mRNA_Ecto-sp8_S_contig10199.326.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10199.326.1
Unique NamemRNA_Ecto-sp8_S_contig10199.326.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10199.326.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10199contigEcto-sp8_S_contig10199:2991..3546 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size556
Hectar predicted targeting categoryother localisation
Exons1
Cds size333
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143118.0435812-UTR-Ecto-sp8_S_contig10199:2990..32131681143118.0435812-UTR-Ecto-sp8_S_contig10199:2990..3213Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10199 2991..3213 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143118.0530336-CDS-Ecto-sp8_S_contig10199:3213..35461681143118.0530336-CDS-Ecto-sp8_S_contig10199:3213..3546Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10199 3214..3546 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10199.326.1prot_Ecto-sp8_S_contig10199.326.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10199 3214..3546 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10199.326.1

>prot_Ecto-sp8_S_contig10199.326.1 ID=prot_Ecto-sp8_S_contig10199.326.1|Name=mRNA_Ecto-sp8_S_contig10199.326.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=111bp
MCSHLSSTTNTTDARRATICTDSKSKCVIARVLPCHHGPMREQYYPSSLL
SPIIMTLTLPLLSSPLLSVKKHVNTAIQANDSERTQQKQKQSVFLSKTEA
TMEHVKRASTP
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mRNA from alignment at Ecto-sp8_S_contig10199:2991..3546+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10199.326.1 ID=mRNA_Ecto-sp8_S_contig10199.326.1|Name=mRNA_Ecto-sp8_S_contig10199.326.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=556bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10199:2991..3546+ (Ectocarpus species8 EcLAC_412)
CAATAAATCACGTGCTACGTACAACATGTAGCACTACTATTCACCAAAAA
CACGGACACATCATCATCCCACGGCAACCCCTCAAAAAAGTCCGTCAAGA
AACGAAAACAACTGTAACACCCAAAATGAGTCACCCAAGCAAGATCGATC
ACATCAAACGATCACATCAAACTTACACAACAAACAGTAGTTAAACCGAC
AGATCAGTCAGTTGTTCAATTCAATGTGTTCGCATCTATCTTCGACTACA
AATACAACAGACGCAAGAAGAGCCACAATATGTACCGATTCAAAGAGTAA
ATGCGTGATAGCAAGAGTTCTGCCATGCCATCATGGGCCAATGCGGGAAC
AATATTACCCTTCTTCATTGTTGTCTCCTATCATCATGACACTCACTCTC
CCCCTTCTGTCCTCTCCTCTCCTATCAGTCAAGAAGCATGTAAACACTGC
CATACAAGCGAACGACAGTGAACGAACACAACAGAAACAAAAACAAAGCG
TCTTCCTATCGAAAACAGAAGCAACCATGGAGCACGTGAAACGTGCCAGC
ACCCCT
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10199:2991..3546+

>mRNA_Ecto-sp8_S_contig10199.326.1 ID=mRNA_Ecto-sp8_S_contig10199.326.1|Name=mRNA_Ecto-sp8_S_contig10199.326.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=333bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10199:2991..3546+ (Ectocarpus species8 EcLAC_412)
ATGTGTTCGCATCTATCTTCGACTACAAATACAACAGACGCAAGAAGAGC
CACAATATGTACCGATTCAAAGAGTAAATGCGTGATAGCAAGAGTTCTGC
CATGCCATCATGGGCCAATGCGGGAACAATATTACCCTTCTTCATTGTTG
TCTCCTATCATCATGACACTCACTCTCCCCCTTCTGTCCTCTCCTCTCCT
ATCAGTCAAGAAGCATGTAAACACTGCCATACAAGCGAACGACAGTGAAC
GAACACAACAGAAACAAAAACAAAGCGTCTTCCTATCGAAAACAGAAGCA
ACCATGGAGCACGTGAAACGTGCCAGCACCCCT
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