mRNA_Ecto-sp8_S_contig1017.284.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig1017.284.1
Unique NamemRNA_Ecto-sp8_S_contig1017.284.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig1017.284.1 vs. uniprot
Match: D7G4X3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4X3_ECTSI)

HSP 1 Score: 214 bits (546), Expect = 2.410e-58
Identity = 104/113 (92.04%), Postives = 108/113 (95.58%), Query Frame = 1 
Query:  763 VYIEGIGGNVVMLDSSNDGGTLLLGDSFSDEVEPADYTSVAISPNGTIFYGLNQGTGDLFQHARTPDGDLGSVVCSVATAEPDAYNRLLPSPDGNHIFVADGERLLTFEVRGQ 1101
            VYIEG+ GNVVMLDSSN+GGTLLLG+SFSDEVEPADYTSVAISPNGTIFYGLNQ TGDLFQHARTPDGDLGSV+CSVAT EPDAYNRLLPSPDGNHIFVADGERLLTFEV  Q
Sbjct:    9 VYIEGLSGNVVMLDSSNNGGTLLLGNSFSDEVEPADYTSVAISPNGTIFYGLNQATGDLFQHARTPDGDLGSVICSVATGEPDAYNRLLPSPDGNHIFVADGERLLTFEVGDQ 121
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BLAST of mRNA_Ecto-sp8_S_contig1017.284.1 vs. uniprot
Match: D7FLQ2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLQ2_ECTSI)

HSP 1 Score: 127 bits (320), Expect = 3.610e-33
Identity = 64/70 (91.43%), Postives = 65/70 (92.86%), Query Frame = 1 
Query:  763 VYIEGIGGNVVMLDSSNDGGTLLLGDSFSDEVEPADYTSVAISPNGTIFYGLNQGTGDLFQHARTPDGDL 972
            VYIEG  GNVVML+S NDGGTLLLGDSFSDEVE ADYTSVAISPNGTIFYGLNQ TGDLFQHARTPDGDL
Sbjct:    9 VYIEGWTGNVVMLNSYNDGGTLLLGDSFSDEVEAADYTSVAISPNGTIFYGLNQATGDLFQHARTPDGDL 78
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig1017.284.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G4X3_ECTSI2.410e-5892.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FLQ2_ECTSI3.610e-3391.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig1017contigEcto-sp8_S_contig1017:5104..10095 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score215.7
Seed ortholog evalue3.6e-53
Seed eggNOG ortholog2880.D7G4X3
Model size1107
Hectar predicted targeting categorysignal peptide
Exons11
EggNOG free text desc.detection of mechanical stimulus
EggNOG OGsKOG3599@1,KOG3599@2759
Cds size1107
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig1017.284.1prot_Ecto-sp8_S_contig1017.284.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig1017 5104..10095 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143115.0631325-CDS-Ecto-sp8_S_contig1017:5103..51541681143115.0631325-CDS-Ecto-sp8_S_contig1017:5103..5154Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1017 5104..5154 -
1681143115.072636-CDS-Ecto-sp8_S_contig1017:5668..57531681143115.072636-CDS-Ecto-sp8_S_contig1017:5668..5753Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1017 5669..5753 -
1681143115.0805542-CDS-Ecto-sp8_S_contig1017:5900..59681681143115.0805542-CDS-Ecto-sp8_S_contig1017:5900..5968Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1017 5901..5968 -
1681143115.0908344-CDS-Ecto-sp8_S_contig1017:6659..68001681143115.0908344-CDS-Ecto-sp8_S_contig1017:6659..6800Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1017 6660..6800 -
1681143115.1018746-CDS-Ecto-sp8_S_contig1017:7032..71851681143115.1018746-CDS-Ecto-sp8_S_contig1017:7032..7185Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1017 7033..7185 -
1681143115.109708-CDS-Ecto-sp8_S_contig1017:7440..75661681143115.109708-CDS-Ecto-sp8_S_contig1017:7440..7566Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1017 7441..7566 -
1681143115.1172118-CDS-Ecto-sp8_S_contig1017:7890..79661681143115.1172118-CDS-Ecto-sp8_S_contig1017:7890..7966Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1017 7891..7966 -
1681143115.1247404-CDS-Ecto-sp8_S_contig1017:8539..85741681143115.1247404-CDS-Ecto-sp8_S_contig1017:8539..8574Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1017 8540..8574 -
1681143115.1319678-CDS-Ecto-sp8_S_contig1017:9107..92991681143115.1319678-CDS-Ecto-sp8_S_contig1017:9107..9299Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1017 9108..9299 -
1681143115.1395016-CDS-Ecto-sp8_S_contig1017:9720..98021681143115.1395016-CDS-Ecto-sp8_S_contig1017:9720..9802Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1017 9721..9802 -
1681143115.1484833-CDS-Ecto-sp8_S_contig1017:9997..100951681143115.1484833-CDS-Ecto-sp8_S_contig1017:9997..10095Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig1017 9998..10095 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig1017.284.1

>prot_Ecto-sp8_S_contig1017.284.1 ID=prot_Ecto-sp8_S_contig1017.284.1|Name=mRNA_Ecto-sp8_S_contig1017.284.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=369bp
MMTGTARLLGYRGATALLFTYGWTARLAAAQCTFSNATSSVLTGGNTPYD
RLAITPDGLTLISTSIDEGPDPVYAFRSFNVNPNGQLTLVSEYIYDSQDD
SLYASPVTTSLDGINVYIILPILSKIYSFETSDISSDINQDDIGASADFL
YLGMTSSDTLLVAVDGGEIYRFERKSNGHLQYFDQVSEAAITAATADPTG
DYVVLASSYRVVKVFNVGASVGQDELTGSIQSVSKILTKIFKPSYIAVSP
TSVGVYIEGIGGNVVMLDSSNDGGTLLLGDSFSDEVEPADYTSVAISPNG
TIFYGLNQGTGDLFQHARTPDGDLGSVVCSVATAEPDAYNRLLPSPDGNH
IFVADGERLLTFEVRGQV*
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mRNA from alignment at Ecto-sp8_S_contig1017:5104..10095-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig1017.284.1 ID=mRNA_Ecto-sp8_S_contig1017.284.1|Name=mRNA_Ecto-sp8_S_contig1017.284.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=4992bp|location=Sequence derived from alignment at Ecto-sp8_S_contig1017:5104..10095- (Ectocarpus species8 EcLAC_412)
ATGATGACAGGGACAGCACGGCTACTTGGTTACCGCGGGGCCACTGCACT
GTTGTTTACCTATGGATGGACGGCAAGGCTGGCGGCGGCGCAATGCACGT
GAGCAATACAGAGGTTATGTACATATATGACACGTATGCATGCGCTGCTA
TTCAGTAGTCTACAGAAAGCATTTCTACGCTAAGAATAGGACTGCCTATC
CCTATCGTATGTAGTCTTCAAACGGAATCAATCACGTTCCCCAACTGTCC
TGTCCGTGCCCACATATCTCCGTTGCGTTGATCAATTGAATAGGTTCTCC
AATGCAACTTCTTCGGTGTTAACAGGAGGCAACACTCCGTACGACAGGCT
TGCCATCACACCGGATGGCCTTACGGTACGAATGCGTGAGGGGAGGAAAC
CTCTGTCGATGCACAAGAACAGCGAGAGCGAGACGCAGTCATCACTCATT
TTTTTTATCCCGGCATGTCTACCCAACCAGAAGGGAGTAGCGATACCATA
CCGTCAAAAATGTGGGCTGAAAATATCGTTCGTGTTGAAACTCGTTCGTT
GGGTCTCAAACAAATTTGCCTTGATGTAAGGTGCAGCTGTGGGCTCGTAA
TGCATACTTTTCTCCATATAATGTAGGTTGTCTGGATGAACAGGCAACAT
CGACCTCAACAACCCGGTAGCGTCAACTCCTTACCGCTAACCTCTCGGTG
CCATTCGGGAAACGGTATCGCCGTTGCCATAACACCTCGAATACAGAGAC
AAGGCTATTTCAGGCTGCATGTTCCCCCCACGCGTCATCACTGCAGCTGA
TATCAACGTCAATCGATGAAGGGCCTGATCCGGTCTACGCTTTCAGAAGC
TTCAACGTCAACCCCAACGGCCAGCTCACTCTCGTCAGCGAATACATCTA
CGACTCGCAAGACGACTCCTTGTATGCGTCTCCTGTCACAACAAGCCTCG
ATGGAATCAACGTATACATCATTTTGCCAATCCTGTCGGTGAGTACGGCC
CGGTGACCTGCGGGTACATTTTAAACCTTGAAGTCATCAACTCTTTTTTT
CTCCACCTGCGTCAGGAAGTATCTGACTAGATGTCGCTGTTGCTGACCTT
AACTAGCAAGGGTTGTTGACTCCCTTCATAACCCTCTCAGGCTACAGGAA
TGGTCATTTTCAACTTACTGCGAGATTAGGGCTGAACTGGCGAATCAGGC
AGGAGTGGGCAGTTAGAACTTGAGAACCGACACGGTAAATTAAGGTTTCT
GGTGAATACCCAAGCATCGTATCGATCTACTGCTGTATGTACCAACGCAT
GCTGTGGGGGCGTTAGAGACTGACGTTCAACCCGACTGTGTAGACTCTTC
CCCCCTCAAGCTCAGGAAGCTCTCCAAGACTATCGCATCCTCCCCCCTCT
CGTTTTGGTTTCCGTCCAATCCAACGTGCCCGGACAACGCGGCCGGCGCA
ATGAACGTTTGAACGGGAATCATCACGACCGGGGTGTGTTGGCCGTTGCC
CCCCGCTGCTCCCGCTTCAAGAAAATATATTCGTTCGAAACATCGGATAT
CTCCAGGTCAGTAGCTTGGGGCACATCTGGGTACATACGTAGAGCGTGTC
ACGTCGGAGAGTCGATTCGGTCCCCGAAAGTTCTTGATATTGTACTTCGC
ACGGGCACACGACGTGTGAAGCATTTGGGTCGATTCATGGTAGGAGCAGT
TTGCGCGACGCACATTGGGCATAGCTTTTGATCCGTGGTACTTCAAGTAG
GAAACTATATTGAGGCCAAAATTGTCATTATCAAACGGGGCAGGGGCCTC
TTGCTAGCATGCACGGTGCGTGCGCTCGCCAACCATCGAGATTATAGAAC
TCGCGAAGCTAATACGCGACACGAGGAAAAATAACGCCCAATGTTCTTGC
GAAGGACTCATCGACCGTACACATCCCTAGGCCTTCAAAATGCCTTGTTT
CTGATTCGACAGTGGACAACGTTCCGTGCGGTCATTTCTTGAGGCGCTCT
TCCGGTATTTTCACTGCAACAACATCAGCGAGGCCAATTGCAGCACCACC
GCACACAGCAAAAAACAAGCACTAACTCTACGTATCTTGTACTACCAAAC
CCACCCGTTATTTTTTGTTCCTCGGCTAGTGACATCAACCAGGACGACAT
AGGAGCAAGTGCCGACTTCCTCTACCTGGGCATGACATCCAGCGATACTC
TACTTGTGAGTGGCGCGGAATGAGCTGTACAATACTACGCAGCGGCCCTA
TGCTGAATGACGTTCTCCTACCGATGCATGCGTGAACGGTCGTCTGGGTT
GCTGTCTGTAGCCATCGCAGGACACGGTTGGCCATTGCCTGTCATGCCCA
TGCAACGCACAAACAGTTAACCCGTGTTTGAAGCAGGTCATGCGACCACA
GTTGTGTCGTTTTGATTAGCTTCTTGCGAAAACGAAGGCACTCTCTACAG
TAGTCCAGCCATTGAACAGATGGGAAGTATTCAACATTTGTTGAAGTTGA
TGGCTGTCCGTGTTTCGACCATACTCCAGGTTGCCGTGGACGGAGGCGAA
ATTTACCGATTCGAGCGCAAGAGCAACGGGCATCTGCAATATTTTGATCA
AGTATCCGAGGCTGCCATTACCGCCGCCACTGCCGATCCGACAGGGGACT
ACGTGGTATAGATTGCATGACTGCTGTGCTATGTTTAGTTTGTTGTTCAC
GCACTTCCGGATATGAATCCTGGTGTTCTTCCTGCTCAGTGGACTGGTAG
GTCGCTGGCATTCGTGGTAGTTCGAAGGCCTACTGTACACGGGATCGTTG
GGTGTCTGGACAGGTGAATCCGGGCTCAGCGAAACGATGCATGCCCTACC
CCTACAAGCAGCTGGGTATGTTGTGTTGATCGTATCCTGGTCGTGCGCTC
GCCGATGCAGGTACTCGCGTCGTCGTACCGGGTCGTGAAGGTATTCAACG
TCGGCGCTAGCGTGGGTCAAGATGAACTGACCGGGTCCATCCAATCGGTC
AGCAAGATCCTGACCAAGATATTTAAGCCTTCGTACATCGCGGTGTCGCC
GACCTCTGTAGGGGTGAGGGTCCAAGGATGAGTTCCTCCTTTTGACGTTC
AGGCAGAGATTGGCGGGGTGATGTCGGGTTCTCACAGGCTTTCGCTAGGA
ATCGTTCCGTTCGTCACCAGCTGACCATTGGTAAAATGGCTTGACCCGCG
GTCTTAGTTGGCACTTTTTTCATTTGATTTATCTTCTCGGCACCTCCACT
GTCTATTCATTTTTGTCATGACCACCACCTTGCTCACCCACCCAGGTCTA
TATTGAGGGGATCGGCGGTAACGTCGTGATGTTGGACAGCTCGAATGACG
GCGGCACGCTACTGCTCGGGGATTCGTTCAGCGACGAAGTTGAGCCTGCG
GACTACACGTCTGTCGCAATCAGCCCGAACGGCACGGTAAGAAGGGACCT
GTTTGGACCCCCCCTTCTTCTCCTTGGGTAAGGCTTTGCTGTCTTCAGCA
CACACCTAACTTTGCATCAGTGGCTACATACGTTCGGGCGAGGGTACGTG
TGGAGCTATGATGATAGTGTAGTATGTGATGCTGTTTTGTAGGACGCGTC
TATGTTGCTGCTGGGTAGTGTAGCTGCTTACTACATGGTGACTGCTGGAT
CTTGGGAGTGTACGATTACATATTTAGAGATGCAGCATACCATGATATCC
TGGCTTTTGGCTGGACTTGAAATACTCCTTTTCCAGCCCTCCGCTCTCTG
CATCAGTGGCTTCCTAGATTCGGGCGAGGTCATGTAGCGCGGAGATGTGA
TGTCAGTCTCTGTGAATGTATGTATTAGAGAGACTCATTTTGGCAATCGC
ATATGGCGCATTGTGCATTTTTCAAATGTTGGCACCCTTTCAAGGACCTT
GATTTTGCCCGCTGGTACTGAAGTGTTGTCATTGGTGACCGGATATCGCG
ATCGATGCCAACACCAGCATCTGTCAACTCCTGGCGTGGAGGGAGACAGG
GAGGCAACTCAAGTCTTGCCGCCACACCAACATCCGAACATGGTCTATTA
ATGATCTGACAGTACGCCTGAAGACTGGTGTCTGTGTACTCCTTGTTGGA
TGCCTCTCTGCATAACCTTCTGTGCAGATCTTTTACGGGCTTAACCAAGG
CACTGGGGATCTGTTCCAGCACGCTAGGACTCCGGATGGTGACCTGTGAG
TGGGAAATTTGCATCCAGCACGTCTGACATTTGTCTAGGGATTTGGTGTC
CAGCACTGCTGCACCCCCAACACTAGCACGTTTCTCCGATTGACTGTGAC
CTTTTCCTTTTCCACCCCGTTCCGTTGACGGGGTTTATGCAGTGGGTCCG
TGGTATGCAGCGTCGCCACAGCCGAACCGGACGCGTATAACAGATTGCTG
CCGTCACCGGATGGAAACCACATTTTCGTGAGTGACGCATGAAATATTTT
CGGCGTATCATTTTCGAGTCTTGTGGGAATCTTCGAGCACCCTTCCCATG
TGGAGGTGCCCGGGAATCAACTAGCCCCCTACATGACATAACGACACGTT
TGACGGCATGACGGTGAAACCGGGAAGCAATGCAACCAACGACTGCAGAA
AACACACAAACGTACAGTAGGGGCAATCGTTGGAGCTACCTACCATTCCA
CCTTTAGGTGCCTGCCGTGGCGGTTCATACATGTGGAGTGTGTCTTGTTC
CAGTTCTGCACAGCGCGTGTTCTGATGCATTGTCACTCTTCTCTAGCCGT
CAAGGTCCCATTTTTCTCATATGAAGGCCGTCTCGGCAGTATGGGTCTGA
CACATCGTCCGTTGTGGTCGATGGCTTGTTGATCGGTCTCCTGAAACGCC
ACCGATGTTTGGAACTGTTGAAGTTGGTGTTTTTTCTGCCGGCCCAAAAC
TTTTGAATCACTCATATCTCATGCCTTCCATGTCCTATCAGGTGGCTGAT
GGAGAACGGCTGCTCACGTTCGAAGTTCGTGGCCAGGTATAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig1017:5104..10095-

>mRNA_Ecto-sp8_S_contig1017.284.1 ID=mRNA_Ecto-sp8_S_contig1017.284.1|Name=mRNA_Ecto-sp8_S_contig1017.284.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=1107bp|location=Sequence derived from alignment at Ecto-sp8_S_contig1017:5104..10095- (Ectocarpus species8 EcLAC_412)
ATGATGACAGGGACAGCACGGCTACTTGGTTACCGCGGGGCCACTGCACT
GTTGTTTACCTATGGATGGACGGCAAGGCTGGCGGCGGCGCAATGCACGT
TCTCCAATGCAACTTCTTCGGTGTTAACAGGAGGCAACACTCCGTACGAC
AGGCTTGCCATCACACCGGATGGCCTTACGCTGATATCAACGTCAATCGA
TGAAGGGCCTGATCCGGTCTACGCTTTCAGAAGCTTCAACGTCAACCCCA
ACGGCCAGCTCACTCTCGTCAGCGAATACATCTACGACTCGCAAGACGAC
TCCTTGTATGCGTCTCCTGTCACAACAAGCCTCGATGGAATCAACGTATA
CATCATTTTGCCAATCCTGTCGAAAATATATTCGTTCGAAACATCGGATA
TCTCCAGTGACATCAACCAGGACGACATAGGAGCAAGTGCCGACTTCCTC
TACCTGGGCATGACATCCAGCGATACTCTACTTGTTGCCGTGGACGGAGG
CGAAATTTACCGATTCGAGCGCAAGAGCAACGGGCATCTGCAATATTTTG
ATCAAGTATCCGAGGCTGCCATTACCGCCGCCACTGCCGATCCGACAGGG
GACTACGTGGTACTCGCGTCGTCGTACCGGGTCGTGAAGGTATTCAACGT
CGGCGCTAGCGTGGGTCAAGATGAACTGACCGGGTCCATCCAATCGGTCA
GCAAGATCCTGACCAAGATATTTAAGCCTTCGTACATCGCGGTGTCGCCG
ACCTCTGTAGGGGTCTATATTGAGGGGATCGGCGGTAACGTCGTGATGTT
GGACAGCTCGAATGACGGCGGCACGCTACTGCTCGGGGATTCGTTCAGCG
ACGAAGTTGAGCCTGCGGACTACACGTCTGTCGCAATCAGCCCGAACGGC
ACGATCTTTTACGGGCTTAACCAAGGCACTGGGGATCTGTTCCAGCACGC
TAGGACTCCGGATGGTGACCTTGGGTCCGTGGTATGCAGCGTCGCCACAG
CCGAACCGGACGCGTATAACAGATTGCTGCCGTCACCGGATGGAAACCAC
ATTTTCGTGGCTGATGGAGAACGGCTGCTCACGTTCGAAGTTCGTGGCCA
GGTATAG
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