mRNA_Ecto-sp8_S_contig10191.314.1 (mRNA) Ectocarpus species8 EcLAC_412
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Overview
Homology
BLAST of mRNA_Ecto-sp8_S_contig10191.314.1 vs. uniprot
Match: D8LHZ2_ECTSI (Denticleless homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHZ2_ECTSI) HSP 1 Score: 701 bits (1809), Expect = 7.260e-247 Identity = 335/339 (98.82%), Postives = 338/339 (99.71%), Query Frame = 1
Query: 10 PGSSRRGAPAGRHGHGSRYEMSDYVMGLASPGAFPCPEGSPTYNLQFSKRAGDGHLVAFGTERGTLVIVDTRAEAVVQRDHNGPVGWGQTDRSSGWFSERAAKRLGAVSAGVKHGYCRSWGVRQPGVVAQYRALANCIFDVEWLHDDGRIALACADSKIRVHDTETCVEVVVLRGHEGSVKTISANPLDNCVVLSGARDGSFAVWDTRLQQGRPVKKLMNRVVAEEYSAMAWAPANRLQRRMLTPVEQVFMVHYTEDRDPKIPRSYVRMDETVKGGFDGMVCGRPCASTVTSVQWMPDGQKFLTAGQDGLVKLWDTRYVHHPLQEADPDDESASPPLLS 1026
PGSSRRGAPAGRHG+GSRYEMSDYVMGLASPGAFPCPEGSPTYNLQFSKRAGDGH VAFGTERGTLVIVDTRAEAVVQRDHNGPVGWGQTDRSSGWFSERAAKRLGA+SAGVKHGYCRSWGVRQPGVVAQYRALANCIFDVEWLHDDGRIALACADSKIRVHDTETC+EVVVLRGHEGSVKTISANPLDNCVVLSGARDGSFAVWDTRLQQGRPVKKLMNRVVAEEYSAMAWAPANRLQRRMLTPVEQVFMVHYTEDRDPKIPRSYVRMDETVKGGFDGMVCGRPCASTVTSVQWMPDGQKFLTAGQDGLVKLWDTRYVHHPLQEADPDDESASPPLLS
Sbjct: 10 PGSSRRGAPAGRHGYGSRYEMSDYVMGLASPGAFPCPEGSPTYNLQFSKRAGDGHFVAFGTERGTLVIVDTRAEAVVQRDHNGPVGWGQTDRSSGWFSERAAKRLGAISAGVKHGYCRSWGVRQPGVVAQYRALANCIFDVEWLHDDGRIALACADSKIRVHDTETCMEVVVLRGHEGSVKTISANPLDNCVVLSGARDGSFAVWDTRLQQGRPVKKLMNRVVAEEYSAMAWAPANRLQRRMLTPVEQVFMVHYTEDRDPKIPRSYVRMDETVKGGFDGMVCGRPCASTVTSVQWMPDGQKFLTAGQDGLVKLWDTRYVHHPLQEADPDDESASPPLLS 348
BLAST of mRNA_Ecto-sp8_S_contig10191.314.1 vs. uniprot
Match: A0A6H5JP24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP24_9PHAE) HSP 1 Score: 673 bits (1736), Expect = 2.380e-241 Identity = 324/340 (95.29%), Postives = 330/340 (97.06%), Query Frame = 1
Query: 7 RPGSSRRGAPAGRHGHGSRYEMSDYVMGLASPGAFPCPEGSPTYNLQFSKRAGDGHLVAFGTERGTLVIVDTRAEAVVQRDHNGPVGWGQTDRSSGWFSERAAKRLGAVSAGVKHGYCRSWGVRQPGVVAQYRALANCIFDVEWLHDDGRIALACADSKIRVHDTETCVEVVVLRGHEGSVKTISANPLDNCVVLSGARDGSFAVWDTRLQQGRPVKKLMNRVVAEEYSAMAWAPANRLQRRMLTPVEQVFMVHYTEDRDPKIPRSYVRMDETVKGGFDGMVCGRPCASTVTSVQWMPDGQKFLTAGQDGLVKLWDTRYVHHPLQEADPDDESASPPLLS 1026
R SSRRGAPAG HG+GSRY+MSDYVMGLASPGAFPCPEGSPTYNLQFSKRAGDGHLVAFGTERGTLVIVDTRAEAVVQRDHNGPVGWGQTDRSS WFSERAAKRLGA SAGVKHGYCRSWGVRQPGVVAQYRAL NCIFDVEWLHDDGRIALACADSKIRVHDTETCVEVVVLRGHEGSVKTISANPLDNCV+LSGARDGSFAVWDTRLQQGRPVKKLMNRVVAEEYSA+AW PANRLQRR+LTPVEQVFM HYTEDRDPKIPRSYVRMDETVKGGFDGMVCGRPCASTVTSVQWMPDGQ FLTAGQDGL+KLWDTRYVHHPLQEADPDDESAS PLLS
Sbjct: 3 RTSSSRRGAPAGPHGYGSRYKMSDYVMGLASPGAFPCPEGSPTYNLQFSKRAGDGHLVAFGTERGTLVIVDTRAEAVVQRDHNGPVGWGQTDRSSDWFSERAAKRLGA-SAGVKHGYCRSWGVRQPGVVAQYRALVNCIFDVEWLHDDGRIALACADSKIRVHDTETCVEVVVLRGHEGSVKTISANPLDNCVILSGARDGSFAVWDTRLQQGRPVKKLMNRVVAEEYSALAWTPANRLQRRLLTPVEQVFMAHYTEDRDPKIPRSYVRMDETVKGGFDGMVCGRPCASTVTSVQWMPDGQTFLTAGQDGLIKLWDTRYVHHPLQEADPDDESASLPLLS 341
BLAST of mRNA_Ecto-sp8_S_contig10191.314.1 vs. uniprot
Match: A0A2P6S5R7_ROSCH (Putative transcription factor WD40-like family n=2 Tax=Rosoideae TaxID=171638 RepID=A0A2P6S5R7_ROSCH) HSP 1 Score: 102 bits (254), Expect = 1.980e-20 Identity = 90/323 (27.86%), Postives = 124/323 (38.39%), Query Frame = 1
Query: 52 HGSRYEMSDYVMGLASP----GAFPCPEGSPTYNLQFSKRAGDGHLVAFGTERGTLVIVDTRAEAVVQRDHNGPVGWGQTDRSSGWFSERAAKRLGAVSAGVKHGYCRSWGVRQPGVVAQYRALANCIFDVEWLHDDGRIALACADSKIRVHDTETCVEVVVLRGHEGSVKTISANPLDNCVVLSGARDGSFAVWDTRLQQGRPVKKLMNRVVAEEYSAMAWAPANRLQRRMLTPVEQVFMVHYTEDRDPKIPRSYVRMDETVKGGFDGMVCGRPCASTVTSVQWMPDGQKFLTAGQ-DGLVKLWDTRYVHHPLQEADPDDES 1005
HGSR Y+ LAS GA P + F K + + H+VA E G L + DTR + FS A+ R A V W V Q N +FD+ W+ DD +I A D ++V D + VL GH GSVK++S +P + +++SG+RDGSFA+WD R N L + P V H T P+ RS G+ ++TSV + D TAG D +VK WDTR + + + P ES
Sbjct: 19 HGSRVPKRSYIDCLASDFSEIGAIAAEHNGPPMAISFGKTSRNSHIVAMSDEDGYLSLFDTRRK----------------------FSASASHRENADRTKVY-----DWVVHQ-----------NAVFDICWIKDDTQIVTASGDQTVKVWDIQEKKCTAVLVGHTGSVKSLSPHPTNPEIIVSGSRDGSFALWDMRCNS---------------------TSKNTLAELCICPTAVVNGAHLT----PRAKRSRR---------------GKAAPRSITSVLNLKDEVSIATAGAVDSVVKFWDTRSLKSIVTQTCPHMES 263
BLAST of mRNA_Ecto-sp8_S_contig10191.314.1 vs. uniprot
Match: A0A4Y1R8X6_PRUDU (Transducin/WD40 repeat-like superfamily protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1R8X6_PRUDU) HSP 1 Score: 97.8 bits (242), Expect = 4.330e-19 Identity = 86/334 (25.75%), Postives = 126/334 (37.72%), Query Frame = 1
Query: 52 HGSRYEMSDYVMGLASP----GAFPCPEGSPTYNLQFSKRAGDGHLVAFGTERGTLVIVDTRAEAVVQRDHNGPVGWGQTDRSSGWFSERAAKRLGAVSAGVKHGYCRSWGVRQPGVVAQYRALANCIFDVEWLHDDGRIALACADSKIRVHDTETCVEVVVLRGHEGSVKTISANPLDNCVVLSGARDGSFAVWDTRLQQGRPVKKLMNRVV----AEEYSAMAWAPANRLQRRMLTPVEQVFMVHYTEDRDPKIPRSYVRMDETVKGGFDGMVCGRPCASTVTSVQWMPDGQKFLTAGQ-DGLVKLWDTRYVHHPLQEADPDDESASPPLLS 1026
HG R Y+ GLAS GA P + F K + +VA E G L + DTR + +S F E A K V + A N +FDV W+ DD +I A D I+V D + +L GH GSVK++ +P + +++SG+RDGSFA+WD R K + + A A + A R++R G+ + ++TSV ++ D TAG D +VK WDTR + + + + P ES +LS
Sbjct: 72 HGFRAPKRPYINGLASDFNEIGAIAAEHNGPPMAISFGKTCKNSDIVAMSDEDGYLSLFDTRRKF----------------SASASFQENADKTK----------------------VCDWVAHQNAVFDVCWIKDDTQIMTASGDQTIKVWDIQEKKCTAILMGHTGSVKSLCPHPTNPEIIVSGSRDGSFALWDMRCNSSS--KNIHGEIAICSTAVVKGAHLFPRAKRVRR------------------------------------------GKAASMSITSVLYLKDEVSIATAGAVDSIVKFWDTRSLKNVVTQTSPHLESTEKSVLS 323
BLAST of mRNA_Ecto-sp8_S_contig10191.314.1 vs. uniprot
Match: M5XBK0_PRUPE (Uncharacterized protein n=8 Tax=Prunus TaxID=3754 RepID=M5XBK0_PRUPE) HSP 1 Score: 95.1 bits (235), Expect = 6.290e-18 Identity = 84/327 (25.69%), Postives = 123/327 (37.61%), Query Frame = 1
Query: 52 HGSRYEMSDYVMGLASP----GAFPCPEGSPTYNLQFSKRAGDGHLVAFGTERGTLVIVDTRAEAVVQRDHNGPVGWGQTDRSSGWFSERAAKRLGAVSAGVKHGYCRSWGVRQPGVVAQYRALANCIFDVEWLHDDGRIALACADSKIRVHDTETCVEVVVLRGHEGSVKTISANPLDNCVVLSGARDGSFAVWDTRLQQGRPVKKLMNRVV----AEEYSAMAWAPANRLQRRMLTPVEQVFMVHYTEDRDPKIPRSYVRMDETVKGGFDGMVCGRPCASTVTSVQWMPDGQKFLTAGQ-DGLVKLWDTRYVHHPLQEADPDDES 1005
HG R Y+ GLAS GA P + F K + +VA E G L + DTR + +S F E A K V + A N +FDV W+ DD +I A D I+V D + +L GH GSVK++ +P + +++SG+RDGSFA+WD R K + + A A + A R++R G+ + ++TSV ++ D TAG D +VK WDTR + + + + P ES
Sbjct: 19 HGFRAPKRPYINGLASDFHEIGAIAAEHNGPPMAISFGKTCKNSDIVAMSDEDGYLSLFDTRRKF----------------SASASFQENADKTK----------------------VCDWVAHQNAVFDVCWIKDDTQIMTASGDQTIKVWDIQEKKCTAILMGHTGSVKSLCPHPTNPEIIVSGSRDGSFALWDMRCNSSS--KNIHGEIAICSTAVVKGAHLFPRAKRVRR------------------------------------------GKAASMSITSVLYLKDEVSIATAGAVDSIVKFWDTRSLKNVVTQTSPHLES 263
BLAST of mRNA_Ecto-sp8_S_contig10191.314.1 vs. uniprot
Match: A0A388LAS4_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388LAS4_CHABU) HSP 1 Score: 95.5 bits (236), Expect = 6.460e-18 Identity = 84/301 (27.91%), Postives = 113/301 (37.54%), Query Frame = 1
Query: 112 PCPEGSPTYNLQFSKRAGDGHLVAFGTERGTLVIVDTRAEAVVQRDHNGPVGWGQTDRSSGWFSERAAKRLGAVSAGVKHGYCRSWGVRQPGVVAQYRALANCIFDVEWLHDDGRIALACADSKIRVHDTETCVEVVVLRGHEGSVKTISANPLDNCVVLSGARDGSFAVWDTRLQQGRPVKKLMNRVVAEEYSAMAWAPANRLQRRMLTPVEQVFMVHYTEDRDPKIPRSYVRMDETVKGGFDGMVCGRPCASTVTSVQWMPDGQKFLTAG-QDGLVKLWDTRYVHHPLQEADPDDESAS 1011
P +P + L FSK G L+A E G + I DTR R + +E K VK VAQ+ A N IFDV W D + A D +R+ D ET E V++GH GSVK++S +P SG+RDGS +WD R + + Q P E + H + S R KG G +VT+V ++ D TAG DG+VK WD R HP+ + P E +S
Sbjct: 70 PAGSNTPPFGLAFSKVKQGGALLAVADEEGFVSIHDTR-------------------RRFPFVNETRGKD------DVK--------------VAQWIAHNNAIFDVAWTRADTVLLTASGDQSVRMWDVETRKETAVMKGHTGSVKSLSVSPTQQDCFASGSRDGSVMLWDVRCGEAYSINN---------------------QESFFRPFEVIVDAHLS---------SKTRKHRRRKGSVQG-----DPKQSVTAVLYLYDENLLATAGASDGVVKFWDVRNTKHPVMQT-PHSEGSS 295
BLAST of mRNA_Ecto-sp8_S_contig10191.314.1 vs. uniprot
Match: A0A2C9U7Y3_MANES (Uncharacterized protein n=1 Tax=Manihot esculenta TaxID=3983 RepID=A0A2C9U7Y3_MANES) HSP 1 Score: 94.7 bits (234), Expect = 8.390e-18 Identity = 74/298 (24.83%), Postives = 126/298 (42.28%), Query Frame = 1
Query: 121 EGSPTYNLQFSKRAGDGHLVAFGTERGTLVIVDTRAEAVVQRDHNGPVGWGQTDRSSGWFSERAAKRLGAVSAGVKHGYCRSWGVRQPGVVAQYRALANCIFDVEWLHDDGRIALACADSKIRVHDTETCVEVVVLRGHEGSVKTISANPLDNCVVLSGARDGSFAVWDTRLQQGRPVKKLMNRVVAEEYSAMAWAPANRLQRRMLTPVEQVFMVHYTEDRDPKIPRSYVRMDETVKGGFDGMVCGRPCASTVTSVQWMPDGQKFLTAGQ-DGLVKLWDTRYVHHPLQEADPDDESAS 1011
E +P + F+K + + H++A E G L + DTR N P Q + +S+++ ++ + A N IFD+ W+ +D + A D I+V D + VL GH GS+K+I +P ++ +++SG+RDGSFA+WD R + A NR +TP + H + + ++ R + + ++TSV ++ DG TAG D +VK WDTRY+ + +A P +S++
Sbjct: 44 EETPPLAISFAKSSKNSHVLAVSDEDGYLSLFDTRK--------NFPPYASQQE-----YSDKSR-------------------------ISDWEAHQNAIFDICWIKEDTNLLTASGDQTIKVWDAQKQKCTGVLMGHTGSIKSIYCHPTNSDLLVSGSRDGSFAMWDLRCKN---------------------ASKNRRTEACITPTTMIRRAHLSP-QSKRVRRK------------------KAASMSITSVLYLKDGISIATAGAVDSIVKFWDTRYLKAQVTQACPRPKSST 263
BLAST of mRNA_Ecto-sp8_S_contig10191.314.1 vs. uniprot
Match: UPI000870AF94 (denticleless protein homolog n=1 Tax=Pyrus x bretschneideri TaxID=225117 RepID=UPI000870AF94) HSP 1 Score: 94.0 bits (232), Expect = 1.560e-17 Identity = 84/327 (25.69%), Postives = 121/327 (37.00%), Query Frame = 1
Query: 52 HGSRYEMSDYVMGLASP----GAFPCPEGSPTYNLQFSKRAGDGHLVAFGTERGTLVIVDTRAEAVVQRDHNGPVGWGQTDRSSGWFSERAAKRLGAVSAGVKHGYCRSWGVRQPGVVAQYRALANCIFDVEWLHDDGRIALACADSKIRVHDTETCVEVVVLRGHEGSVKTISANPLDNCVVLSGARDGSFAVWDTRLQQGRPVKKLMNRV----VAEEYSAMAWAPANRLQRRMLTPVEQVFMVHYTEDRDPKIPRSYVRMDETVKGGFDGMVCGRPCASTVTSVQWMPDGQKFLTAGQ-DGLVKLWDTRYVHHPLQEADPDDES 1005
HG R YV GL S GA P ++ F K H++A E G L + DTR++ H E A K V + A N +FD+ W+ DD +I A D I+V D + +L GH GSVK++ +P + V++SG+RDGSFA+WD R K + V A A A R++RR + + ++TSV ++ D TAG D +VK WDTR + + + + P ES
Sbjct: 19 HGFRARKRRYVNGLESDFYEIGAIAAEHNGPPMSISFGKTWKSSHIIAMSDEDGYLSLFDTRSKFSASASHQ----------------ENADKTK----------------------VCDWVAHHNTVFDICWIKDDTQIMTASGDQTIKVWDIQEKKCTAILMGHTGSVKSLCPHPTNPEVIVSGSRDGSFALWDMRCTSSS--KNMQGEVSICSTAVVKGAHIVPRAKRVRRR------------------------------------------KAVSMSITSVLYLKDEVSIATAGAVDSVVKFWDTRSLKNVVTQTCPQPES 263
BLAST of mRNA_Ecto-sp8_S_contig10191.314.1 vs. uniprot
Match: A0A0K9RSK0_SPIOL (Uncharacterized protein n=1 Tax=Spinacia oleracea TaxID=3562 RepID=A0A0K9RSK0_SPIOL) HSP 1 Score: 92.8 bits (229), Expect = 3.840e-17 Identity = 74/290 (25.52%), Postives = 120/290 (41.38%), Query Frame = 1
Query: 127 SPTYNLQFSKRAGDGHLVAFGTERGTLVIVDTRAEAVVQRDHNGPVGWGQTDRSSGWFSERAAKRLGAVSAGVKHGYCRSWGVRQPGVVAQYRALANCIFDVEWLHDDGRIALACADSKIRVHDTETCVEVVVLRGHEGSVKTISANPLDNCVVLSGARDGSFAVWDTRLQQGRPVKKLMNRVVAEEYSAMAWAPANRLQRRMLTPVEQVFMVHYTEDRDPKIPRSYVRMDETVKGGFDGMVCGRPCASTVTSVQWMPDGQKFLTAGQ-DGLVKLWDTRYVHHPLQEADP 993
+P ++ F+K + H++ E G + +DTR + + A ++ A A +V+++ A N ++D+ W DD + A AD I++ D E +L+GHEGSVK++S +P ++ +V+SG+RDGSFA+WD R + + M W +T EQV H + + K + + TVTSV ++ D TAG D +VK WDTR + P +A P
Sbjct: 57 TPPMSVSFAKTIRNAHILGVTDEDGYVNFIDTRLK----------------------LNPSATEQENAEKA----------------IVSRWVAHENSVYDICWTKDDTSVLTASADHTIKLWDVEQKKCYGLLKGHEGSVKSVSCHPTNSDLVVSGSRDGSFALWDLR---------------CKPHQGMEW----------ITSTEQVKGAHASAKQ---------------KRSRNKKAASPLPSRTVTSVLYLKDEISIATAGAVDSVVKFWDTRNLRAPAAQASP 268
BLAST of mRNA_Ecto-sp8_S_contig10191.314.1 vs. uniprot
Match: A0A251S822_HELAN (Putative coatomer beta' subunit (COPB2), WD40 repeat, conserved site n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251S822_HELAN) HSP 1 Score: 90.9 bits (224), Expect = 8.660e-17 Identity = 76/288 (26.39%), Postives = 121/288 (42.01%), Query Frame = 1
Query: 127 SPTYNLQFSKRAGDGHLVAFGTERGTLVIVDTRAEAVVQRDHNGPVGWGQTDRSSGWFSERAAKRLGAVSAGVKHGYCRSWGVRQPGVVAQYRALANCIFDVEWLHDDGRIALACADSKIRVHDTETCVEVVVLRGHEGSVKTISANPLDNCVVLSGARDGSFAVWDTRLQQGRPVKKLMNRVVAEEYSAMAWAPANRLQRRMLTPVEQVFMVHYTEDRDPKIPRSYVRMDETVKGGFDGMVCGRPCASTVTSVQWMPDGQKFLTAGQ-DGLVKLWDTRYVHHPLQEA 987
SP L F K + + H++A E G + + +TR N P + +S +E+A K ++ A N +FD+ W+ DD + AC D I+V D++ + L GH GSVK+ISA+P ++ +++SG+RDGSFA+WD R + + P +L ++ V H M +VK + + +VTSV +M D TAG D ++K WDTR + P+ +A
Sbjct: 52 SPPMALSFCKTSKNAHILAVTGEDGYVCLYNTRV--------NFP-----SSSTSAENAEKARK-------------------------CEWLAHDNAVFDLCWIKDDTNLLTACGDHSIKVWDSQERKCLFALTGHTGSVKSISAHPSNHDIIVSGSRDGSFALWDLR-----------------SFKSTRAHPNTFEYYHILRTIKTVQGAH---------------MSSSVKTRGRN---SKAASMSVTSVLYMKDEVSIATAGAVDSVIKFWDTRNLKAPITQA 266 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10191.314.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig10191.314.1 >prot_Ecto-sp8_S_contig10191.314.1 ID=prot_Ecto-sp8_S_contig10191.314.1|Name=mRNA_Ecto-sp8_S_contig10191.314.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=342bp ACRPGSSRRGAPAGRHGHGSRYEMSDYVMGLASPGAFPCPEGSPTYNLQFback to top mRNA from alignment at Ecto-sp8_S_contig10191:68..6941+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp8_S_contig10191.314.1 ID=mRNA_Ecto-sp8_S_contig10191.314.1|Name=mRNA_Ecto-sp8_S_contig10191.314.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=6874bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10191:68..6941+ (Ectocarpus species8 EcLAC_412)back to top Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10191:68..6941+ >mRNA_Ecto-sp8_S_contig10191.314.1 ID=mRNA_Ecto-sp8_S_contig10191.314.1|Name=mRNA_Ecto-sp8_S_contig10191.314.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=1026bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10191:68..6941+ (Ectocarpus species8 EcLAC_412)back to top |