mRNA_Ecto-sp8_S_contig101763.292.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig101763.292.1
Unique NamemRNA_Ecto-sp8_S_contig101763.292.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
[Close]
BLAST of mRNA_Ecto-sp8_S_contig101763.292.1 vs. uniprot
Match: A0A6H5KS17_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS17_9PHAE)

HSP 1 Score: 132 bits (333), Expect = 1.490e-36
Identity = 63/65 (96.92%), Postives = 65/65 (100.00%), Query Frame = 1 
Query:    1 TASADFSARLWDAVTGNQVHEFVHKHIVKTVHFAADRSKLATAGHEGILRIFDTASPGSPPTEVS 195
            TASADFSARLWDAVTGNQVHEFVHKHIVKTVHFAADRSKLATAGHEGILRIFDTASPGSPPTE++
Sbjct:   35 TASADFSARLWDAVTGNQVHEFVHKHIVKTVHFAADRSKLATAGHEGILRIFDTASPGSPPTEIT 99
[Close]
BLAST of mRNA_Ecto-sp8_S_contig101763.292.1 vs. uniprot
Match: D8LST9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LST9_ECTSI)

HSP 1 Score: 132 bits (333), Expect = 2.050e-36
Identity = 63/65 (96.92%), Postives = 65/65 (100.00%), Query Frame = 1 
Query:    1 TASADFSARLWDAVTGNQVHEFVHKHIVKTVHFAADRSKLATAGHEGILRIFDTASPGSPPTEVS 195
            TASADFSARLWDAVTGNQVHEFVHKHIVKTVHFAADRSKLATAGHEGILRIFDTASPGSPPTE++
Sbjct:   81 TASADFSARLWDAVTGNQVHEFVHKHIVKTVHFAADRSKLATAGHEGILRIFDTASPGSPPTEIT 145
[Close]
BLAST of mRNA_Ecto-sp8_S_contig101763.292.1 vs. uniprot
Match: A0A7S2XYA9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYA9_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 2.870e-19
Identity = 38/65 (58.46%), Postives = 52/65 (80.00%), Query Frame = 1 
Query:    1 TASADFSARLWDAVTGNQVHEFVHKHIVKTVHFAADRSKLATAGHEGILRIFDTASPGSPPTEVS 195
            TAS DFSA+LW+A++G ++H+FVH+HIVKTV FA DRSKL + G EG+LRIFD + P + P + +
Sbjct:   78 TASGDFSAKLWNAISGEEMHQFVHRHIVKTVEFAPDRSKLISGGQEGLLRIFDLSRPEADPDQAN 142
[Close]
BLAST of mRNA_Ecto-sp8_S_contig101763.292.1 vs. uniprot
Match: A0A835YS18_9STRA (WD40-repeat protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS18_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 5.450e-18
Identity = 39/65 (60.00%), Postives = 47/65 (72.31%), Query Frame = 1 
Query:    1 TASADFSARLWDAVTGNQVHEFVHKHIVKTVHFAADRSKLATAGHEGILRIFDTASPGSPPTEVS 195
            TASADFSARLWDA++G   HE+ HKHIVK V F+ D + LAT GHEGI+R+F  A P   P + S
Sbjct:   82 TASADFSARLWDAISGKLTHEWPHKHIVKGVDFSQDSTTLATGGHEGIVRLFQVAQPDEEPRQFS 146
[Close]
BLAST of mRNA_Ecto-sp8_S_contig101763.292.1 vs. uniprot
Match: A0A7S2LD36_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LD36_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 2.110e-17
Identity = 36/61 (59.02%), Postives = 45/61 (73.77%), Query Frame = 1 
Query:    1 TASADFSARLWDAVTGNQVHEFVHKHIVKTVHFAADRSKLATAGHEGILRIFDTASPGSPP 183
            TAS DFS ++WDA+TG  +H F HKH+VKTV ++ D  +LAT GHEGILRIFD + P   P
Sbjct:   99 TASGDFSVQVWDAITGQSLHSFPHKHVVKTVDWSLDSKRLATGGHEGILRIFDMSQPKKEP 159
[Close]
BLAST of mRNA_Ecto-sp8_S_contig101763.292.1 vs. uniprot
Match: A0A2G8LM42_STIJA (Putative serine-threonine kinase receptor-associated protein-like n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8LM42_STIJA)

HSP 1 Score: 79.0 bits (193), Expect = 2.420e-17
Identity = 36/62 (58.06%), Postives = 44/62 (70.97%), Query Frame = 1 
Query:    1 TASADFSARLWDAVTGNQVHEFVHKHIVKTVHFAADRSKLATAGHEGILRIFDTASPGSPPT 186
            T +ADFSA+LWD V+G Q+HEF HKHIVK V F+ D + L T  +E ILRIFD   P + PT
Sbjct:   44 TGAADFSAKLWDTVSGEQLHEFTHKHIVKAVEFSPDSNHLLTGSNEKILRIFDLQRPDAEPT 105
[Close]
BLAST of mRNA_Ecto-sp8_S_contig101763.292.1 vs. uniprot
Match: C1MI91_MICPC (Predicted protein n=2 Tax=Micromonas pusilla TaxID=38833 RepID=C1MI91_MICPC)

HSP 1 Score: 82.0 bits (201), Expect = 4.920e-17
Identity = 39/71 (54.93%), Postives = 53/71 (74.65%), Query Frame = 1 
Query:    1 TASADFSARLWDAVTGNQVHEFVHKHIVKTVHFAADRSKLATAGHEGILRIFDTASPGSPPTEVSKTIRQV 213
            TASADFSARLW+A+TG+++H F HKHIVK+V F+ D  KL T G E +LRI+D A+  +PP E+  +  Q+
Sbjct:   73 TASADFSARLWNAITGDELHCFAHKHIVKSVCFSQDCQKLLTGGSEKLLRIYDLANIDAPPYEMQGSPSQI 143
[Close]
BLAST of mRNA_Ecto-sp8_S_contig101763.292.1 vs. uniprot
Match: UPI000900C34F (serine-threonine kinase receptor-associated protein-like n=1 Tax=Ipomoea nil TaxID=35883 RepID=UPI000900C34F)

HSP 1 Score: 82.0 bits (201), Expect = 7.770e-17
Identity = 40/73 (54.79%), Postives = 52/73 (71.23%), Query Frame = 1 
Query:    1 TASADFSARLWDAVTGNQVHEFVHKHIVKTVHFAADRSKLATAGHEGILRIFDTASPGSPPTEV--SKTIRQV 213
            +ASADFSA+LWDA+TG+++H F HKHIV+   F+ D   L T GHE ILRIFD   P +PP ++  S T+R V
Sbjct:   77 SASADFSAKLWDALTGDELHSFDHKHIVRACAFSDDTHHLLTGGHEKILRIFDLNRPDAPPRKIDSSGTVRTV 149
[Close]
BLAST of mRNA_Ecto-sp8_S_contig101763.292.1 vs. uniprot
Match: A0A7S1TAR1_9CHLO (Hypothetical protein n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1TAR1_9CHLO)

HSP 1 Score: 81.6 bits (200), Expect = 8.110e-17
Identity = 35/65 (53.85%), Postives = 49/65 (75.38%), Query Frame = 1 
Query:    1 TASADFSARLWDAVTGNQVHEFVHKHIVKTVHFAADRSKLATAGHEGILRIFDTASPGSPPTEVS 195
            TASADFS R+WDA++G+++H+F HKHIV+T  FA+D  +L T G E ILR+FD   P + P E++
Sbjct:   80 TASADFSMRVWDALSGDELHQFQHKHIVRTTQFASDNYRLLTGGQEKILRVFDVNQPDAAPVEMT 144
[Close]
BLAST of mRNA_Ecto-sp8_S_contig101763.292.1 vs. uniprot
Match: UPI001BB197FD (serine-threonine kinase receptor-associated protein-like n=1 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB197FD)

HSP 1 Score: 81.3 bits (199), Expect = 1.350e-16
Identity = 37/61 (60.66%), Postives = 49/61 (80.33%), Query Frame = 1 
Query:    1 TASADFSARLWDAVTGNQVHEFVHKHIVKTVHFAADRSKLATAGHEGILRIFDTASPGSPP 183
            TA+ADFSA++WDAV+G  +H+F HKHIVK+V F+AD SKL TA +E +LRIFD  +P + P
Sbjct:   79 TAAADFSAKVWDAVSGEALHDFSHKHIVKSVDFSADNSKLLTASNEKLLRIFDLNAPEAEP 139
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig101763.292.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KS17_9PHAE1.490e-3696.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LST9_ECTSI2.050e-3696.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2XYA9_9STRA2.870e-1958.46Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A835YS18_9STRA5.450e-1860.00WD40-repeat protein n=1 Tax=Tribonema minus TaxID=... [more]
A0A7S2LD36_9STRA2.110e-1759.02Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A2G8LM42_STIJA2.420e-1758.06Putative serine-threonine kinase receptor-associat... [more]
C1MI91_MICPC4.920e-1754.93Predicted protein n=2 Tax=Micromonas pusilla TaxID... [more]
UPI000900C34F7.770e-1754.79serine-threonine kinase receptor-associated protei... [more]
A0A7S1TAR1_9CHLO8.110e-1753.85Hypothetical protein n=1 Tax=Tetraselmis chuii Tax... [more]
UPI001BB197FD1.350e-1660.66serine-threonine kinase receptor-associated protei... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig101763contigEcto-sp8_S_contig101763:31..243 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score132.5
Seed ortholog evalue7.8e-29
Seed eggNOG ortholog2880.D8LST9
Preferred nameSTRAP
Model size213
KEGG koko:K13137
KEGG Pathwayko03013,map03013
KEGG ModuleM00426
Hectar predicted targeting categoryother localisation
GOsGO:0000122,GO:0000375,GO:0000377,GO:0000387,GO:0000398,GO:0001894,GO:0001932,GO:0001933,GO:0002009,GO:0002165,GO:0003008,GO:0003674,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006139,GO:0006355,GO:0006357,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0007275,GO:0007444,GO:0007472,GO:0007476,GO:0007552,GO:0007560,GO:0007586,GO:0008150,GO:0008152,GO:0008285,GO:0008380,GO:0009653,GO:0009791,GO:0009886,GO:0009887,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009966,GO:0009968,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010563,GO:0010605,GO:0010629,GO:0010632,GO:0010633,GO:0010646,GO:0010648,GO:0010669,GO:0010717,GO:0010719,GO:0016043,GO:0016070,GO:0016071,GO:0017015,GO:0019219,GO:0019220,GO:0019222,GO:0022600,GO:0022607,GO:0022613,GO:0022618,GO:0023051,GO:0023057,GO:0030277,GO:0030334,GO:0030336,GO:0030512,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031399,GO:0031400,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032797,GO:0032879,GO:0032991,GO:0034622,GO:0034641,GO:0034719,GO:0035107,GO:0035114,GO:0035120,GO:0035220,GO:0035239,GO:0035295,GO:0040012,GO:0040013,GO:0042127,GO:0042325,GO:0042326,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045595,GO:0045596,GO:0045892,GO:0045934,GO:0045936,GO:0046483,GO:0048513,GO:0048519,GO:0048523,GO:0048563,GO:0048569,GO:0048583,GO:0048585,GO:0048707,GO:0048729,GO:0048731,GO:0048736,GO:0048737,GO:0048856,GO:0048871,GO:0050678,GO:0050680,GO:0050789,GO:0050793,GO:0050794,GO:0051093,GO:0051171,GO:0051172,GO:0051174,GO:0051239,GO:0051241,GO:0051246,GO:0051248,GO:0051252,GO:0051253,GO:0051270,GO:0051271,GO:0060249,GO:0060255,GO:0060393,GO:0060394,GO:0060429,GO:0060562,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090092,GO:0090101,GO:0090287,GO:0090288,GO:0090304,GO:0120114,GO:1901360,GO:1902679,GO:1903506,GO:1903507,GO:1903844,GO:1903845,GO:2000026,GO:2000112,GO:2000113,GO:2000145,GO:2000146,GO:2001141
Exons1
EggNOG free text desc.negative regulation of transforming growth factor beta receptor signaling pathway
EggNOG OGsKOG0278@1,KOG0278@2759
Ec32 ortholog descriptionWD40 repeat
Ec32 orthologEc-15_002630.1
Cds size213
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143115.6305845-CDS-Ecto-sp8_S_contig101763:30..2431681143115.6305845-CDS-Ecto-sp8_S_contig101763:30..243Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig101763 31..243 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig101763.292.1prot_Ecto-sp8_S_contig101763.292.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig101763 31..243 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig101763.292.1

>prot_Ecto-sp8_S_contig101763.292.1 ID=prot_Ecto-sp8_S_contig101763.292.1|Name=mRNA_Ecto-sp8_S_contig101763.292.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=71bp
TASADFSARLWDAVTGNQVHEFVHKHIVKTVHFAADRSKLATAGHEGILR
IFDTASPGSPPTEVSKTIRQV
back to top

mRNA from alignment at Ecto-sp8_S_contig101763:31..243+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig101763.292.1 ID=mRNA_Ecto-sp8_S_contig101763.292.1|Name=mRNA_Ecto-sp8_S_contig101763.292.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=213bp|location=Sequence derived from alignment at Ecto-sp8_S_contig101763:31..243+ (Ectocarpus species8 EcLAC_412)
ACAGCGTCCGCGGATTTTTCGGCTCGGTTGTGGGACGCCGTCACCGGGAA
TCAGGTCCACGAGTTCGTCCACAAACACATCGTCAAGACGGTGCACTTCG
CCGCAGACAGGTCGAAGCTGGCCACGGCCGGACACGAGGGCATCCTCAGG
ATCTTCGACACAGCGTCCCCCGGAAGCCCTCCAACCGAGGTTAGTAAAAC
TATTAGGCAGGTT
back to top

Coding sequence (CDS) from alignment at Ecto-sp8_S_contig101763:31..243+

>mRNA_Ecto-sp8_S_contig101763.292.1 ID=mRNA_Ecto-sp8_S_contig101763.292.1|Name=mRNA_Ecto-sp8_S_contig101763.292.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=213bp|location=Sequence derived from alignment at Ecto-sp8_S_contig101763:31..243+ (Ectocarpus species8 EcLAC_412)
ACAGCGTCCGCGGATTTTTCGGCTCGGTTGTGGGACGCCGTCACCGGGAA
TCAGGTCCACGAGTTCGTCCACAAACACATCGTCAAGACGGTGCACTTCG
CCGCAGACAGGTCGAAGCTGGCCACGGCCGGACACGAGGGCATCCTCAGG
ATCTTCGACACAGCGTCCCCCGGAAGCCCTCCAACCGAGGTTAGTAAAAC
TATTAGGCAGGTT
back to top