCAGCGA
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