mRNA_Ecto-sp8_S_contig10183.301.1 (mRNA) Ectocarpus species8 EcLAC_412
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Overview
Homology
BLAST of mRNA_Ecto-sp8_S_contig10183.301.1 vs. uniprot
Match: D7G590_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G590_ECTSI) HSP 1 Score: 343 bits (881), Expect = 2.710e-119 Identity = 179/181 (98.90%), Postives = 179/181 (98.90%), Query Frame = 1
Query: 1 MARTFALVACLVALIAQASSFMIGPGAGAAATIRAQRQGAAVSGFTGCNPVCQRDATTDRSALRMMRHRKGFKKLNLPADQRKALLRGLTTQIIRHGRITTTMVRAKAVRKRVDHMITLSKNGSLHARRQAMGYIYDKQLVHALFESGAERYGERPGGYTRIIRTTPRKGDNAKMAIIELV 543
MARTFALVACLVALIAQASSFMIGPG GAAATIRAQRQGAAVSGFTGCNPVCQRDATTDRSALRMMRHRKGFKKLNLPADQRKALLRGLTTQIIRHGRITTTMVRAKAVRK VDHMITLSKNGSLHARRQAMGYIYDKQLVHALFESGAERYGERPGGYTRIIRTTPRKGDNAKMAIIELV
Sbjct: 1 MARTFALVACLVALIAQASSFMIGPGGGAAATIRAQRQGAAVSGFTGCNPVCQRDATTDRSALRMMRHRKGFKKLNLPADQRKALLRGLTTQIIRHGRITTTMVRAKAVRKHVDHMITLSKNGSLHARRQAMGYIYDKQLVHALFESGAERYGERPGGYTRIIRTTPRKGDNAKMAIIELV 181
BLAST of mRNA_Ecto-sp8_S_contig10183.301.1 vs. uniprot
Match: A0A7S1DX23_9STRA (Hypothetical protein n=2 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1DX23_9STRA) HSP 1 Score: 194 bits (492), Expect = 4.400e-60 Identity = 107/181 (59.12%), Postives = 131/181 (72.38%), Query Frame = 1
Query: 10 TFALVACLVALIAQASSFMIGPGAGAAATIRAQRQGAAVSGFTGCNPVCQRDATT---DRSALRMMRHRKGFKKLNLPADQRKALLRGLTTQIIRHGRITTTMVRAKAVRKRVDHMITLSKNGSLHARRQAMGYIYDKQLVHALFESGAERYGERPGGYTRIIRTTPRKGDNAKMAIIELV 543
T ++ L +IA AS++++G G+A +G+ G + Q TT +S L MMRHRKGFKKL PADQRKALLR LTT+IIRHGRI TT+VRA+AVRK VDHMITL K G LHARRQAM ++YDK LVHALF++ ERYG+R GGYTR++RT PR+GDNAKMA+IELV
Sbjct: 15 TMRILLLLSVMIAGASAYVVG--------------GSAFTGY-GMATLQQAPPTTISRTKSNLDMMRHRKGFKKLGKPADQRKALLRALTTEIIRHGRIKTTLVRARAVRKHVDHMITLGKRGDLHARRQAMSWVYDKNLVHALFDAAPERYGDRNGGYTRVLRTVPRQGDNAKMAVIELV 180
BLAST of mRNA_Ecto-sp8_S_contig10183.301.1 vs. uniprot
Match: A0A7S3P3S4_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P3S4_9STRA) HSP 1 Score: 191 bits (485), Expect = 3.250e-59 Identity = 96/142 (67.61%), Postives = 112/142 (78.87%), Query Frame = 1
Query: 133 FTGCNPVCQRDATTD-----RSALRMMRHRKGFKKLNLPADQRKALLRGLTTQIIRHGRITTTMVRAKAVRKRVDHMITLSKNGSLHARRQAMGYIYDKQLVHALFESGAERYGERPGGYTRIIRTTPRKGDNAKMAIIELV 543
F G + + TTD RS L MMRHRKGFK L PADQRKALLR LTT++IRHGRI TT+VRAKAVRK VDH+I L K G LHARRQAM ++YDKQLVHALFE+ +RYG++ GGYTR++RT PR+GDNAKMA+IELV
Sbjct: 25 FLGRSVMTTASTTTDSRTAARSELSMMRHRKGFKTLGKPADQRKALLRALTTEVIRHGRIKTTLVRAKAVRKHVDHIIELGKRGDLHARRQAMAWVYDKQLVHALFEAAPDRYGDQNGGYTRVLRTVPRQGDNAKMAVIELV 166
BLAST of mRNA_Ecto-sp8_S_contig10183.301.1 vs. uniprot
Match: A0A6V2NXL1_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2NXL1_9STRA) HSP 1 Score: 189 bits (480), Expect = 1.870e-58 Identity = 96/145 (66.21%), Postives = 112/145 (77.24%), Query Frame = 1
Query: 124 VSGFTGCNPVCQ-----RDATTDRSALRMMRHRKGFKKLNLPADQRKALLRGLTTQIIRHGRITTTMVRAKAVRKRVDHMITLSKNGSLHARRQAMGYIYDKQLVHALFESGAERYGERPGGYTRIIRTTPRKGDNAKMAIIELV 543
+S FTG + + R A RS L MMRHR KKLN PADQRKALLR LTT++IRHGRI TT+VRAKAVRK VDHMI L K G LHARRQA+G++YDK LVH+LFE+ ERY +R GGYTR++RT PR+GDNAKMA+IELV
Sbjct: 22 LSSFTGTSITLEPTYVVRGAPAGRSDLSMMRHRNKLKKLNKPADQRKALLRALTTEVIRHGRIKTTLVRAKAVRKHVDHMIELGKRGDLHARRQALGWVYDKDLVHSLFEAAPERYSDRNGGYTRVLRTMPRQGDNAKMAVIELV 166
BLAST of mRNA_Ecto-sp8_S_contig10183.301.1 vs. uniprot
Match: A0A7S2HZN5_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HZN5_9STRA) HSP 1 Score: 187 bits (476), Expect = 7.800e-58 Identity = 91/128 (71.09%), Postives = 106/128 (82.81%), Query Frame = 1
Query: 160 RDATTDRSALRMMRHRKGFKKLNLPADQRKALLRGLTTQIIRHGRITTTMVRAKAVRKRVDHMITLSKNGSLHARRQAMGYIYDKQLVHALFESGAERYGERPGGYTRIIRTTPRKGDNAKMAIIELV 543
R + R+ L MMRHRK KKLN PADQRKALLR LTT++IRHGRI TT+VRAKAVRK VDHMI L K G LHARRQA+G++YDK LVH+LFE+ ERY +R GGYTR++RT PR+GDNAKMA+IELV
Sbjct: 40 RGVSNGRADLSMMRHRKKLKKLNKPADQRKALLRALTTEVIRHGRIKTTLVRAKAVRKHVDHMIELGKRGDLHARRQALGWVYDKDLVHSLFEAAPERYSDRNGGYTRVLRTMPRQGDNAKMAVIELV 167
BLAST of mRNA_Ecto-sp8_S_contig10183.301.1 vs. uniprot
Match: A0A7S0CE24_9STRA (Hypothetical protein n=2 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CE24_9STRA) HSP 1 Score: 187 bits (475), Expect = 1.180e-57 Identity = 102/182 (56.04%), Postives = 126/182 (69.23%), Query Frame = 1
Query: 7 RTFALVACLVALIAQASSFMIGPGAGAAATIRAQRQGAAVSGFTGCNPVCQRDATT---DRSALRMMRHRKGFKKLNLPADQRKALLRGLTTQIIRHGRITTTMVRAKAVRKRVDHMITLSKNGSLHARRQAMGYIYDKQLVHALFESGAERYGERPGGYTRIIRTTPRKGDNAKMAIIELV 543
R FAL++ L +LIA +S+F +G + S F G Q T R L MMRHRK KL PADQRKALLR LTT++IRHGRI TT++RAKAVRK VDHMITL K+GSLH+RRQA+ ++YDK LVHALF++ +RYG+R GGY R++RT PR+GDNAKMA+IELV
Sbjct: 2 RVFALLSILSSLIASSSAFGVGS--------------MSCSSFAGNTVAVQPSYDTYERSRGDLSMMRHRKKLAKLGKPADQRKALLRALTTEVIRHGRIKTTLIRAKAVRKHVDHMITLGKDGSLHSRRQALAWVYDKNLVHALFDAAPDRYGDREGGYCRVLRTMPRQGDNAKMAVIELV 169
BLAST of mRNA_Ecto-sp8_S_contig10183.301.1 vs. uniprot
Match: A0A1Z5J8C0_FISSO (Large subunit ribosomal protein L17 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J8C0_FISSO) HSP 1 Score: 187 bits (475), Expect = 1.300e-57 Identity = 91/124 (73.39%), Postives = 104/124 (83.87%), Query Frame = 1
Query: 172 TDRSALRMMRHRKGFKKLNLPADQRKALLRGLTTQIIRHGRITTTMVRAKAVRKRVDHMITLSKNGSLHARRQAMGYIYDKQLVHALFESGAERYGERPGGYTRIIRTTPRKGDNAKMAIIELV 543
T RS L MMRHRKGFK L PADQRKALLR LTT++IRHGRI TT+VRAKAVRK VDHMI L K G LHARRQAM ++YDK LVH+LFE+ +RYGE+ GGYTR++RT R+GDNAKMAI+ELV
Sbjct: 49 TGRSELNMMRHRKGFKTLGKPADQRKALLRALTTEVIRHGRIKTTLVRAKAVRKHVDHMIELGKRGDLHARRQAMAWVYDKNLVHSLFEAAPDRYGEQNGGYTRVLRTVARQGDNAKMAILELV 172
BLAST of mRNA_Ecto-sp8_S_contig10183.301.1 vs. uniprot
Match: K0TAZ9_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TAZ9_THAOC) HSP 1 Score: 187 bits (474), Expect = 1.280e-56 Identity = 98/145 (67.59%), Postives = 110/145 (75.86%), Query Frame = 1
Query: 124 VSGFTGCN-----PVCQRDATTDRSALRMMRHRKGFKKLNLPADQRKALLRGLTTQIIRHGRITTTMVRAKAVRKRVDHMITLSKNGSLHARRQAMGYIYDKQLVHALFESGAERYGERPGGYTRIIRTTPRKGDNAKMAIIELV 543
VS FTG + R + S+L MMRHRK KL PADQRKALLR LTT+IIRHGRI TT VRAKAVRK VDHM+ L K G LHARRQA+G+IYDK LVHALFE+ ERYGER GGYTR++RT PR+GDNAKMA+IELV
Sbjct: 90 VSSFTGTHISTVMEPAARAHHSKSSSLEMMRHRKRVPKLGKPADQRKALLRALTTEIIRHGRIKTTAVRAKAVRKHVDHMVELGKRGDLHARRQALGWIYDKDLVHALFEAAPERYGERNGGYTRVLRTMPRQGDNAKMAVIELV 234
BLAST of mRNA_Ecto-sp8_S_contig10183.301.1 vs. uniprot
Match: A0A448ZH01_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZH01_9STRA) HSP 1 Score: 184 bits (467), Expect = 1.410e-56 Identity = 94/138 (68.12%), Postives = 111/138 (80.43%), Query Frame = 1
Query: 133 FTGCNPVCQRD-ATTDRSALRMMRHRKGFKKLNLPADQRKALLRGLTTQIIRHGRITTTMVRAKAVRKRVDHMITLSKNGSLHARRQAMGYIYDKQLVHALFESGAERYGERPGGYTRIIRTTPRKGDNAKMAIIELV 543
FTG +PVC + A+ + L M+ HRKGFKKL PADQRKALLR LTT+ IRHGRI TT+VRA+AVRK VDHMI L K G LHARRQAMG++YDKQLVH+LFE+ +RY +R GGY R++RT R+GDNAKMAIIELV
Sbjct: 23 FTG-SPVCLSERASAPSTQLSMISHRKGFKKLGKPADQRKALLRALTTETIRHGRIKTTLVRARAVRKHVDHMIELGKRGDLHARRQAMGWMYDKQLVHSLFEAAPDRYADRNGGYCRVLRTVARQGDNAKMAIIELV 159
BLAST of mRNA_Ecto-sp8_S_contig10183.301.1 vs. uniprot
Match: A0A7S4HPH3_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HPH3_9STRA) HSP 1 Score: 184 bits (467), Expect = 1.820e-56 Identity = 105/174 (60.34%), Postives = 126/174 (72.41%), Query Frame = 1
Query: 22 VACLVALIAQASSFMIGPGAGAAATIRAQRQGAAVSGFTGCNPVCQRDATTDRSALRMMRHRKGFKKLNLPADQRKALLRGLTTQIIRHGRITTTMVRAKAVRKRVDHMITLSKNGSLHARRQAMGYIYDKQLVHALFESGAERYGERPGGYTRIIRTTPRKGDNAKMAIIELV 543
+A A++A AS+F +G A +A ++ GAAVS T C A R + MMRHRK KL PADQRKALLR LTT++IRHGRI TT+VRAKAVRK VDHMI L K G LHARRQA+G++YDK LVH+LFE+ ERY +R GGYTR++RT PR+GDNAKMAIIELV
Sbjct: 4 LAIFAAMVAGASAFGVGAPAFSA---KSSFAGAAVSEST-----CV--ARETRGDMSMMRHRKKVAKLGKPADQRKALLRALTTEVIRHGRIKTTLVRAKAVRKHVDHMIQLGKRGDLHARRQALGWMYDKDLVHSLFEAAPERYSDREGGYTRVLRTMPRQGDNAKMAIIELV 167 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10183.301.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig10183.301.1 >prot_Ecto-sp8_S_contig10183.301.1 ID=prot_Ecto-sp8_S_contig10183.301.1|Name=mRNA_Ecto-sp8_S_contig10183.301.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=182bp MARTFALVACLVALIAQASSFMIGPGAGAAATIRAQRQGAAVSGFTGCNPback to top mRNA from alignment at Ecto-sp8_S_contig10183:397..3682- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp8_S_contig10183.301.1 ID=mRNA_Ecto-sp8_S_contig10183.301.1|Name=mRNA_Ecto-sp8_S_contig10183.301.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=3286bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10183:397..3682- (Ectocarpus species8 EcLAC_412)back to top Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10183:397..3682- >mRNA_Ecto-sp8_S_contig10183.301.1 ID=mRNA_Ecto-sp8_S_contig10183.301.1|Name=mRNA_Ecto-sp8_S_contig10183.301.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=546bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10183:397..3682- (Ectocarpus species8 EcLAC_412)back to top |