mRNA_Ecto-sp8_S_contig10174.289.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10174.289.1
Unique NamemRNA_Ecto-sp8_S_contig10174.289.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10174.289.1 vs. uniprot
Match: D8LDI6_ECTSI (Glycolate Oxidase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDI6_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 3.200e-24
Identity = 48/50 (96.00%), Postives = 49/50 (98.00%), Query Frame = 1 
Query:   22 LSQVVAAVSGRCEIYLDGGICRGTDVFKALALGAKAVFIGRPVLWGLAHS 171
            L +VVAAVSGRCEIYLDGGICRGTDVFKALALGAKAVFIGRPVLWGLAHS
Sbjct:  299 LPEVVAAVSGRCEIYLDGGICRGTDVFKALALGAKAVFIGRPVLWGLAHS 348
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BLAST of mRNA_Ecto-sp8_S_contig10174.289.1 vs. uniprot
Match: Q9SMD8_9PHAE (Glycolate oxidase (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q9SMD8_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 1.720e-23
Identity = 44/50 (88.00%), Postives = 47/50 (94.00%), Query Frame = 1 
Query:   22 LSQVVAAVSGRCEIYLDGGICRGTDVFKALALGAKAVFIGRPVLWGLAHS 171
            L +VV AVSGRCE+YLDGGICRGTDVFKA+ALGAKAVFIGRPVLWGL HS
Sbjct:  144 LPEVVQAVSGRCEVYLDGGICRGTDVFKAIALGAKAVFIGRPVLWGLGHS 193
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BLAST of mRNA_Ecto-sp8_S_contig10174.289.1 vs. uniprot
Match: W7UBQ6_9STRA (Peroxisomal glycolate oxidase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7UBQ6_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 2.200e-21
Identity = 41/50 (82.00%), Postives = 46/50 (92.00%), Query Frame = 1 
Query:   22 LSQVVAAVSGRCEIYLDGGICRGTDVFKALALGAKAVFIGRPVLWGLAHS 171
            L  +V AV+GRCE+YLDGG+CRGTD FKALALGA+AVFIGRPVLWGLAHS
Sbjct:  295 LPDIVKAVNGRCEVYLDGGVCRGTDAFKALALGARAVFIGRPVLWGLAHS 344
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BLAST of mRNA_Ecto-sp8_S_contig10174.289.1 vs. uniprot
Match: A0A7S2V919_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V919_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 1.820e-20
Identity = 42/50 (84.00%), Postives = 46/50 (92.00%), Query Frame = 1 
Query:   22 LSQVVAAVSGRCEIYLDGGICRGTDVFKALALGAKAVFIGRPVLWGLAHS 171
            L +VV AV+G CE+Y+DGGI RGTDVFKALALGAKAVFIGRPVLWGLAHS
Sbjct:  243 LPEVVRAVNGACEVYVDGGILRGTDVFKALALGAKAVFIGRPVLWGLAHS 292
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BLAST of mRNA_Ecto-sp8_S_contig10174.289.1 vs. uniprot
Match: A0A8K1CFA4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CFA4_PYTOL)

HSP 1 Score: 90.9 bits (224), Expect = 3.750e-20
Identity = 42/51 (82.35%), Postives = 47/51 (92.16%), Query Frame = 1 
Query:   19 SLSQVVAAVSGRCEIYLDGGICRGTDVFKALALGAKAVFIGRPVLWGLAHS 171
            +L ++VAAV GR E+YLDGGI RGTDVFKALALGA+AVFIGRPVLWGLAHS
Sbjct:  280 ALPEIVAAVKGRAEVYLDGGIRRGTDVFKALALGARAVFIGRPVLWGLAHS 330
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BLAST of mRNA_Ecto-sp8_S_contig10174.289.1 vs. uniprot
Match: B7Q8N6_IXOSC ((S)-2-hydroxy-acid oxidase, putative (Fragment) n=1 Tax=Ixodes scapularis TaxID=6945 RepID=B7Q8N6_IXOSC)

HSP 1 Score: 84.0 bits (206), Expect = 6.030e-20
Identity = 37/56 (66.07%), Postives = 47/56 (83.93%), Query Frame = 1 
Query:   22 LSQVVAAVSGRCEIYLDGGICRGTDVFKALALGAKAVFIGRPVLWGLAHSVSKTHN 189
            L ++V AV GR E+Y+DGG+ RGTDV KAL+LGAKAVF+GRP LWGLA++V +T N
Sbjct:    4 LPEIVRAVRGRVEVYVDGGVRRGTDVVKALSLGAKAVFVGRPALWGLAYNVRQTQN 59
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BLAST of mRNA_Ecto-sp8_S_contig10174.289.1 vs. uniprot
Match: UPI001900A9C2 (hydroxyacid oxidase 1-like n=1 Tax=Salvelinus namaycush TaxID=8040 RepID=UPI001900A9C2)

HSP 1 Score: 86.3 bits (212), Expect = 8.120e-20
Identity = 39/48 (81.25%), Postives = 45/48 (93.75%), Query Frame = 1 
Query:   22 LSQVVAAVSGRCEIYLDGGICRGTDVFKALALGAKAVFIGRPVLWGLA 165
            LS+VV+AV+GRCE+YLDGG+ RGTDV KALALGA AVF+GRPVLWGLA
Sbjct:   93 LSEVVSAVAGRCEVYLDGGVRRGTDVLKALALGATAVFLGRPVLWGLA 140
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BLAST of mRNA_Ecto-sp8_S_contig10174.289.1 vs. uniprot
Match: A0A5D6XYT0_9STRA (FMN hydroxy acid dehydrogenase domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XYT0_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 9.840e-20
Identity = 40/51 (78.43%), Postives = 47/51 (92.16%), Query Frame = 1 
Query:   19 SLSQVVAAVSGRCEIYLDGGICRGTDVFKALALGAKAVFIGRPVLWGLAHS 171
            +L ++VAAV GR E+YLDGG+ RGTDVFKALALGA+AVF+GRPVLWGLAHS
Sbjct:  280 ALPEIVAAVGGRAEVYLDGGVRRGTDVFKALALGARAVFLGRPVLWGLAHS 330
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10174.289.1 vs. uniprot
Match: A0A836CMB2_9STRA (Glycolate oxidase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMB2_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 1.160e-19
Identity = 40/51 (78.43%), Postives = 48/51 (94.12%), Query Frame = 1 
Query:   19 SLSQVVAAVSGRCEIYLDGGICRGTDVFKALALGAKAVFIGRPVLWGLAHS 171
            +L +VVAAV+G+ E+YLDGG+ RGTDVFKALA+GA+AVFIGRPVLWGLAHS
Sbjct:  299 ALPEVVAAVAGKVEVYLDGGVTRGTDVFKALAMGARAVFIGRPVLWGLAHS 349
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10174.289.1 vs. uniprot
Match: K3X2I6_GLOUD (FMN hydroxy acid dehydrogenase domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X2I6_GLOUD)

HSP 1 Score: 89.4 bits (220), Expect = 1.360e-19
Identity = 39/51 (76.47%), Postives = 48/51 (94.12%), Query Frame = 1 
Query:   19 SLSQVVAAVSGRCEIYLDGGICRGTDVFKALALGAKAVFIGRPVLWGLAHS 171
            +L ++VAAV+GR E+YLDGG+ RGTDVFKALALGA+AVF+GRPVLWGL+HS
Sbjct:  280 ALPEIVAAVNGRAEVYLDGGVRRGTDVFKALALGARAVFVGRPVLWGLSHS 330
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10174.289.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDI6_ECTSI3.200e-2496.00Glycolate Oxidase n=2 Tax=Ectocarpus TaxID=2879 Re... [more]
Q9SMD8_9PHAE1.720e-2388.00Glycolate oxidase (Fragment) n=1 Tax=Laminaria dig... [more]
W7UBQ6_9STRA2.200e-2182.00Peroxisomal glycolate oxidase n=2 Tax=Monodopsidac... [more]
A0A7S2V919_9STRA1.820e-2084.00Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A8K1CFA4_PYTOL3.750e-2082.35Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
B7Q8N6_IXOSC6.030e-2066.07(S)-2-hydroxy-acid oxidase, putative (Fragment) n=... [more]
UPI001900A9C28.120e-2081.25hydroxyacid oxidase 1-like n=1 Tax=Salvelinus nama... [more]
A0A5D6XYT0_9STRA9.840e-2078.43FMN hydroxy acid dehydrogenase domain-containing p... [more]
A0A836CMB2_9STRA1.160e-1978.43Glycolate oxidase n=1 Tax=Tribonema minus TaxID=30... [more]
K3X2I6_GLOUD1.360e-1976.47FMN hydroxy acid dehydrogenase domain-containing p... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10174contigEcto-sp8_S_contig10174:5575..5763 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score89.7
Seed ortholog evalue5.1e-16
Seed eggNOG ortholog65071.PYU1_T011435
Preferred nameGOX
Model size189
KEGG rclassRC00042
KEGG koko:K11517,ko:K13344
KEGG TC3.A.20.1
KEGG ReactionR00475
KEGG Pathwayko00630,ko01100,ko01110,ko01120,ko01130,ko01200,ko04146,map00630,map01100,map01110,map01120,map01130,map01200,map04146
KEGG ModuleM00532
Hectar predicted targeting categorysignal peptide
GOsGO:0002218,GO:0002253,GO:0002376,GO:0002682,GO:0002684,GO:0003674,GO:0003824,GO:0003973,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005777,GO:0005829,GO:0005840,GO:0005911,GO:0006950,GO:0006952,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008891,GO:0009058,GO:0009506,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009605,GO:0009607,GO:0009617,GO:0009719,GO:0009725,GO:0009735,GO:0009853,GO:0009987,GO:0010033,GO:0010109,GO:0010204,GO:0016020,GO:0016032,GO:0016491,GO:0016614,GO:0016899,GO:0016999,GO:0017000,GO:0017144,GO:0019048,GO:0019222,GO:0022626,GO:0023052,GO:0030054,GO:0031323,GO:0031347,GO:0031349,GO:0032991,GO:0035821,GO:0042221,GO:0042579,GO:0042742,GO:0042743,GO:0043094,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044003,GO:0044237,GO:0044249,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045088,GO:0045089,GO:0048046,GO:0048518,GO:0048583,GO:0048584,GO:0050665,GO:0050776,GO:0050778,GO:0050789,GO:0050794,GO:0050896,GO:0051186,GO:0051188,GO:0051701,GO:0051704,GO:0051707,GO:0051716,GO:0051817,GO:0055044,GO:0055114,GO:0065007,GO:0072593,GO:0080134,GO:0098542,GO:1903409,GO:1990904
Exons1
EggNOG free text desc.Peroxisomal (S)-2-hydroxy-acid oxidase. Source PGD
EggNOG OGs1MD1U@121069,COG1304@1,KOG0538@2759
EC1.1.3.15
Cds size189
COG Functional cat.C
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143115.4235244-CDS-Ecto-sp8_S_contig10174:5574..57631681143115.4235244-CDS-Ecto-sp8_S_contig10174:5574..5763Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10174 5575..5763 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10174.289.1prot_Ecto-sp8_S_contig10174.289.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10174 5575..5763 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10174.289.1

>prot_Ecto-sp8_S_contig10174.289.1 ID=prot_Ecto-sp8_S_contig10174.289.1|Name=mRNA_Ecto-sp8_S_contig10174.289.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=63bp
MILCLFSLSQVVAAVSGRCEIYLDGGICRGTDVFKALALGAKAVFIGRPV
LWGLAHSVSKTHN
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mRNA from alignment at Ecto-sp8_S_contig10174:5575..5763-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10174.289.1 ID=mRNA_Ecto-sp8_S_contig10174.289.1|Name=mRNA_Ecto-sp8_S_contig10174.289.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=189bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10174:5575..5763- (Ectocarpus species8 EcLAC_412)
ATGATACTGTGCCTCTTTTCTTTGTCGCAGGTGGTTGCGGCGGTGAGCGG
TCGGTGTGAGATCTACCTGGACGGAGGCATCTGCCGGGGCACGGACGTGT
TCAAGGCGCTCGCTCTCGGTGCCAAGGCTGTCTTCATCGGGCGACCGGTT
CTCTGGGGTCTCGCGCACAGCGTAAGTAAAACACACAAC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10174:5575..5763-

>mRNA_Ecto-sp8_S_contig10174.289.1 ID=mRNA_Ecto-sp8_S_contig10174.289.1|Name=mRNA_Ecto-sp8_S_contig10174.289.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=189bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10174:5575..5763- (Ectocarpus species8 EcLAC_412)
ATGATACTGTGCCTCTTTTCTTTGTCGCAGGTGGTTGCGGCGGTGAGCGG
TCGGTGTGAGATCTACCTGGACGGAGGCATCTGCCGGGGCACGGACGTGT
TCAAGGCGCTCGCTCTCGGTGCCAAGGCTGTCTTCATCGGGCGACCGGTT
CTCTGGGGTCTCGCGCACAGCGTAAGTAAAACACACAAC
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