mRNA_Ecto-sp8_S_contig10197.319.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10197.319.1
Unique NamemRNA_Ecto-sp8_S_contig10197.319.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig10197.319.1 vs. uniprot
Match: D7FQ80_ECTSI (P4Hc domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ80_ECTSI)

HSP 1 Score: 454 bits (1167), Expect = 2.210e-158
Identity = 260/346 (75.14%), Postives = 262/346 (75.72%), Query Frame = 3
Query:   72 MGKKAKRTTDGTEGPRRPETLRHTRVYGPLVLPDGKGENDAVDLELTSKRVYQDTILSVDGLLSPRECAAWIRYGEGQGFERSFHRQTSEMAHRDNGRITLHSADVAAAVFARVGKFVPANMGGRRPLACNSNIRIYRYAVGQRFGKHIDESVDDENGLTSQWTVLIYLNGXXXXXXXXXXXXXSG-SKKKGRSDXXXAFAGAGEEGAPLRGGETVFYK-----------------------------------------------------------------------------GNYGDKVAASFSPRQGACLVHGHGQQCLLHEGAAVTSGVKYLLRTDVMYG 875
            MGKK KRTTDGTE PRR ETLRHTRVYGPLVLPDGKGENDAVDLELTSKR+YQDTILS+DGLLSPRECAAWIRYGEGQGFERSFHRQTSEMAHRDNGRITLHSADVAAAVFARVGKFVPANMGGRRPLACNSNIRIYRYAVGQRFGKHIDESVDDENGLTSQWTVLIYLNGXXXXXXXXXXXXX   SKKKGRSDXXX FAGAGEEGAPLRGGETVFYK                                                                             GNYGDKVAASFSPRQGACLVHGHGQQCLLHEGAAVTSGVKYLLRTDVMYG
Sbjct:    1 MGKKGKRTTDGTEDPRRSETLRHTRVYGPLVLPDGKGENDAVDLELTSKRIYQDTILSIDGLLSPRECAAWIRYGEGQGFERSFHRQTSEMAHRDNGRITLHSADVAAAVFARVGKFVPANMGGRRPLACNSNIRIYRYAVGQRFGKHIDESVDDENGLTSQWTVLIYLNGXXXXXXXXXXXXXXXXSKKKGRSDXXXTFAGAGEEGAPLRGGETVFYKAAADALCCVPLFPIGTRGFKQILEESVSVHSPTLPLTQVPCSLFPTCVLLPLNPSPLSAVLRALTFGSLSSCLLPFKGNYGDKVAASFSPRQGACLVHGHGQQCLLHEGAAVTSGVKYLLRTDVMYG 346          
BLAST of mRNA_Ecto-sp8_S_contig10197.319.1 vs. uniprot
Match: A0A6H5KGN2_9PHAE (P4Hc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGN2_9PHAE)

HSP 1 Score: 385 bits (990), Expect = 3.300e-133
Identity = 207/211 (98.10%), Postives = 208/211 (98.58%), Query Frame = 3
Query:  243 SVDGLLSPRECAAWIRYGEGQGFERSFHRQTSEMAHRDNGRITLHSADVAAAVFARVGKFVPANMGGRRPLACNSNIRIYRYAVGQRFGKHIDESVDDENGLTSQWTVLIYLNGXXXXXXXXXXXXXSGSKKKGRSDXXXAFAGAGEEGAPLRGGETVFYKGNYGDKVAASFSPRQGACLVHGHGQQCLLHEGAAVTSGVKYLLRTDVMYG 875
            S+DGLLSPRECAAWIRYGEGQGFERSFHRQTSEMAHRDNGRITLHSADVAAAVFARVGKFVPANMGGRRPLACNSNIRIYRYAVGQRFGKHIDESVDDENGLTSQWTVLIYLNGXXXXXXXXXXXXX   KKKGRSDXXXAFAGAGEEGAPLRGGETVFYKGNYGDKVAASFSPRQGACLVHGHGQQCLLHEGAAVTSGVKYLLRTDVMYG
Sbjct:   22 SIDGLLSPRECAAWIRYGEGQGFERSFHRQTSEMAHRDNGRITLHSADVAAAVFARVGKFVPANMGGRRPLACNSNIRIYRYAVGQRFGKHIDESVDDENGLTSQWTVLIYLNGXXXXXXXXXXXXXXXXKKKGRSDXXXAFAGAGEEGAPLRGGETVFYKGNYGDKVAASFSPRQGACLVHGHGQQCLLHEGAAVTSGVKYLLRTDVMYG 232          
BLAST of mRNA_Ecto-sp8_S_contig10197.319.1 vs. uniprot
Match: A0A836CHZ3_9STRA (Fe2OG dioxygenase domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHZ3_9STRA)

HSP 1 Score: 244 bits (624), Expect = 3.620e-78
Identity = 127/219 (57.99%), Postives = 154/219 (70.32%), Query Frame = 3
Query:  222 VYQDTILSVDGLLSPRECAAWIRYGEGQGFERSFHRQTSEMAHRDNGRITLHSADVAAAVFARVGKFVPANMG-GRRPLACNSNIRIYRYAVGQRFGKHIDESV-DDENGLTSQWTVLIYLNGXXXXXXXXXXXXXSGSKKKGRSDXXXAFAGAGEEGAPLRGGETVFYKGNYGDKVAASFSPRQGACLVHGHGQQCLLHEGAAVTSGVKYLLRTDVMY 872
            VYQD I  +DG L+P EC AWI +GE  GFE +FH  T E+AHRDNGR+ +HS D+AAA++ R+  FVPA +  GR+   CN+NIR+YRY VGQRFGKHIDESV D   G TS++T+L+YLNG             +GS  +G            EEG PL GGET+FYKG+YG K+AAS +P  G+CLVHGHG +CLLHEGA VTSGVKYLLRTDVMY
Sbjct:    1 VYQDLIFRIDGFLTPAECGAWIDWGEETGFENTFHTATREIAHRDNGRLQVHSPDIAAAIWQRIQPFVPAELSRGRKAAGCNANIRLYRYCVGQRFGKHIDESVLDPTTGATSEYTLLLYLNG-------------AGSPVRG------------EEG-PLAGGETLFYKGSYGGKLAASVTPIAGSCLVHGHGARCLLHEGALVTSGVKYLLRTDVMY 193          
BLAST of mRNA_Ecto-sp8_S_contig10197.319.1 vs. uniprot
Match: A0A7S2UX31_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UX31_9STRA)

HSP 1 Score: 226 bits (577), Expect = 1.710e-69
Identity = 117/241 (48.55%), Postives = 150/241 (62.24%), Query Frame = 3
Query:  177 KGENDAVDLELTSKRVYQDTILSVDGLLSPRECAAWIRYGEGQGFERSFHRQTSEMAHRDNGRITLHSADVAAAVFARVGKFVPANMGGRRPLACNSNIRIYRYAVGQRFGKHIDESVDDENGLTSQWTVLIYLNGXXXXXXXXXXXXXSGSKKKGRSDXXXAFAGAG------EEGA--PLRGGETVFYKGNYGDKVAASFSPRQGACLVHGHGQQCLLHEGAAVTSGVKYLLRTDVMYG 875
            K     V L L ++ +Y+D I  +    +P+EC AWIR+GE  GFE  FH  T E AHRDNGR+   S  VA  ++ R+  FVP +MGG+    C++NIR+Y+Y  GQRFGKHID S  D++G  S +TVL+YL               SG + +GR       A  G      EE    PL+GG TVFY+G+YGDKVAAS +P QG+CL+HGHG +CL+HEGA V  GVKY+LRTDVMYG
Sbjct:   80 KNNQKMVSLSLRTEGIYRDLIFGIPNFFTPQECRAWIRFGENNGFELQFHNATQEYAHRDNGRLQWESEAVAGVLWERLRAFVPTHMGGKEASGCSNNIRLYKYVPGQRFGKHIDGSNVDQHGRQSYYTVLVYL---------------SGGEDQGRPSPAEEEAKGGAPLDGLEESLQEPLQGGHTVFYRGSYGDKVAASVAPLQGSCLLHGHGDRCLVHEGAEVKRGVKYVLRTDVMYG 305          
BLAST of mRNA_Ecto-sp8_S_contig10197.319.1 vs. uniprot
Match: A0A0L0G5Z2_9EUKA (Fe2OG dioxygenase domain-containing protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0G5Z2_9EUKA)

HSP 1 Score: 218 bits (556), Expect = 5.040e-67
Identity = 115/254 (45.28%), Postives = 156/254 (61.42%), Query Frame = 3
Query:  123 PETLRHTRVYG---PLVLPDGKGENDAVDLELTSKRVYQDTILSVDGLLSPRECAAWIRYGEGQGFERSFHRQTSEMAHRDNGRITLHSADVAAAVFARVGKFVPANMGGRRPLACNSNIRIYRYAVGQRFGKHIDESVDDENGLTSQWTVLIYLNGXXXXXXXXXXXXXSGSKKKGRSDXXXAFAGAGEEGA-PLRGGETVFYKGNYGDKVAASFSPRQGACLVHGHGQQCLLHEGAAVTSGVKYLLRTDVMY 872
            P+TL+ T V     P ++P+ +G +  V L +  + +Y+DTI ++   LS  ECAAWI +GE +GFE SF +Q  E AHRDNGRI++ S  +A A F R+   +P   G R+  +CN+NIR+Y+Y  GQRFG+H+DESV D NG  S +TVL+YLNG                 +   S+   +  GA  E    L GGET FY+ ++G  +A +  P++G  L+HGHG QCL HEGA V  GVKYLLRTDVMY
Sbjct:   16 PQTLKQTTVVFVKCPPLIPEPRGYSKPVQLNMDKEYLYKDTIYTLTNFLSDSECAAWIEFGEREGFEASFQKQNRECAHRDNGRISIESESIAQAFFLRLNPSLPEKYGTRQLNSCNTNIRLYKYGPGQRFGRHVDESVVDSNGRKSVYTVLVYLNGH---------------NEDNTSETPRSGDGADLEAINTLVGGETKFYRRHHGSAIACAVRPKKGQALLHGHGAQCLTHEGAEVKEGVKYLLRTDVMY 254          
BLAST of mRNA_Ecto-sp8_S_contig10197.319.1 vs. uniprot
Match: A0A7S2ZAS2_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZAS2_9RHOD)

HSP 1 Score: 209 bits (533), Expect = 1.670e-63
Identity = 110/235 (46.81%), Postives = 140/235 (59.57%), Query Frame = 3
Query:  168 PDGKGENDAVDLELTSKRVYQDTILSVDGLLSPRECAAWIRYGEGQGFERSFHRQTSEMAHRDNGRITLHSADVAAAVFARVGKFVPANMGGRRPLACNSNIRIYRYAVGQRFGKHIDESVDDENGLTSQWTVLIYLNGXXXXXXXXXXXXXSGSKKKGRSDXXXAFAGAGEEGAPLRGGETVFYKGNYGDKVAASFSPRQGACLVHGHGQQCLLHEGAAVTSGVKYLLRTDVMY 872
            P G      V++ +  ++ YQD I  V+   + REC AWI YGE  G   +FH  ++++AHRDNGRI  HS ++AA +F RV   +P       P  C+SNIR+YRY  GQRFGKH+DES D ENG  S +T+LIYLN                                  EG  LRGGETVFYKGNYGDK+A S++PR G+ L+HGHG +C++HEG AV  G KY+LRTDVMY
Sbjct:   55 PKGYYGEKMVNVRMKRRQGYQDLIHVVEDFFTERECTAWIEYGERYGSTEAFHLASADLAHRDNGRIQFHSDEIAAEIFNRVKVMLPETFEKLVPAGCSSNIRLYRYIEGQRFGKHVDESHDGENGERSVFTLLIYLN---------------------------------HEG--LRGGETVFYKGNYGDKLALSYAPRAGSLLLHGHGSRCMVHEGKAVIEGQKYVLRTDVMY 254          
BLAST of mRNA_Ecto-sp8_S_contig10197.319.1 vs. uniprot
Match: A0A7S2Z9G1_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2Z9G1_9RHOD)

HSP 1 Score: 178 bits (452), Expect = 1.320e-52
Identity = 95/196 (48.47%), Postives = 120/196 (61.22%), Query Frame = 3
Query:  285 IRYGEGQGFERSFHRQTSEMAHRDNGRITLHSADVAAAVFARVGKFVPANMGGRRPLACNSNIRIYRYAVGQRFGKHIDESVDDENGLTSQWTVLIYLNGXXXXXXXXXXXXXSGSKKKGRSDXXXAFAGAGEEGAPLRGGETVFYKGNYGDKVAASFSPRQGACLVHGHGQQCLLHEGAAVTSGVKYLLRTDVMY 872
            +RYG  +    +FH  ++++AHRDNGRI  HS ++AA +F RV   +P       P  C+SNIR+YRY  GQRFGKH+DES D ENG  S +T+LIYLN                                  EG  LRGGETVFYKGNYGDK+A S++PR G+ L+HGHG +C++HEG AV  G KY+LRTDVMY
Sbjct:    2 LRYGSTE----AFHLASADLAHRDNGRIQFHSDEIAAEIFNRVKVMLPETFEKLVPAGCSSNIRLYRYIEGQRFGKHVDESHDGENGERSVFTLLIYLN---------------------------------HEG--LRGGETVFYKGNYGDKLALSYAPRAGSLLLHGHGSRCMVHEGKAVIEGQKYVLRTDVMY 158          
BLAST of mRNA_Ecto-sp8_S_contig10197.319.1 vs. uniprot
Match: A0A2R5GIH8_9STRA (Tetraacyldisaccharide 4'-kinase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GIH8_9STRA)

HSP 1 Score: 179 bits (453), Expect = 1.270e-48
Identity = 101/226 (44.69%), Postives = 131/226 (57.96%), Query Frame = 3
Query:  195 VDLELTSKRVYQDTILSVDGLLSPRECAAWIRYGEGQGFERSFHRQTSEMAHRDNGRITLHSADVAAAVFARVGKFVPANMGGRRPLACNSNIRIYRYAVGQRFGKHIDES-VDDENGLTSQWTVLIYLNGXXXXXXXXXXXXXSGSKKKGRSDXXXAFAGAGEEGAPLRGGETVFYKGNYGDKVAASFSPRQGACLVHGHGQQCLLHEGAAVTSGVKYLLRTDVM 869
            V L+L    V +D I +V   LSP ECAAWI +GE +GF  +    ++  A RDNGRI++H  +VAA +F R+   VPA + GR+ + C+ NIR+YRYA GQRFGKHIDES  + +    S++T+L YLN                                 +EG  L GGETVFY GN G K A    P QG  L+H HG +CL+HEGA V +GVKYLLR+DV+
Sbjct:  105 VKLDLERFAVLRDLIFAVPRCLSPEECAAWIAWGEKRGFASAKQASSAGFAFRDNGRISVHDPEVAAIIFQRLRGVVPAEIDGRKAVGCSPNIRLYRYATGQRFGKHIDESNFEQDLDAWSEFTLLFYLN---------------------------------DEG--LDGGETVFYSGNTGTKEALRVPPAQGLALLHWHGDRCLVHEGANVRAGVKYLLRSDVL 295          
BLAST of mRNA_Ecto-sp8_S_contig10197.319.1 vs. uniprot
Match: A0A813GA74_POLGL (Hypothetical protein n=3 Tax=Polarella glacialis TaxID=89957 RepID=A0A813GA74_POLGL)

HSP 1 Score: 171 bits (434), Expect = 1.720e-48
Identity = 105/270 (38.89%), Postives = 145/270 (53.70%), Query Frame = 3
Query:  117 RRPETLRHTRVYGPLVLP--------DGKG-ENDAVDLELTSKRVYQD------TILSVDGLLSPRECAAWIRYGEGQGFERSFHRQTSEMAHRDNGRITLHSADVAAAVFARVGKFVPANMG--GRRPLACNSNIRIYRYAVGQRFGKHIDESVDDEN-GLTSQWTVLIYLNGXXXXXXXXXXXXXSGSKKKGRSDXXXAFAGAGEEGAPLRGGETVFYKGNYGDKVAASFSPRQGACLVHGHGQQCLLHEGAAVTSGVKYLLRTDVMY 872
            R PE  R   +  P VLP        DG G E +A  L    + ++         I ++D  L+  EC  WI +GE +GFE +  +Q S  AHRDNGRI     +VA+ ++ R+  FVP  +G   R+ L C+  IR+YRY  GQRFG+H+D S ++ + G ++ +TVLIYLNG              G ++              E+   ++GGETVF+K + G K A  F P +G CL HGHG  C+ HEGA V  GVKY+LRTDV+Y
Sbjct:   26 RLPEPDRTIHISAPPVLPPFQESEDTDGAGYEAEAFALPRKMQLMHLSLLTRPVAISAIDNFLTEEECRGWISWGERKGFEEAKQKQNSVFAHRDNGRIEFDGPEVASQIWLRMKPFVPETVGCPPRKALGCSPRIRVYRYTRGQRFGQHVDGSREEPSMGGSTHFTVLIYLNG--------------GDRE--------------EKDLQVKGGETVFWKDHDGKKPALVFPPTRGVCLFHGHGDDCMTHEGAGVEDGVKYVLRTDVVY 267          
BLAST of mRNA_Ecto-sp8_S_contig10197.319.1 vs. uniprot
Match: A0A812Q5H6_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812Q5H6_9DINO)

HSP 1 Score: 170 bits (431), Expect = 4.570e-48
Identity = 105/272 (38.60%), Postives = 144/272 (52.94%), Query Frame = 3
Query:  117 RRPETLRHTRVYGPLVLP--DGKGENDAVDLELTS------KRV---------YQDTILSVDGLLSPRECAAWIRYGEGQGFERSFHRQTSEMAHRDNGRITLHSADVAAAVFARVGKFVPANMG--GRRPLACNSNIRIYRYAVGQRFGKHIDESVDD-ENGLTSQWTVLIYLNGXXXXXXXXXXXXXSGSKKKGRSDXXXAFAGAGEEGAPLRGGETVFYKGNYGDKVAASFSPRQGACLVHGHGQQCLLHEGAAVTSGVKYLLRTDVMY 872
            R PE  R  ++  P+V+P  D + E  A D    S      ++V         +   I ++D  L+  EC  WI +GE +GFE +  +  S  AHRDNGRI   S D+A  ++ R+  FVP  +G   R  L C+  IR+YRY  GQRFG+H+D S D+ E G  + +TVL+YLNG                   G  D          +   +RGGETVF+K + G + A +F P +G CL HGHG +C+ HEGA V  GVKY+LRTDV+Y
Sbjct:   22 RLPEPDRTVQLTVPVVIPPVDFEAEEAAEDSSFASLANGLPRKVQLQHLPLLSHPVRISAIDNFLTEEECLGWISWGERKGFEEAKQKANSVYAHRDNGRIEFSSPDIAYLIWLRIKAFVPDFVGKPARAALGCSPRIRVYRYVKGQRFGQHVDGSRDEPEMGGRTHFTVLVYLNG-------------------GERDP---------KDLQVRGGETVFWKDHDGKRPALAFPPTRGVCLFHGHGDECMTHEGAGVEEGVKYVLRTDVVY 265          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10197.319.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQ80_ECTSI2.210e-15875.14P4Hc domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KGN2_9PHAE3.300e-13398.10P4Hc domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A836CHZ3_9STRA3.620e-7857.99Fe2OG dioxygenase domain-containing protein (Fragm... [more]
A0A7S2UX31_9STRA1.710e-6948.55Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A0L0G5Z2_9EUKA5.040e-6745.28Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
A0A7S2ZAS2_9RHOD1.670e-6346.81Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S2Z9G1_9RHOD1.320e-5248.47Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A2R5GIH8_9STRA1.270e-4844.69Tetraacyldisaccharide 4'-kinase n=1 Tax=Hondaea fe... [more]
A0A813GA74_POLGL1.720e-4838.89Hypothetical protein n=3 Tax=Polarella glacialis T... [more]
A0A812Q5H6_9DINO4.570e-4838.60Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10197contigEcto-sp8_S_contig10197:1230..3715 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score459.1
Seed ortholog evalue1.4e-126
Seed eggNOG ortholog2880.D7FQ80
Model size881
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.Prolyl 4-hydroxylase alpha subunit homologues.
EggNOG OGs28IQ0@1,2QR14@2759
Cds size807
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10197.319.1prot_Ecto-sp8_S_contig10197.319.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10197 1233..3644 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143117.74507-UTR-Ecto-sp8_S_contig10197:1229..12321681143117.74507-UTR-Ecto-sp8_S_contig10197:1229..1232Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10197 1230..1232 -
1681143117.7893727-UTR-Ecto-sp8_S_contig10197:3644..37151681143117.7893727-UTR-Ecto-sp8_S_contig10197:3644..3715Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig10197 3645..3715 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143117.754706-CDS-Ecto-sp8_S_contig10197:1232..13851681143117.754706-CDS-Ecto-sp8_S_contig10197:1232..1385Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10197 1233..1385 -
1681143117.7632642-CDS-Ecto-sp8_S_contig10197:2050..23301681143117.7632642-CDS-Ecto-sp8_S_contig10197:2050..2330Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10197 2051..2330 -
1681143117.7718687-CDS-Ecto-sp8_S_contig10197:2694..28951681143117.7718687-CDS-Ecto-sp8_S_contig10197:2694..2895Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10197 2695..2895 -
1681143117.780459-CDS-Ecto-sp8_S_contig10197:3471..36441681143117.780459-CDS-Ecto-sp8_S_contig10197:3471..3644Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10197 3472..3644 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10197.319.1

>prot_Ecto-sp8_S_contig10197.319.1 ID=prot_Ecto-sp8_S_contig10197.319.1|Name=mRNA_Ecto-sp8_S_contig10197.319.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=269bp
MGKKAKRTTDGTEGPRRPETLRHTRVYGPLVLPDGKGENDAVDLELTSKR
VYQDTILSVDGLLSPRECAAWIRYGEGQGFERSFHRQTSEMAHRDNGRIT
LHSADVAAAVFARVGKFVPANMGGRRPLACNSNIRIYRYAVGQRFGKHID
ESVDDENGLTSQWTVLIYLNGGGEGGGGAAAAGASGSKKKGRSDGGGAFA
GAGEEGAPLRGGETVFYKGNYGDKVAASFSPRQGACLVHGHGQQCLLHEG
AAVTSGVKYLLRTDVMYG*
back to top

mRNA from alignment at Ecto-sp8_S_contig10197:1230..3715-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10197.319.1 ID=mRNA_Ecto-sp8_S_contig10197.319.1|Name=mRNA_Ecto-sp8_S_contig10197.319.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=2486bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10197:1230..3715- (Ectocarpus species8 EcLAC_412)
CCGCAGACCGACCCGATACTGCGTACGCCTTGTGTCGCAGAGCAGGCACA CACAGCAAGCGCAGCCACACCATGGGTAAAAAAGCAAAACGCACAACCGA TGGGACAGAAGGCCCTCGTCGTCCTGAGACTCTGCGACACACAAGAGTCT ACGGACCGCTGGTGCTACCCGACGGCAAGGGCGAGAACGATGCGGTCGAC CTCGAACTCACATCGAAGCGTGTCTATCAAGACACGATTTTGAGGTGGGG GGGGGGAATGAAGTGCTGTCAGTTAATTACGGGCGATGATGCCATGAAAT CCGACAAGCTTATGCTACCTTGAACCTTCAATGGCTTTGCGGTGTGCATG TAAATAAATGTACTTGTCCATATGGATAGTCTACGTAAATGCCAAATCGG TTCAGGGTGCAATCGCGATGTGTTCGCCGTGTGAACATCATCGTGGCTCA CCAACATGAGGTTCGTTTCACACAAAATGTAGCGGTAGTTCTCCTTGCTT CTCGAACCGCCTGGGTTGAAGTTCCAATTCACACTACTTATTCAACCCAC AAACATGTTCAATGCAAGACTACTGCTGTAAACCAACCGCATTTTGCAAC CAACAGACGGGTTCTACAAAATCCCTGTCCTACAAAATCCCTCTCCCCCT ACACACCCCGGCCTAACACCCACTCGGAACCGTCAACATCATCCCCACTT CGGCAGGACCTTCGACACTATTTCATCTGCAAAGAATATGTACTTTCTGG TAAATTCTTGATGCGCTCTTCCGCCGTTCGCCATGACGTCCTACACGACA ACAACAACGTTTCCAACCAGCGTCGACGGCCTGCTGAGCCCCCGTGAGTG CGCCGCCTGGATACGGTACGGCGAAGGCCAGGGTTTCGAGCGGAGCTTCC ATAGACAGACGTCGGAAATGGCCCACCGCGACAACGGGAGGATAACCCTG CACAGCGCCGACGTCGCGGCCGCCGTGTTCGCAAGGGTGGGGAAGTTCGT GCCGGCCAACATGGGCGGAAGGTGCGTCTTGTTGTCCTCCCTCTCTGTGT TTTCGTCCCCTCTTGCTGCGAATGAGTCGCCGATCGGGAAGGCACTCTCA GCAAACGCAGTGCTGTGGGTTGTTCGCGTCCAACCATGTATACTTTCGGT CGTCGTCGTCGTCTCTCCCGTCGCTTGAATCACCCCCTTACGAAGAAAGC ACCGCCATGCGTGGAAAGGATGCGAAAAGCTTTCGGCATGTACAACATCG CTTCATTGGCCTGGGAACGAATCGTGACAGGCAGTGTTTTCTCTTCTGTT TTCTTTGTCCAAGTGTTTTGAGCTCTCTCGGTTCGGTCTCTGTACCTTCT TGCTGCCCACGCGCTACATTCCCCCCCGGGTACAGGCGACCGTTAGCGTG CAACTCCAACATCCGCATCTACCGGTACGCCGTCGGGCAACGGTTCGGCA AGCACATCGACGAAAGCGTCGACGACGAGAACGGGCTGACCAGCCAGTGG ACGGTCCTCATCTACTTGAATGGAGGAGGAGAAGGCGGCGGCGGCGCTGC TGCTGCTGGTGCATCAGGATCGAAGAAGAAGGGTAGGAGTGACGGAGGTG GGGCCTTTGCCGGCGCGGGGGAGGAAGGGGCGCCGCTTCGTGGGGGCGAG ACTGTGTTCTACAAGGTAAGGAGGAGGAGGAGGAGGTGTTGGGCCCCCCA AAATCTCCCTCGTTGTGGAGTTGAGGTTGTCAATTGGATTTGTGTTTCTG GACGACGGCTGACGGCGTTTTTTCGCCGTGTGTGGTGCGAACACGTTGTG GGTTTTGGATTTCCTCTGGAATTGAGCGAAGGATGTATCTTTCACCCGAC TTGGCTCTCCGCCCTCCGCGTTGGGCGTGGGATGCTTGTACATGCACGTG TTGGCATTGTTTGCTTTGTTTTTAATTACCAATACATCGAAATCTACTTG CCTCTGAGACGTCTACTTGCCTCCTGGGTGTTTGCTTTGCGAATGAACGC CACACCTGAGACGTGATGTCCGAAGCCATACAGCATGGGGGGAAAGAGTC CCATCCCTGCTCTCACTACATAGCATCATACGTGCACACGAGGCCGCAGC TGACGCTCTTTGCTGCGTACCATTATTTCCTGTTGGAACAAGAGGCTTCA AACAAATCTTGGCAGAGACCGTATCGTAGTACACAACCCTACTCTCACGC TTACTACAATGCCCTGTTCCTTGATTCCAACGTGTGTGTTGTTGCCGCTC GAACCTTCCCCTCTCTCTCCGCCGTCGTCCTCCGCGCGTTAACTTTCGAT TCGCTCTTGTCCTGTTTGTTGCCCTTCAAGGGCAACTACGGAGACAAGGT CGCGGCGAGTTTCTCGCCGAGACAGGGGGCATGCCTCGTTCACGGCCACG GGCAGCAATGCCTCCTGCACGAAGGCGCCGCGGTGACCTCCGGCGTGAAG TACCTCCTCCGAACAGACGTCATGTACGGGTAGGGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10197:1230..3715-

>mRNA_Ecto-sp8_S_contig10197.319.1 ID=mRNA_Ecto-sp8_S_contig10197.319.1|Name=mRNA_Ecto-sp8_S_contig10197.319.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=807bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10197:1230..3715- (Ectocarpus species8 EcLAC_412)
ATGGGTAAAAAAGCAAAACGCACAACCGATGGGACAGAAGGCCCTCGTCG
TCCTGAGACTCTGCGACACACAAGAGTCTACGGACCGCTGGTGCTACCCG
ACGGCAAGGGCGAGAACGATGCGGTCGACCTCGAACTCACATCGAAGCGT
GTCTATCAAGACACGATTTTGAGCGTCGACGGCCTGCTGAGCCCCCGTGA
GTGCGCCGCCTGGATACGGTACGGCGAAGGCCAGGGTTTCGAGCGGAGCT
TCCATAGACAGACGTCGGAAATGGCCCACCGCGACAACGGGAGGATAACC
CTGCACAGCGCCGACGTCGCGGCCGCCGTGTTCGCAAGGGTGGGGAAGTT
CGTGCCGGCCAACATGGGCGGAAGGCGACCGTTAGCGTGCAACTCCAACA
TCCGCATCTACCGGTACGCCGTCGGGCAACGGTTCGGCAAGCACATCGAC
GAAAGCGTCGACGACGAGAACGGGCTGACCAGCCAGTGGACGGTCCTCAT
CTACTTGAATGGAGGAGGAGAAGGCGGCGGCGGCGCTGCTGCTGCTGGTG
CATCAGGATCGAAGAAGAAGGGTAGGAGTGACGGAGGTGGGGCCTTTGCC
GGCGCGGGGGAGGAAGGGGCGCCGCTTCGTGGGGGCGAGACTGTGTTCTA
CAAGGGCAACTACGGAGACAAGGTCGCGGCGAGTTTCTCGCCGAGACAGG
GGGCATGCCTCGTTCACGGCCACGGGCAGCAATGCCTCCTGCACGAAGGC
GCCGCGGTGACCTCCGGCGTGAAGTACCTCCTCCGAACAGACGTCATGTA
CGGGTAG
back to top