mRNA_Ecto-sp8_S_contig1020.328.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig1020.328.1
Unique NamemRNA_Ecto-sp8_S_contig1020.328.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig1020.328.1 vs. uniprot
Match: D7FKH7_ECTSI (40S ribosomal protein S3a n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKH7_ECTSI)

HSP 1 Score: 501 bits (1291), Expect = 2.510e-179
Identity = 253/254 (99.61%), Postives = 254/254 (100.00%), Query Frame = 1 
Query:    1 GKTNKKGGRKGNKKKTVDPMTLKEWYDIKAPSIFQVRNPGKTLVTRTKGTKIASEGLKGRVFEFSLGDLNADEDLGYRKVKLCCEDVQGTSVLTNFHGMDLTRDKLCSLIKKWQTLIEGQVDVRTTDGYLLRISCIGFTKKQDNQIKQTCYAQASQIRAVRKKMCDIMSEEASKCDLRELVLKFIPENISGEILKAVQSIYPMQNVYIRKVKALKKPKFDLTKLMEMHGDNTTEDVGMEMEREDEGEEAVVADE 762
            GKTNKKGGRKGNKKKTVDPMTLKEWYDIKAPSIFQVRNPGKTLVTRTKGTKIASEGLKGRVFEFSLGDLNADEDLGYRKVKLCCEDVQGTSVLTNFHGMDLTRDKLCSLIKKWQTLIEGQVDVRTTDGYLLRISCIGFTKKQDNQIKQTCYAQASQIRAVRKKMCDIMSEEASKCDLRELVLKFIPENISGEILKAVQSIYPMQNVYIRKVKALKKPKFDLTKLMEMHGDNTTED+GMEMEREDEGEEAVVADE
Sbjct:    4 GKTNKKGGRKGNKKKTVDPMTLKEWYDIKAPSIFQVRNPGKTLVTRTKGTKIASEGLKGRVFEFSLGDLNADEDLGYRKVKLCCEDVQGTSVLTNFHGMDLTRDKLCSLIKKWQTLIEGQVDVRTTDGYLLRISCIGFTKKQDNQIKQTCYAQASQIRAVRKKMCDIMSEEASKCDLRELVLKFIPENISGEILKAVQSIYPMQNVYIRKVKALKKPKFDLTKLMEMHGDNTTEDIGMEMEREDEGEEAVVADE 257
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BLAST of mRNA_Ecto-sp8_S_contig1020.328.1 vs. uniprot
Match: A0A835Z1K4_9STRA (40S ribosomal protein S3a n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1K4_9STRA)

HSP 1 Score: 351 bits (900), Expect = 1.080e-119
Identity = 177/243 (72.84%), Postives = 200/243 (82.30%), Query Frame = 1 
Query:    1 GKTNKKGGRKGN-KKKTVDPMTLKEWYDIKAPSIFQVRNPGKTLVTRTKGTKIASEGLKGRVFEFSLGDLNADEDLGYRKVKLCCEDVQGTSVLTNFHGMDLTRDKLCSLIKKWQTLIEGQVDVRTTDGYLLRISCIGFTKKQDNQIKQTCYAQASQIRAVRKKMCDIMSEEASKCDLRELVLKFIPENISGEILKAVQSIYPMQNVYIRKVKALKKPKFDLTKLMEMHGDNTTEDVGMEMER 726
            GKT KK G+KG  KKKTVDP T KEWYDIKAPS F VRN GKTL+TRT GTKIASEGLKGRVFE SLGDLN DE+ G+RK+KLCCEDVQGT+ LT FHGMDLTRDKLCSLIKKWQTLIE QVDVRTTDGY LR+ CIGFTKK D Q+K TCYA+A+Q+RA+R+KM +IM++E SKCDL+ELV KF+ + +S  I KA + I P+QNV IRK K LKKPKFDLTKLMEMH    TED G  + R
Sbjct:    4 GKTQKKIGKKGKGKKKTVDPFTRKEWYDIKAPSTFAVRNAGKTLITRTTGTKIASEGLKGRVFEVSLGDLNNDEEHGFRKIKLCCEDVQGTNCLTTFHGMDLTRDKLCSLIKKWQTLIEAQVDVRTTDGYYLRVFCIGFTKKTDGQVKATCYAKAAQVRAIRRKMTEIMTDECSKCDLKELVQKFVLDTVSERITKAARGIVPLQNVLIRKCKVLKKPKFDLTKLMEMH----TEDAGAAVAR 242
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BLAST of mRNA_Ecto-sp8_S_contig1020.328.1 vs. uniprot
Match: A0A7S2Y1J4_9STRA (40S ribosomal protein S3a n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1J4_9STRA)

HSP 1 Score: 350 bits (897), Expect = 7.120e-119
Identity = 174/238 (73.11%), Postives = 199/238 (83.61%), Query Frame = 1 
Query:   25 RKGNKKKTVDPMTLKEWYDIKAPSIFQVRNPGKTLVTRTKGTKIASEGLKGRVFEFSLGDLNADEDLGYRKVKLCCEDVQGTSVLTNFHGMDLTRDKLCSLIKKWQTLIEGQVDVRTTDGYLLRISCIGFTKKQDNQIKQTCYAQASQIRAVRKKMCDIMSEEASKCDLRELVLKFIPENISGEILKAVQSIYPMQNVYIRKVKALKKPKFDLTKLMEMHGDNTTEDVGMEMEREDEG 738
            +KG KKK  DP   KEWYD+KAPS F  R PGKTL+TRT+GTKIASEGL+GRVFEFSL DLN DE+  YRK+KLC E+VQGTS LTNFHGMDLTRDKLCSLIKKWQTLIE +VDV+TTDGY +R+ CIGFTK+  NQIK+T YAQASQ++A+RKKM DIM+EEA KCDL+ELV KFIPE+IS EI KA Q I+P+QNV+IRKVK LKKP+FDL KLMEMHGD   EDVG  + R  EG
Sbjct:   38 KKGGKKKITDPFLKKEWYDVKAPSFFSNRTPGKTLITRTQGTKIASEGLQGRVFEFSLADLNHDEEQAYRKIKLCVEEVQGTSCLTNFHGMDLTRDKLCSLIKKWQTLIEARVDVKTTDGYFMRLFCIGFTKRMPNQIKKTAYAQASQVKAIRKKMVDIMTEEAVKCDLKELVAKFIPESISTEIEKACQGIFPLQNVFIRKVKMLKKPRFDLIKLMEMHGDGG-EDVGAGVSRGAEG 274
[Close]
BLAST of mRNA_Ecto-sp8_S_contig1020.328.1 vs. uniprot
Match: C5XD92_SORBI (40S ribosomal protein S3a n=6 Tax=Andropogoneae TaxID=147429 RepID=C5XD92_SORBI)

HSP 1 Score: 335 bits (859), Expect = 1.930e-113
Identity = 166/243 (68.31%), Postives = 200/243 (82.30%), Query Frame = 1 
Query:   22 GRKGNKKKTVDPMTLKEWYDIKAPSIFQVRNPGKTLVTRTKGTKIASEGLKGRVFEFSLGDLNADEDLGYRKVKLCCEDVQGTSVLTNFHGMDLTRDKLCSLIKKWQTLIEGQVDVRTTDGYLLRISCIGFTKKQDNQIKQTCYAQASQIRAVRKKMCDIMSEEASKCDLRELVLKFIPENISGEILKAVQSIYPMQNVYIRKVKALKKPKFDLTKLMEMHGDNTTEDVGMEMEREDEGEEAV 750
            G+KG KKKTVDP + K+WYDIKAPS+F VRN GKTLV+RT+GTKIASEGLK RVFE SL DL +DED  YRK++L  ED+QG +VLTNF GM  T DKL SL+KKWQTLIE  VDV+TTD Y+LR+ CIGFTK++ NQ+K+TCYAQASQIR +R+KM +IMS +AS CDL+ELV KFIPE I  EI KA  SI+P+QNV+IRKVK LK PKFD+ KLME+HGD   EDVG++M+R  EG+EA+
Sbjct:   12 GKKGGKKKTVDPFSKKDWYDIKAPSVFSVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQSDEDQAYRKIRLRAEDIQGRNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMTEIMSNQASTCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVFIRKVKILKAPKFDIGKLMEVHGDYAKEDVGVKMDRPAEGDEAM 254
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BLAST of mRNA_Ecto-sp8_S_contig1020.328.1 vs. uniprot
Match: F0YJC6_AURAN (40S ribosomal protein S3a n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YJC6_AURAN)

HSP 1 Score: 333 bits (855), Expect = 9.630e-113
Identity = 164/245 (66.94%), Postives = 193/245 (78.78%), Query Frame = 1 
Query:   25 RKGNKKKTVDPMTLKEWYDIKAPSIFQVRNPGKTLVTRTKGTKIASEGLKGRVFEFSLGDLNADEDLGYRKVKLCCEDVQGTSVLTNFHGMDLTRDKLCSLIKKWQTLIEGQVDVRTTDGYLLRISCIGFTKKQDNQIKQTCYAQASQIRAVRKKMCDIMSEEASKCDLRELVLKFIPENISGEILKAVQSIYPMQNVYIRKVKALKKPKFDLTKLMEMHGDNTTEDVGMEMEREDEGEEAVVAD 759
            +KG KKK  DP   KEWY+IKAPS+F  RN GKTLVTRT+GTKIAS+ LKGRVF+ SL DLN DED  YRK+KL CED+QG + LTNFHGMD+TRDKL SLIKKWQTLIEG VDV+TTDGY LR+ CI FT K  NQI + CYA ++Q+R +RKKM +IM +EA+KCDL+ELVLK IPE +  EI KA   I+P+QNV++RKVK LKKPKFDLTKLME+HGD   ED G  + RE EGEE   A+
Sbjct:   13 KKGGKKKATDPFLKKEWYEIKAPSMFSQRNAGKTLVTRTQGTKIASDALKGRVFDLSLADLNNDEDQTYRKIKLVCEDIQGYNCLTNFHGMDMTRDKLASLIKKWQTLIEGNVDVKTTDGYTLRMFCIAFTTKMPNQIAKMCYANSAQVRLIRKKMVEIMRDEATKCDLKELVLKLIPEYMGTEIEKACAGIFPLQNVFVRKVKVLKKPKFDLTKLMELHGDAGNEDSGAAVPREGEGEEVAAAE 257
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BLAST of mRNA_Ecto-sp8_S_contig1020.328.1 vs. uniprot
Match: I1HW94_BRADI (40S ribosomal protein S3a n=6 Tax=Pooideae TaxID=147368 RepID=I1HW94_BRADI)

HSP 1 Score: 330 bits (847), Expect = 1.380e-111
Identity = 164/243 (67.49%), Postives = 197/243 (81.07%), Query Frame = 1 
Query:   22 GRKGNKKKTVDPMTLKEWYDIKAPSIFQVRNPGKTLVTRTKGTKIASEGLKGRVFEFSLGDLNADEDLGYRKVKLCCEDVQGTSVLTNFHGMDLTRDKLCSLIKKWQTLIEGQVDVRTTDGYLLRISCIGFTKKQDNQIKQTCYAQASQIRAVRKKMCDIMSEEASKCDLRELVLKFIPENISGEILKAVQSIYPMQNVYIRKVKALKKPKFDLTKLMEMHGDNTTEDVGMEMEREDEGEEAV 750
            GRKG+KKK VDP T KEWYDIKAP +F  RN GKTLV+RT+GTKIASEGLK RVFE SL DL  DED  YRK++L  EDVQG +VLTNF GMD T DKL SL+KKWQTLIE  VDV+TTD Y++R+ CIGFTK++ NQ+K+TCYAQ+SQIR +R+KM +IM  +A+ CDL+ELV KFIPE I  EI KA  SI+P+QNVY+RKVK LK PKFDL KLME+HGD   EDVG++++R  EG+EA+
Sbjct:   12 GRKGSKKKIVDPFTKKEWYDIKAPLLFNTRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDEDQAYRKIRLRAEDVQGRNVLTNFWGMDFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMIRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMVEIMINQAASCDLKELVAKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGDYGKEDVGVKLDRPAEGDEAI 254
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BLAST of mRNA_Ecto-sp8_S_contig1020.328.1 vs. uniprot
Match: RS3A_ORYSJ (40S ribosomal protein S3a n=56 Tax=Poaceae TaxID=4479 RepID=RS3A_ORYSJ)

HSP 1 Score: 329 bits (844), Expect = 3.560e-111
Identity = 167/251 (66.53%), Postives = 201/251 (80.08%), Query Frame = 1 
Query:   22 GRKGNKKKTVDPMTLKEWYDIKAPSIFQVRNPGKTLVTRTKGTKIASEGLKGRVFEFSLGDLNADEDLGYRKVKLCCEDVQGTSVLTNFHGMDLTRDKLCSLIKKWQTLIEGQVDVRTTDGYLLRISCIGFTKKQDNQIKQTCYAQASQIRAVRKKMCDIMSEEASKCDLRELVLKFIPENISGEILKAVQSIYPMQNVYIRKVKALKKPKFDLTKLMEMHGDNTTEDVGMEMER--EDE---GEEAVVAD 759
            G+KG+KKKTVDP   K+WYDIKAPS+F VRN GKTLV+RT+GTKIASEGLK RVFE SL DL  DED  YRK++L  EDVQG +VLTNF GM  T DKL SL+KKWQTLIE  VDV+TTDGY+LR+ CIGFTK++ NQ+K+TCYAQASQIR +R+KM +IM+ +AS CDL+ELV KFIPE I  EI KA  SI+P+QNV++RKVK LK PKFDL KLME+HGD   ED+G +++R  EDE   G+E   A+
Sbjct:   12 GKKGSKKKTVDPFAKKDWYDIKAPSVFNVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDEDQAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDGYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQASSCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVFVRKVKILKAPKFDLGKLMEVHGDYAKEDIGTKLDRPAEDEAMAGQEVAAAE 262
[Close]
BLAST of mRNA_Ecto-sp8_S_contig1020.328.1 vs. uniprot
Match: I1H8I6_BRADI (40S ribosomal protein S3a n=4 Tax=Pooideae TaxID=147368 RepID=I1H8I6_BRADI)

HSP 1 Score: 328 bits (841), Expect = 1.090e-110
Identity = 165/243 (67.90%), Postives = 199/243 (81.89%), Query Frame = 1 
Query:   22 GRKGNKKKTVDPMTLKEWYDIKAPSIFQVRNPGKTLVTRTKGTKIASEGLKGRVFEFSLGDLNADEDLGYRKVKLCCEDVQGTSVLTNFHGMDLTRDKLCSLIKKWQTLIEGQVDVRTTDGYLLRISCIGFTKKQDNQIKQTCYAQASQIRAVRKKMCDIMSEEASKCDLRELVLKFIPENISGEILKAVQSIYPMQNVYIRKVKALKKPKFDLTKLMEMHGDNTTEDVGMEMEREDEGEEAV 750
            GRKG+KKK VDP T KEWYDIKAP +F  RN GKTLV+RT+GTKIASEGLK RVFE SL DL ADED  +RK++L  EDVQG +VLTNF GMD T DKL SL++KWQTLIE  VDV+TTD Y+LR+ CIGFTK++ NQ+K+TCYAQ+SQIR +R+KM +IM+ +A+ CDL+ELV KFIPE I  EI KA  SI+P+QNVY+RKVK LK PKFDL KLME+HGD   EDVGM+++R  +G+EAV
Sbjct:   12 GRKGSKKKIVDPFTKKEWYDIKAPLLFSTRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQADEDQAFRKIRLRAEDVQGRNVLTNFWGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDNYMLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMVEIMANQATSCDLKELVQKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGDYK-EDVGMKVDRPADGDEAV 253
[Close]
BLAST of mRNA_Ecto-sp8_S_contig1020.328.1 vs. uniprot
Match: A0A812NHF5_SYMMI (40S ribosomal protein S3a n=2 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812NHF5_SYMMI)

HSP 1 Score: 328 bits (840), Expect = 1.440e-110
Identity = 169/239 (70.71%), Postives = 196/239 (82.01%), Query Frame = 1 
Query:   22 GRKGNKKKTVDPMTLKEWYDIKAPSIFQVRNPGKTLVTRTKGTKIASEGLKGRVFEFSLGDLNA-DEDLGYRKVKLCCEDVQGTSVLTNFHGMDLTRDKLCSLIKKWQTLIEGQVDVRTTDGYLLRISCIGFTKKQDNQ-IKQTCYAQASQIRAVRKKMCDIMSEEASKCDLRELVLKF--IPENISGEILKAVQSIYPMQNVYIRKVKALKKPKFDLTKLMEMHGDNTTEDVGMEMER 726
            GRKG KKKTVDP + KE Y +KAPSIF  RN G+T++T+T GTKIASEGLKGRVFE SL DLN  DE  GYRK+KL CEDV G  VLTNFHGMD+TRDKLCSLI+KWQTLIE  VDVRTTDGY+LR+ CIGFTKKQ NQ  K TCYAQ+ Q+RA+R+KM DIM+EEASKCDL+ELV KF  +PE+I  EI KA QSI+P+QNV IRKVK L+KPKFDL KLME+HGD+  ED G  +++
Sbjct:    8 GRKGGKKKTVDPFSRKETYQVKAPSIFATRNAGRTIITKTIGTKIASEGLKGRVFEVSLADLNGGDESQGYRKIKLVCEDVNGYEVLTNFHGMDITRDKLCSLIRKWQTLIEAFVDVRTTDGYVLRMFCIGFTKKQGNQQAKSTCYAQSGQVRAIRRKMFDIMTEEASKCDLKELVQKFCSMPESIGHEIEKACQSIFPLQNVCIRKVKVLRKPKFDLVKLMELHGDSG-EDTGAALDK 245
[Close]
BLAST of mRNA_Ecto-sp8_S_contig1020.328.1 vs. uniprot
Match: A0A7S4E908_9STRA (40S ribosomal protein S3a n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E908_9STRA)

HSP 1 Score: 328 bits (841), Expect = 2.940e-110
Identity = 164/245 (66.94%), Postives = 192/245 (78.37%), Query Frame = 1 
Query:   25 RKGNKKKTVDPMTLKEWYDIKAPSIFQVRNPGKTLVTRTKGTKIASEGLKGRVFEFSLGDLNADEDLGYRKVKLCCEDVQGTSVLTNFHGMDLTRDKLCSLIKKWQTLIEGQVDVRTTDGYLLRISCIGFTKKQDNQIKQTCYAQASQIRAVRKKMCDIMSEEASKCDLRELVLKFIPENISGEILKAVQSIYPMQNVYIRKVKALKKPKFDLTKLMEMHGDNTTEDVGMEMEREDEGEEAVVAD 759
            +KG KKK VDP   KEWY+IKAPS+F VRN GKTLVTRT+GTKIAS+ LKGRVFE SLGDLN DED  YRK+KL CEDVQG + LTNFHGM +TRDKL SLIKKWQTL+EG VDV+TTDGY LR+  IGFT K  NQ+ + CYA ++Q+R +RKKM D+M EEASKCDL++LVLK IPE + GEI KA   I+PMQNV++RKVK LKKPKFDL KLME+H     ED G + E +   EE V A+
Sbjct:   39 KKGGKKKAVDPFLKKEWYEIKAPSMFSVRNCGKTLVTRTQGTKIASDALKGRVFEISLGDLNNDEDQTYRKIKLICEDVQGYNCLTNFHGMGMTRDKLASLIKKWQTLVEGNVDVKTTDGYTLRMFAIGFTTKMPNQVSKMCYANSAQVRQIRKKMVDVMREEASKCDLKDLVLKLIPEYMGGEIEKACAGIFPMQNVFVRKVKVLKKPKFDLVKLMELHSGEGAEDSGDKAEGD--AEEVVAAE 281
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig1020.328.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKH7_ECTSI2.510e-17999.6140S ribosomal protein S3a n=2 Tax=Ectocarpus TaxID... [more]
A0A835Z1K4_9STRA1.080e-11972.8440S ribosomal protein S3a n=1 Tax=Tribonema minus ... [more]
A0A7S2Y1J4_9STRA7.120e-11973.1140S ribosomal protein S3a n=1 Tax=Fibrocapsa japon... [more]
C5XD92_SORBI1.930e-11368.3140S ribosomal protein S3a n=6 Tax=Andropogoneae Ta... [more]
F0YJC6_AURAN9.630e-11366.9440S ribosomal protein S3a n=1 Tax=Aureococcus anop... [more]
I1HW94_BRADI1.380e-11167.4940S ribosomal protein S3a n=6 Tax=Pooideae TaxID=1... [more]
RS3A_ORYSJ3.560e-11166.5340S ribosomal protein S3a n=56 Tax=Poaceae TaxID=4... [more]
I1H8I6_BRADI1.090e-11067.9040S ribosomal protein S3a n=4 Tax=Pooideae TaxID=1... [more]
A0A812NHF5_SYMMI1.440e-11070.7140S ribosomal protein S3a n=2 Tax=Symbiodinium mic... [more]
A0A7S4E908_9STRA2.940e-11066.9440S ribosomal protein S3a n=3 Tax=Pelagomonas calc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig1020contigEcto-sp8_S_contig1020:1865..6642 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score503.1
Seed ortholog evalue7.9e-140
Seed eggNOG ortholog2880.D7FKH7
Preferred nameRS3A
Model size765
KEGG rclassRC00434
KEGG koko:K01807,ko:K02984
KEGG ReactionR01056
KEGG Pathwayko00030,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko03010,map00030,map00710,map01100,map01110,map01120,map01130,map01200,map01230,map03010
KEGG ModuleM00004,M00007,M00165,M00167,M00177,M00179,M00580
Hectar predicted targeting categoryother localisation
GOsGO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0005840,GO:0005844,GO:0005886,GO:0005911,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009506,GO:0009507,GO:0009536,GO:0009987,GO:0010467,GO:0015935,GO:0016020,GO:0019538,GO:0022626,GO:0022627,GO:0030054,GO:0030312,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0034645,GO:0042788,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0055044,GO:0070013,GO:0071704,GO:0071944,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Exons7
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG1890@1,KOG1628@2759
Ec32 ortholog descriptionRibosomal protein S3Ae
Ec32 orthologEc-12_002020.1
EC5.3.1.6
Cds size765
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko03011
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig1020.328.1prot_Ecto-sp8_S_contig1020.328.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig1020 1865..6642 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143118.1138422-CDS-Ecto-sp8_S_contig1020:1864..19681681143118.1138422-CDS-Ecto-sp8_S_contig1020:1864..1968Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1020 1865..1968 -
1681143118.1234107-CDS-Ecto-sp8_S_contig1020:2561..26711681143118.1234107-CDS-Ecto-sp8_S_contig1020:2561..2671Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1020 2562..2671 -
1681143118.1316156-CDS-Ecto-sp8_S_contig1020:3250..34021681143118.1316156-CDS-Ecto-sp8_S_contig1020:3250..3402Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1020 3251..3402 -
1681143118.1407614-CDS-Ecto-sp8_S_contig1020:4042..42161681143118.1407614-CDS-Ecto-sp8_S_contig1020:4042..4216Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1020 4043..4216 -
1681143118.1528375-CDS-Ecto-sp8_S_contig1020:5041..51151681143118.1528375-CDS-Ecto-sp8_S_contig1020:5041..5115Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1020 5042..5115 -
1681143118.1716807-CDS-Ecto-sp8_S_contig1020:5692..57961681143118.1716807-CDS-Ecto-sp8_S_contig1020:5692..5796Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1020 5693..5796 -
1681143118.1790614-CDS-Ecto-sp8_S_contig1020:6595..66421681143118.1790614-CDS-Ecto-sp8_S_contig1020:6595..6642Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1020 6596..6642 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig1020.328.1

>prot_Ecto-sp8_S_contig1020.328.1 ID=prot_Ecto-sp8_S_contig1020.328.1|Name=mRNA_Ecto-sp8_S_contig1020.328.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=255bp
GKTNKKGGRKGNKKKTVDPMTLKEWYDIKAPSIFQVRNPGKTLVTRTKGT
KIASEGLKGRVFEFSLGDLNADEDLGYRKVKLCCEDVQGTSVLTNFHGMD
LTRDKLCSLIKKWQTLIEGQVDVRTTDGYLLRISCIGFTKKQDNQIKQTC
YAQASQIRAVRKKMCDIMSEEASKCDLRELVLKFIPENISGEILKAVQSI
YPMQNVYIRKVKALKKPKFDLTKLMEMHGDNTTEDVGMEMEREDEGEEAV
VADE*
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mRNA from alignment at Ecto-sp8_S_contig1020:1865..6642-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig1020.328.1 ID=mRNA_Ecto-sp8_S_contig1020.328.1|Name=mRNA_Ecto-sp8_S_contig1020.328.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=4778bp|location=Sequence derived from alignment at Ecto-sp8_S_contig1020:1865..6642- (Ectocarpus species8 EcLAC_412)
GGCAAGACGAACAAGAAGGGCGGCCGAAAGGGCAACAAGAAGAAGACGTG
AGTTTGTTGAGTTGGGAGTGTTGGAGAAAGTCGTGTGGGTGCGTGATGAA
AGGCTTTTGGTGTCGTCGGCAATCTTTTATCGAATTGGTGGGGACGCCAG
ACGTACCCATCCTGGTGTCGCAGGTGCTGCTTAGAAGTATGGGTTGCATG
CTTTGCTTTTGAATATCGACTGCTGCTGTGCGTTATGTCGTCCTACTCGA
GTAGACACGAAACGGTGGCGAAAGTGGCCACTAAATTGGAACCAAGTCAT
TGCTGGTTGCACGCCAGTCGAGCATACGTCGCTGCTGCGGCTGTAGGGCA
GCAACTACGTTTTGCTACCCTATTGACATTTTCGGTGCTCCTTGTCTCAA
CTCTGCGCCGTGTGCGTGTTGCCGTGTTACCTGGTGGGTACCGTAGTACT
GCTGTACCCAAGAAATGGCCCGTTTGAAGAACGCGCAAACCTTGTTTCCT
TCAGTTGATTGAGAGAAGTCAGGTGCCCACCAACATTAGATGACCCACTA
CTCACGCGGCCTCCACACACGTTGGCGTCAAGACTTGACAGGATTGCCCG
GGGCTGGCAGAGGATGACCGTAGAAAACTGAAGGCAATCTCTACTTCGTT
TTTTTCGGATACACACGCTTGGAACACCGATATTTTATCTCTTATTTATA
GAAGGCCGGCCTCCTCGGAATGCAAAACTGGTCACCCGCGTTTCCGATAA
TTGACCAAGCTTACCGGTAGCAGTTTTCCAGCATCCGGCACAGAGTTGTC
ACCCTCGCAAGCATTTCGCGTTTCTTTTGTGGCTTGCCGACGGCAGCGTG
GACCCCATGACCCTCAAGGAGTGGTACGACATCAAGGCGCCCTCCATCTT
CCAAGTGCGCAACCCGGGCAAGACTCTTGTCACCCGTACCAAGGGAACGA
GTGAGTTGACTTGTCTCTTTTCGTAATGTTGCATTCCGCTCCTAAGGAAG
AAGAGGATATAGGATGGGAGAAAGATAACAAACGTCTGCCGTCATCCTCG
TGTGCTCGTCATTTTTCTTTTTCTTTTTTCTTTGCGGGCGTCATGCGCGT
TGCGGTCTCCGCCAGCCTGGCGTCCACCTTACAACCGAGCGAATCTAGCT
CACCGGGTTGGTTTTGCTTGTCTCTGCGAATGAATACAGTAGCGCAAGCA
CAACCGTTGTGAGCCGTATGCATAGCTCGGAACGTGTAGTTTCCTGCCCC
CCTTGTGCCACGCAGTAGTTTGCGCCCTGTACTCACGAGAACGCACGCTC
TTTGGCCTCCAGTCCGTGACTAAATAGGGTTGTGTAACACCACCGCAATC
GCACCGCAGTCGTATGTGTCGAACACCTACGCGACAGGTTGTTATGTTAG
TCCCTGGCGTTTTCTGTTGTCATCCTCATCCCCCCCGCCTGTTCTGAAAA
ATTATCCTTCACGTTTGGATGCGTCTGCTGTTGTTGCCGCTGTTGCCGCC
GCCACCGCCGGTCGCTGGTCGGAGCAGAGATCGCTTCGGAGGGGCTTAAG
GGGCGTGTGTTCGAGTTCTCTCTCGGAGACCTTAACGCCGACGAGGACCT
GGTGAGGAGCGGTTGTTTGGTGCAAGGACCTTCCGAAGAGCTTATGTCCT
CTCGGAGGCGAAAACCTCAAGATGATGTCTCGTGTCGAATCCCCCACCCC
TCCGGGGTGCTTACTGTAGTAGATTGACCCTCGTGGTCACGATTTGTAAT
TGCACTACGGTTGCTGTTGTCTCCTCAAGTGCCGTTTGCTTTCCTCTGTT
GGATACCGAAGCGAGCGCAGAACCGTCGTCGGTACATGAGGAGTTGGACC
CCTGAATGTGGCGTGTTTTTTCTACAACGCCCTTGGAAACAGCAGTGTTG
AGTTTGGACTTGAACGGCCGCTTCGGCGCTTCGCACTGTATTCGTACAAA
TTCGATTGGTAGCCTAAGCGTCCTCTGGGACTCTAGAATCAGAGGCGTGG
GCAAAGCCCTCAGTTGTCTCGCGAGCTCGGAACATTCGCGGAATACTCTC
GGGGGAGAAAACCGTGAACAGGCAGACGTTGACGAGGGCAAGCAGTAGTG
AGCTAACTAACAGGTACAAGAGTTATTCCAGGCCTACAAGGCCGCCCTTA
CGGGAGTAGTTATACTGTTCAGCAGAGTCTTGCCCGTCCGTTGCGGCAGA
CGACATTTATTGGGGAAAGGTCGACTGTTCGCACACAGCGACACTAGTAT
GGTGGTGCTTGGTTTTTTCAGAATATGCACGAGCTCCTGCGGTTGACCTT
CGAGACCGACCCAGTAGTGTAGAGGTGACCCAAGCCTCGCTTGGTGCCTG
TTTTTTACTGCGTCCTGAGCTCGCCCAACCTGCGGCATGACTGATTTCTT
GTTTCTTGCCCCTCTCTCTTTGTCAGGGGTACCGGAAGGTGAAGCTGTGC
TGCGAGGATGTCCAGGGCACCTCGGTCCTCACCAACTTCCACGGGATGGA
CCTCACCCGCGACAAGCTCTGCTCGCTCATCAAGAAGTGGCAGACGCTCA
TCGAGGGGCAGGTTGACGTCCGCACCACTGATGGTTACCTCCTCCGCATC
GTGAGTGTACAAGTACAAACGATAGCCTACGGACTCGTCTTTTTTGTGCG
TGAGGAAGGAAGCAGGAAGGGCTCTTTGTAAAGCAGCTGGCTGGCACGGG
GATGAGAATCCGGGCCGCTTCCATTATGCTTTTGTTGTCCAACCTGTGAT
GGTACAAGATCACTGTGCTCCTTCTGGTGGTTCAGCTACATGTAGGGGTC
CCAGTTTGGCGGCGGTAAACATGGGGGACGGCAATGTTGTCACTAGGCGC
GCTTTTTATTTGTCAACAGCGGCCCTGTTCCCGCCGTTTTTGCTGTGCCG
ACACCTAACTGTCGGGCGGGTGCACACTCGTTGTTTCGCCCTGATAACAT
CTTGAAGAAACGTATATACTTGCAAAGCTGTCACCCTCATGCACGGCAGT
CGATAGCGATTCTCGTTGCACAACGACTCTTGGCCAGCGTGACCTTTCCT
TTTGTCCCACAAATCGAAGGAGACGAGCTTGGCTCTCATGTGTATGACCG
CAAGCCCGCTCCCCTCTTCTCTCTGGATGACGTCACTATATGTGTACCAC
GTTCGCTTTCTGTCCCCTCGTTCGTCAACGCGAATACATTCGGCGGTGCC
CCCCTTTCCGTTGTTCGTCCTGCGTCGTGTTTTGACGCAGTCTTGCATCG
GCTTCACCAAGAAGCAGGACAACCAGATCAAGCAGACTTGCTACGCGCAG
GCGTCGCAGATCCGAGCGGTGCGCAAGAAGATGTGCGACATCATGTCGGA
GGAGGCCTCCAAGTGCGACCTCAGGGAGCTCGTGCTCAAGTTGTGAGTGC
ATCTCCGCGCTACGAACCATGTTCATCAACACCTTGAAATAGCACATACG
TAGTACCCCGGGCGGCGGGTGTTTTTTCGTGCCGCTCGCGTGGGTTTGTG
TAGATCGTGTCCCGCGTTATTGGCGAGGCAGCCGTAGAGTTTCTTGCAAT
GCCTCTCATTTTTGAATGTCACTTGGGGTTCATCAGCCGGTGATGAAAAA
CAACGTGTTGCTCAACGGATGGATGCATTGCCATCTAGTATAGGGGCATT
GGCACACAAGAGGAGGTCAAAGCGCCAGTAGGAGGAAATCTTGGCGCATG
GCTTTCTTCTTGAACTGCTGGGTGCATGACACGAAACAACTTGAGTATCT
CAGTGAAGCAGCAAGCGATCTTAACCAACACGGGACGCCGCGACCAGTGC
GTATTGCTTCCGGCTTCCCTACCCGCCCTTTGTTCGGGCAAGGTCTTGAT
GGGGCTTCTCCTTGTCGTACCTTTCCGCGATATGACATGAAATCACGTGT
TGTTATTCCCCCGCCTCACTGCTGCCCCTTGTTGACCATGGCCGTGTGTG
CGATGTCATCGTGTATTGCAGCATCCCCGAGAACATCTCCGGAGAGATCC
TCAAGGCTGTGCAGAGCATCTACCCGATGCAGAACGTCTACATCCGCAAG
GTCAAGGCGCTCAAGAAGCCCAAGTTCGACCGTGAGTATTGTGCCCGTTT
TGTTGCGTGACCCGGGATGGTGTCGAGTCCAGGAGACACTCAATTTCAGC
GCAGAGTATGCCCCGGTGATGTGCTCAAGGAGTTTTTGATTTTGTTGCAA
CCGGCAGTAATGGTGTTGGAAGATGTACCTGTATGCTGTACGTGTACACA
ACATCCTTTTTTTTGTCGGATAGTTTTGGCTTCATCATTATCGTGTACCC
AAAACTAAACACCCAACGCCGATTCAAAACACACTAAATACAATATTGTT
ACTCGAGCATTTGATGGGAAATATTTTTTTGCGTGGGTTTTTCATGTGTG
CGAAGTATTCTCGATTGGGTTTTGCTCCCTCTGCTTCGGCGTGGATTTGA
ATATCTTGCTTCGGAGGCCGGCCTGCGACGACAGAAATCAGCGGCAAGGA
TGGTGCCATCTCCAGTCGCCTCTCAAAATCGTCACTCTCGAGTTACTTTG
TTTTTTGTTTCACAACCAACCCCGTAAAACTCCTAGATCCACCGCTGTGT
AGCACAGGAGGAGTGTTTCGGCTGCTTTCATGTGACAACCCCGCCGCCTG
CCCCCCTTAACCTTGTCGCTGCAGTCACCAAGCTGATGGAGATGCACGGT
GACAACACCACCGAGGACGTCGGCATGGAGATGGAGAGGGAGGACGAGGG
CGAGGAAGCTGTCGTTGCGGACGAGTAA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig1020:1865..6642-

>mRNA_Ecto-sp8_S_contig1020.328.1 ID=mRNA_Ecto-sp8_S_contig1020.328.1|Name=mRNA_Ecto-sp8_S_contig1020.328.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=765bp|location=Sequence derived from alignment at Ecto-sp8_S_contig1020:1865..6642- (Ectocarpus species8 EcLAC_412)
GGCAAGACGAACAAGAAGGGCGGCCGAAAGGGCAACAAGAAGAAGACCGT
GGACCCCATGACCCTCAAGGAGTGGTACGACATCAAGGCGCCCTCCATCT
TCCAAGTGCGCAACCCGGGCAAGACTCTTGTCACCCGTACCAAGGGAACG
AAGATCGCTTCGGAGGGGCTTAAGGGGCGTGTGTTCGAGTTCTCTCTCGG
AGACCTTAACGCCGACGAGGACCTGGGGTACCGGAAGGTGAAGCTGTGCT
GCGAGGATGTCCAGGGCACCTCGGTCCTCACCAACTTCCACGGGATGGAC
CTCACCCGCGACAAGCTCTGCTCGCTCATCAAGAAGTGGCAGACGCTCAT
CGAGGGGCAGGTTGACGTCCGCACCACTGATGGTTACCTCCTCCGCATCT
CTTGCATCGGCTTCACCAAGAAGCAGGACAACCAGATCAAGCAGACTTGC
TACGCGCAGGCGTCGCAGATCCGAGCGGTGCGCAAGAAGATGTGCGACAT
CATGTCGGAGGAGGCCTCCAAGTGCGACCTCAGGGAGCTCGTGCTCAAGT
TCATCCCCGAGAACATCTCCGGAGAGATCCTCAAGGCTGTGCAGAGCATC
TACCCGATGCAGAACGTCTACATCCGCAAGGTCAAGGCGCTCAAGAAGCC
CAAGTTCGACCTCACCAAGCTGATGGAGATGCACGGTGACAACACCACCG
AGGACGTCGGCATGGAGATGGAGAGGGAGGACGAGGGCGAGGAAGCTGTC
GTTGCGGACGAGTAA
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