mRNA_Ecto-sp8_S_contig101831.303.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig101831.303.1
Unique NamemRNA_Ecto-sp8_S_contig101831.303.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig101831.303.1 vs. uniprot
Match: D8LJX0_ECTSI (MutS protein homolog 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJX0_ECTSI)

HSP 1 Score: 136 bits (342), Expect = 9.770e-36
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 1 
Query:    1 VSWVQDSQSYAKTLAALQGVDPDEILLHDGTRGRVLASKVVGAFHQIEKSCCRVLFVSRQYFDQDK 198
            VSWVQDSQSYAKTLAALQGVDPDEILLHDGTRGRVLASKVVGAFHQIEKSCCRVLFVSRQYFDQDK
Sbjct:   11 VSWVQDSQSYAKTLAALQGVDPDEILLHDGTRGRVLASKVVGAFHQIEKSCCRVLFVSRQYFDQDK 76
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BLAST of mRNA_Ecto-sp8_S_contig101831.303.1 vs. uniprot
Match: A0A836CNW6_9STRA (Muts protein 4 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNW6_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 1.520e-16
Identity = 40/66 (60.61%), Postives = 53/66 (80.30%), Query Frame = 1 
Query:    1 VSWVQDSQSYAKTLAALQGVDPDEILLHDGTRGRVLASKVVGAFHQIEKSCCRVLFVSRQYFDQDK 198
            ++ + D+QSYA+T+A L+ + P EILLHDG R RVL+ K+V AFH+ ++S  RVLFVSRQYFDQDK
Sbjct:   83 ITTLSDTQSYAQTMAHLESLQPQEILLHDGARSRVLSLKIVEAFHKDDES--RVLFVSRQYFDQDK 146
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig101831.303.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LJX0_ECTSI9.770e-36100.00MutS protein homolog 4 n=1 Tax=Ectocarpus siliculo... [more]
A0A836CNW6_9STRA1.520e-1660.61Muts protein 4 n=1 Tax=Tribonema minus TaxID=30337... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig101831contigEcto-sp8_S_contig101831:335..532 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score136.3
Seed ortholog evalue5e-30
Seed eggNOG ortholog2880.D8LJX0
Preferred nameMSH4
Model size198
KEGG koko:K08740
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000228,GO:0000280,GO:0000710,GO:0000793,GO:0000794,GO:0000795,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005911,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007127,GO:0007129,GO:0007131,GO:0008094,GO:0008150,GO:0008152,GO:0009506,GO:0009987,GO:0010777,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022402,GO:0022414,GO:0022607,GO:0030054,GO:0030983,GO:0031974,GO:0031981,GO:0033554,GO:0034641,GO:0035825,GO:0042623,GO:0043073,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0045132,GO:0045143,GO:0046483,GO:0048285,GO:0050896,GO:0051026,GO:0051276,GO:0051321,GO:0051716,GO:0055044,GO:0061982,GO:0070013,GO:0070192,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0098813,GO:0099086,GO:0140013,GO:1901360,GO:1901363,GO:1903046
Exons1
EggNOG free text desc.chiasma assembly
EggNOG OGsCOG0249@1,KOG0220@2759
Cds size198
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143116.4013395-CDS-Ecto-sp8_S_contig101831:334..5321681143116.4013395-CDS-Ecto-sp8_S_contig101831:334..532Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig101831 335..532 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig101831.303.1prot_Ecto-sp8_S_contig101831.303.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig101831 335..532 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig101831.303.1

>prot_Ecto-sp8_S_contig101831.303.1 ID=prot_Ecto-sp8_S_contig101831.303.1|Name=mRNA_Ecto-sp8_S_contig101831.303.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=66bp
VSWVQDSQSYAKTLAALQGVDPDEILLHDGTRGRVLASKVVGAFHQIEKS
CCRVLFVSRQYFDQDK
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mRNA from alignment at Ecto-sp8_S_contig101831:335..532+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig101831.303.1 ID=mRNA_Ecto-sp8_S_contig101831.303.1|Name=mRNA_Ecto-sp8_S_contig101831.303.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=198bp|location=Sequence derived from alignment at Ecto-sp8_S_contig101831:335..532+ (Ectocarpus species8 EcLAC_412)
GTGAGTTGGGTCCAAGACTCCCAGAGCTACGCGAAGACCCTCGCCGCTCT
GCAGGGCGTGGATCCCGACGAGATCCTGTTGCACGACGGCACCCGCGGGC
GCGTGCTGGCGTCCAAGGTGGTCGGCGCGTTCCACCAGATCGAAAAATCT
TGCTGCCGCGTGCTCTTTGTTTCGAGGCAGTATTTCGACCAGGACAAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig101831:335..532+

>mRNA_Ecto-sp8_S_contig101831.303.1 ID=mRNA_Ecto-sp8_S_contig101831.303.1|Name=mRNA_Ecto-sp8_S_contig101831.303.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=198bp|location=Sequence derived from alignment at Ecto-sp8_S_contig101831:335..532+ (Ectocarpus species8 EcLAC_412)
GTGAGTTGGGTCCAAGACTCCCAGAGCTACGCGAAGACCCTCGCCGCTCT
GCAGGGCGTGGATCCCGACGAGATCCTGTTGCACGACGGCACCCGCGGGC
GCGTGCTGGCGTCCAAGGTGGTCGGCGCGTTCCACCAGATCGAAAAATCT
TGCTGCCGCGTGCTCTTTGTTTCGAGGCAGTATTTCGACCAGGACAAG
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