mRNA_Ecto-sp8_S_contig10169.281.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10169.281.1
Unique NamemRNA_Ecto-sp8_S_contig10169.281.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig10169.281.1 vs. uniprot
Match: D7FWD2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWD2_ECTSI)

HSP 1 Score: 368 bits (944), Expect = 1.440e-125
Identity = 199/220 (90.45%), Postives = 200/220 (90.91%), Query Frame = 1 
Query:    1 MFFDLNVPVLRSSVERDRSALLSQLFEHGYDCVALNTIIYGRLPKQHRCTVERIHFDPEAASAVGSRXXXXXXTFREPSLLRATARGGGAAVPGHGATAESGPDQVSRLTVVLESPADAQSLTAGSEALQSYDVVAAVPCCQRSFEVLCKDSDVDVISLPSGKRLPFNINKKNTDAALSRGAVFEVTYSQAIQNSSNRRFLLSNCGALVTFTRGRGILLA 660
            MFFDLNVPVLRSSVERDRSALLSQLFEHGYDCVALNTIIYGRLPKQHRCTVERIHFDPEAASAVGSRXXXXXX                 A PGHGATA SGPDQVSRLTVVLESPADAQSLTAGSEALQSYDVVAAVPCCQRSFEVLCKDSDVDVISLPSGKRLPFNINKKNTDAALSRGAVFEV+YSQAIQNSSNRRFLLSNC ALVTFTRGRGILLA
Sbjct:    1 MFFDLNVPVLRSSVERDRSALLSQLFEHGYDCVALNTIIYGRLPKQHRCTVERIHFDPEAASAVGSRXXXXXXXXXXXXXXXXXXXXXXXAAPGHGATAASGPDQVSRLTVVLESPADAQSLTAGSEALQSYDVVAAVPCCQRSFEVLCKDSDVDVISLPSGKRLPFNINKKNTDAALSRGAVFEVSYSQAIQNSSNRRFLLSNCEALVTFTRGRGILLA 220
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BLAST of mRNA_Ecto-sp8_S_contig10169.281.1 vs. uniprot
Match: A0A1S3XHS6_TOBAC (uncharacterized protein LOC107765292 n=5 Tax=Nicotiana TaxID=4085 RepID=A0A1S3XHS6_TOBAC)

HSP 1 Score: 111 bits (278), Expect = 1.210e-24
Identity = 74/233 (31.76%), Postives = 113/233 (48.50%), Query Frame = 1 
Query:    4 FFDLNVPVLRS--------SVERDRSALLSQLFEHGYDCVALNTIIYGRLPKQHRCTVER------IHFDPEAASAVGSRXXXXXXTFREPSLLRATARGGGAAVPGHGATAESGPDQVSRLTVVLESPADAQSLTAGSEALQSYDVVAAVPCCQRSFEVLCKDSDVDVISLPSGKRLPFNINKKNTDAALSRGAVFEVTYSQAIQNSSNRRFLLSNCGALVTFTRGRGILLA 660
            FFDLN+P   S        +++  R  L  +  E GY  +A N  I G + +  RC++        +   P  AS+V  R          P                          Q +RLTV+++S A A +L +G+  L+SYDVVA  P  Q +FE  C+ S+VD+I++   ++LPF + +    AA+ RG  FE+TYS  I +S  RR ++SN   LV +TRG+ +L +
Sbjct:    3 FFDLNIPYYESDRNITNKTALKATRLKLTIKAMELGYTGIAYNRTIKGVMSESDRCSIPLFPVSSILKLAPSLASSVEFRRKLLNVPVSSPFR------------------------QYTRLTVMVDSSAQASALNSGNPILKSYDVVAVRPLNQLAFEQACQVSEVDIIAIDFSEKLPFRLKQSMVKAAIQRGVYFEITYSSLILDSQMRRQMISNAKLLVDWTRGKNLLFS 211
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BLAST of mRNA_Ecto-sp8_S_contig10169.281.1 vs. uniprot
Match: A0A068UKY2_COFCA (Uncharacterized protein n=3 Tax=Coffea TaxID=13442 RepID=A0A068UKY2_COFCA)

HSP 1 Score: 110 bits (275), Expect = 2.950e-24
Identity = 71/233 (30.47%), Postives = 113/233 (48.50%), Query Frame = 1 
Query:    4 FFDLNVPVLRS--------SVERDRSALLSQLFEHGYDCVALNTIIYGRLPKQHRCTVERIHFD------PEAASAVGSRXXXXXXTFREPSLLRATARGGGAAVPGHGATAESGPDQVSRLTVVLESPADAQSLTAGSEALQSYDVVAAVPCCQRSFEVLCKDSDVDVISLPSGKRLPFNINKKNTDAALSRGAVFEVTYSQAIQNSSNRRFLLSNCGALVTFTRGRGILLA 660
            FFDLN+P   S        + + +R  L+ +  E GY  VA N +I G + +  RC+             P  +S+V             P                          Q SRLTVV++ PA A +L +G+  ++SYD+VA  P  Q +FE  C+ S+VD+I++   ++LPF + +    AA+ RG  FE++YS  I ++  RR  +SNC  LV +TRG+ ++++
Sbjct:    3 FFDLNIPYHESDRHVTETTTYKSNRLKLVIKAAELGYTGVAYNRVIKGVMSESDRCSTSLFPLSSLLKHAPSFSSSVKFHRDLLNVPVSTPFR------------------------QYSRLTVVIDCPAQAAALNSGNPVIKSYDIVAVRPINQNAFEQACQTSEVDIIAIDFSEKLPFRLKQSMVKAAVKRGVYFEISYSSLIVDAQVRRQTISNCKLLVDWTRGKNLVIS 211
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BLAST of mRNA_Ecto-sp8_S_contig10169.281.1 vs. uniprot
Match: A0A7C9ES22_OPUST (Uncharacterized protein (Fragment) n=2 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9ES22_OPUST)

HSP 1 Score: 106 bits (265), Expect = 1.300e-23
Identity = 68/227 (29.96%), Postives = 117/227 (51.54%), Query Frame = 1 
Query:    4 FFDLNVPVL--------RSSVERDRSALLSQLFEHGYDCVALNTIIYGRLPKQHRCTVERIHFDPEAASAVGSRXXXXXXTFREPSLLRATARGGGAAVPGHGATAESGPDQVSRLTVVLESPADAQSLTAGSEALQSYDVVAAVPCCQRSFEVLCKDSDVDVISLPSGKRLPFNINKKNTDAALSRGAVFEVTYSQAIQNSSNRRFLLSNCGALVTFTRGRGILLA 660
            FFDLN+P L        +S+ +++R  L+ +  E GY  +A N  I G + +  RC++      P ++    +       +F    L               G    +   Q +RLTV++E+ A A +L +G+  L+SYD+VA  P  Q  F+  C+ S V++IS+   ++LPF +      AA++RG  FE+TYS  +++   RR L++N   LV +TRG+ ++++
Sbjct:   27 FFDLNIPYLEGDKSIPDKSAKKQNRLRLIIKAMELGYAGIAYNRTIKGAMSESDRCSIPPF---PLSSLLNAAPSLSFAVSFHRRLL---------------GVPPTAPFRQYTRLTVIVETSAQASALNSGNPVLKSYDLVAVRPLNQNCFDHACQSSQVELISINFAEKLPFRLKLPMVKAAIARGVTFEITYSSLMEDVQARRQLIANAKLLVEWTRGKNLIIS 235
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BLAST of mRNA_Ecto-sp8_S_contig10169.281.1 vs. uniprot
Match: A0A7S2WPG3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WPG3_9STRA)

HSP 1 Score: 105 bits (261), Expect = 1.430e-23
Identity = 71/199 (35.68%), Postives = 105/199 (52.76%), Query Frame = 1 
Query:   64 LSQLFEHGYDCVALNTIIYGRLPKQHRCTVERIHFDPEAASAVGSRXXXXXXTFREPSLLRATARGGGAAVPGHGATAESGPDQVSRLTVVLESPADAQSLTAGSEALQSYDVVAAVPCCQRSFEVLCKDSDVDVISLPSGKRLPFNINKKNTDAALSRGAVFEVTYSQAIQNSSNRRFLLSNCGALVTFTRGRGILLA 660
            L  L E GY  VA   IIYG+L K   C ++   +  E A+  GS           PS  +    GGG  +             ++RLT+V E P D  S+ +   A ++Y+VVA  P  QR++E+ C+   VDV+SL   +RL F+I +K  DAAL +GA FE+ Y QA+++ S  RFL+S    L   TRG+ ++++
Sbjct:   33 LETLLESGYTTVAATRIIYGKLKKTDGCDIDPRRWMEELAT--GSAQSTTCLPILGPSAAQV---GGGLTL-------------LTRLTLVPEEPDDVPSIQSHKIA-ETYNVVAIQPTSQRTWELACEQHGVDVVSLDCTQRLRFHITRKQVDAALEKGAKFELLYGQAMKDPSAFRFLVSTARQLTHLTRGKHVIMS 212
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BLAST of mRNA_Ecto-sp8_S_contig10169.281.1 vs. uniprot
Match: A0A484N9S6_9ASTE (Uncharacterized protein n=2 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484N9S6_9ASTE)

HSP 1 Score: 107 bits (267), Expect = 3.330e-23
Identity = 74/232 (31.90%), Postives = 110/232 (47.41%), Query Frame = 1 
Query:    4 FFDLNVPVLRS--------SVERDRSALLSQLFEHGYDCVALNTIIYGRLPKQHRCTVER------IHFDPEAASAVGSRXXXXXXTFREPSLLRATARGGGAAVPGHGATAESGPDQVSRLTVVLESPADAQSLTAGSEALQSYDVVAAVPCCQRSFEVLCKDSDVDVISLPSGKRLPFNINKKNTDAALSRGAVFEVTYSQAIQNSSNRRFLLSNCGALVTFTRGRGILL 657
            FFDLN+P L S        S +  R  LL +  E GY  VA N  I G + +  RC++        +   P  +SAV             P                          Q +RLTV+++SPA A  L +G+   +SYDVVA +P  Q +F+  C+ S VDVI++   +++ F + +    AA+ RG  FE+TYS  + ++  RR ++ N   LV +TRGR I+L
Sbjct:    3 FFDLNIPYLESDRLVIDKKSAKSMRLKLLIKAMELGYTGVAYNRTIKGVMSELDRCSIPPFPLSSILKLSPSISSAVKLHRDLLTVPVSAPFR------------------------QYTRLTVMVDSPAQASVLNSGNPITKSYDVVAVMPLNQNAFDQACQISQVDVITIDFSQKMLFRLKQPMVKAAVQRGIYFEITYSSLLTDAQARRQMIPNAKLLVDWTRGRNIIL 210
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BLAST of mRNA_Ecto-sp8_S_contig10169.281.1 vs. uniprot
Match: UPI00125DC9EE (uncharacterized protein LOC116003716 n=3 Tax=Ipomoea TaxID=4119 RepID=UPI00125DC9EE)

HSP 1 Score: 107 bits (267), Expect = 3.520e-23
Identity = 71/232 (30.60%), Postives = 111/232 (47.84%), Query Frame = 1 
Query:    4 FFDLNVPVLRS--------SVERDRSALLSQLFEHGYDCVALNTIIYGRLPKQHRCTVER------IHFDPEAASAVGSRXXXXXXTFREPSLLRATARGGGAAVPGHGATAESGPDQVSRLTVVLESPADAQSLTAGSEALQSYDVVAAVPCCQRSFEVLCKDSDVDVISLPSGKRLPFNINKKNTDAALSRGAVFEVTYSQAIQNSSNRRFLLSNCGALVTFTRGRGILL 657
            +FDLN+P   S        +V+  R  L+ +  E GY  VA N  I G + +  RC++        +   P  +SAV             P                          Q +RLTV+++SPA A  L  G+  L+SYD+VA  P  Q +F+  C+ S+VD+I++   ++L F + +    AA+ RG  FE+TYS  + ++  RR ++SN   LV +TRG+ I+L
Sbjct:    3 YFDLNIPYFESDRHVANKNTVKAMRLKLIIKAMELGYTGVAYNRTIKGVMSESDRCSIPLFPLSSILKLAPSISSAVKLHRDLLSVPVSAPFR------------------------QYTRLTVMVDSPAQASVLNVGNPVLKSYDIVAVRPLNQNAFDHACRTSEVDIITIDFSEKLLFRLKQPMVQAAIQRGVYFEITYSSLLIDAQARRQMISNAKLLVDWTRGKNIIL 210
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BLAST of mRNA_Ecto-sp8_S_contig10169.281.1 vs. uniprot
Match: A0A834HUK1_RHOSS (Uncharacterized protein n=2 Tax=Rhododendron TaxID=4346 RepID=A0A834HUK1_RHOSS)

HSP 1 Score: 105 bits (263), Expect = 1.190e-22
Identity = 75/234 (32.05%), Postives = 116/234 (49.57%), Query Frame = 1 
Query:    1 MFFDLNVPVLRSSVE-RDRSA-------LLSQLFEHGYDCVALNTIIYGRLPKQHRCTVER------IHFDPEAASAVGSRXXXXXXTFREPSLLRATARGGGAAVPGHGATAESGPDQVSRLTVVLESPADAQSLTAGSEALQSYDVVAAVPCCQRSFEVLCKDSDVDVISLPSGKRLPFNINKKNTDAALSRGAVFEVTYSQAIQNSSNRRFLLSNCGALVTFTRGRGILLA 660
            +FFDLN+P   S     D+SA       L  +  E GY  VA N  I G + +  RC   +      +   P  +SAV                L     G  A+ P           Q +RLTV ++S A A +L +G+  L++YDVVA  P  Q +FE  CK S+VD+I++   ++LPF + ++    A+  G  FE+TYS+ I ++  RR ++SN   LV +TRG+ ++++
Sbjct:    2 VFFDLNIPYHESDKHVPDKSARKTTRLKLAVKAMELGYTGVAYNRTIKGVMSEHDRCATPKFPLSSVLKLAPSLSSAV---------------KLHRHVLGVPASAPFR---------QYTRLTVAVDSSAQAAALNSGNPILKTYDVVAVKPLSQNAFEQACKASEVDLIAIDFSEKLPFRLKQRLVKDAIEHGVYFEITYSRLIMDAQVRRQMISNAKLLVDWTRGKNLIIS 211
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10169.281.1 vs. uniprot
Match: UPI000B8B0995 (ribonuclease P protein subunit p30 isoform X1 n=2 Tax=Spinacia oleracea TaxID=3562 RepID=UPI000B8B0995)

HSP 1 Score: 103 bits (256), Expect = 1.410e-22
Identity = 69/232 (29.74%), Postives = 114/232 (49.14%), Query Frame = 1 
Query:    7 FDLNVPVL--------RSSVERDRSALLSQLFEHGYDCVALNTIIYGRLPKQHRCTVER------IHFDPEAASAVGSRXXXXXXTFREPSLLRATARGGGAAVPGHGATAESGPDQVSRLTVVLESPADAQSLTAGSEALQSYDVVAAVPCCQRSFEVLCKDSDVDVISLPSGKRLPFNINKKNTDAALSRGAVFEVTYSQAIQNSSNRRFLLSNCGALVTFTRGRGILLA 660
            FDLN+P          +SS ++ R  L+ +  E GY  +A N  I G + +  RCT+        +   P  +S V          F    L               G    S   Q +RLT+++E+ A A +L +G+  L++YD++A  P  Q SF++ C+ S VD+IS+    +LPF +      AA++RG  FE+ YS  +Q+   RR ++SN   LV +T+G+ ++++
Sbjct:    4 FDLNIPYWESDKSVSDKSSKKQTRLKLIVKAIEFGYTGIAYNRTIKGVMSESDRCTISPFSLSSLLKLSPSLSSTV---------CFHRRLL---------------GVPENSAFRQYTRLTMLVETSAQASALNSGNPILKTYDLIAVRPLNQNSFDLACQSSQVDLISIDFADKLPFRLKLPMVKAAIARGVYFEIMYSSLMQDVHVRRQMISNAKLLVEWTQGKNLIVS 211
[Close]
BLAST of mRNA_Ecto-sp8_S_contig10169.281.1 vs. uniprot
Match: A0A1Q3BTW4_CEPFO (RNase_P_p30 domain-containing protein n=1 Tax=Cephalotus follicularis TaxID=3775 RepID=A0A1Q3BTW4_CEPFO)

HSP 1 Score: 105 bits (262), Expect = 1.630e-22
Identity = 71/230 (30.87%), Postives = 109/230 (47.39%), Query Frame = 1 
Query:    4 FFDLNVPVLR-----SSVERDRSALLSQLFEHGYDCVALNTIIYGRLPKQHRCTVERIHFD------PEAASAVGSRXXXXXXTFREPSLLRATARGGGAAVPGHGATAESGPDQVSRLTVVLESPADAQSLTAGSEALQSYDVVAAVPCCQRSFEVLCKDSDVDVISLPSGKRLPFNINKKNTDAALSRGAVFEVTYSQAIQNSSNRRFLLSNCGALVTFTRGRGILLA 660
            FFDLN+P L      S+++  R  L ++  E GY  +A N  I G +    RC++  +         P  +S+V             P                          Q +RLTV ++S A AQ L +G+  L++YD+VA  P  Q +F+  C  ++VD+IS+   ++LPF +      AA+ RG  FEV YS  I +   RR ++SN   LV +TRGR ++L+
Sbjct:    3 FFDLNIPYLETTSSSSALKTTRIKLATKAMEFGYTGIAYNRTIKGVMSDHDRCSISLLSLSSLLSLSPSLSSSVNFHRDLLHIPRSSPFR------------------------QYTRLTVCVDSLAQAQVLNSGNPLLKTYDLVAVRPLNQTAFDHACAKAEVDIISINFSEKLPFRLKLPMVKAAIERGVYFEVAYSDLIADVEVRRQMISNAKLLVDWTRGRNLVLS 208
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10169.281.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWD2_ECTSI1.440e-12590.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A1S3XHS6_TOBAC1.210e-2431.76uncharacterized protein LOC107765292 n=5 Tax=Nicot... [more]
A0A068UKY2_COFCA2.950e-2430.47Uncharacterized protein n=3 Tax=Coffea TaxID=13442... [more]
A0A7C9ES22_OPUST1.300e-2329.96Uncharacterized protein (Fragment) n=2 Tax=Opuntia... [more]
A0A7S2WPG3_9STRA1.430e-2335.68Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A484N9S6_9ASTE3.330e-2331.90Uncharacterized protein n=2 Tax=Cuscuta campestris... [more]
UPI00125DC9EE3.520e-2330.60uncharacterized protein LOC116003716 n=3 Tax=Ipomo... [more]
A0A834HUK1_RHOSS1.190e-2232.05Uncharacterized protein n=2 Tax=Rhododendron TaxID... [more]
UPI000B8B09951.410e-2229.74ribonuclease P protein subunit p30 isoform X1 n=2 ... [more]
A0A1Q3BTW4_CEPFO1.630e-2230.87RNase_P_p30 domain-containing protein n=1 Tax=Ceph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10169contigEcto-sp8_S_contig10169:1793..6856 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score369.4
Seed ortholog evalue1.2e-99
Seed eggNOG ortholog2880.D7FWD2
Preferred nameRPP30
Model size672
KEGG koko:K03539,ko:K07881
KEGG Pathwayko03008,ko03013,ko04152,map03008,map03013,map04152
Hectar predicted targeting categoryother localisation
GOsGO:0000172,GO:0000294,GO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000478,GO:0000479,GO:0000956,GO:0000966,GO:0001682,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004526,GO:0004540,GO:0004549,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005655,GO:0005730,GO:0005732,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006399,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0016070,GO:0016071,GO:0016072,GO:0016074,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0019222,GO:0019439,GO:0022613,GO:0030490,GO:0030677,GO:0030681,GO:0031070,GO:0031974,GO:0031981,GO:0032991,GO:0033967,GO:0034470,GO:0034471,GO:0034641,GO:0034655,GO:0034660,GO:0034963,GO:0034965,GO:0042254,GO:0042274,GO:0043144,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044452,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0099116,GO:0140098,GO:0140101,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1902494,GO:1902555,GO:1905267,GO:1905348,GO:1990904
Exons6
EggNOG free text desc.ribonuclease P activity
EggNOG OGsCOG1603@1,KOG2363@2759
Ec32 ortholog descriptionRNase P subunit p30
Ec32 orthologEc-25_000570.1
EC3.1.26.5
Cds size672
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03009,ko03016,ko03029,ko04031,ko04131,ko04147
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10169.281.1prot_Ecto-sp8_S_contig10169.281.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10169 1793..6856 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143114.824345-CDS-Ecto-sp8_S_contig10169:1792..18741681143114.824345-CDS-Ecto-sp8_S_contig10169:1792..1874Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10169 1793..1874 +
1681143114.8363953-CDS-Ecto-sp8_S_contig10169:2885..29441681143114.8363953-CDS-Ecto-sp8_S_contig10169:2885..2944Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10169 2886..2944 +
1681143114.8473477-CDS-Ecto-sp8_S_contig10169:3487..37121681143114.8473477-CDS-Ecto-sp8_S_contig10169:3487..3712Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10169 3488..3712 +
1681143114.8620353-CDS-Ecto-sp8_S_contig10169:4713..48661681143114.8620353-CDS-Ecto-sp8_S_contig10169:4713..4866Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10169 4714..4866 +
1681143114.8745768-CDS-Ecto-sp8_S_contig10169:5746..58071681143114.8745768-CDS-Ecto-sp8_S_contig10169:5746..5807Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10169 5747..5807 +
1681143114.88272-CDS-Ecto-sp8_S_contig10169:6764..68561681143114.88272-CDS-Ecto-sp8_S_contig10169:6764..6856Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10169 6765..6856 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10169.281.1

>prot_Ecto-sp8_S_contig10169.281.1 ID=prot_Ecto-sp8_S_contig10169.281.1|Name=mRNA_Ecto-sp8_S_contig10169.281.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=224bp
MFFDLNVPVLRSSVERDRSALLSQLFEHGYDCVALNTIIYGRLPKQHRCT
VERIHFDPEAASAVGSRRRRRRRTFREPSLLRATARGGGAAVPGHGATAE
SGPDQVSRLTVVLESPADAQSLTAGSEALQSYDVVAAVPCCQRSFEVLCK
DSDVDVISLPSGKRLPFNINKKNTDAALSRGAVFEVTYSQAIQNSSNRRF
LLSNCGALVTFTRGRGILLARYN*
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mRNA from alignment at Ecto-sp8_S_contig10169:1793..6856+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10169.281.1 ID=mRNA_Ecto-sp8_S_contig10169.281.1|Name=mRNA_Ecto-sp8_S_contig10169.281.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=5064bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10169:1793..6856+ (Ectocarpus species8 EcLAC_412)
ATGTTCTTCGACCTGAACGTCCCTGTACTTCGTTCCTCTGTGGAACGGGA
TCGGAGTGCTCTTTTGTCGCAACTGTTCGAACGTGAGTGTTCTGCAATGC
TCCCCTCTCCCCTCGCTGTCGAACACCGCCCCCACAACCCATTGCAGTAG
TCTCCACTATGCATGTATCTGTTGATATACGTAGATCAATGTATAGATAC
AAGTACACGTGCTTCCACTCTGTTACCTCGCTGTGCCCACTAGTATATGT
GCTAGTCTCGCCGCGCTGGCTGGTGGGTAGTTTGTGCTGTAATAGTCTAC
AGCCAGCACACCAGGGCCGATATTTTGACAGTCTCGGGTACACTGCTTCA
AGAACGTGTGGTCTAAGGCACACCTACCTGCCAACAGCAACACCATTGTC
ATGCGAAAACGAGCCAAAGCCAGCGAAGTTTTCGGCCGAAGCCACGGCCT
CGCCCCCCGAAATTCTGTACTCACGAGCTGCAAGGACAGTGAGGTCTTCT
GTGCTATGTATGCACGCAACGCGTTCGCTGCTTGCTACAGTAGCGGGAGA
CCACCAAACTCACAGCAAAGCAAGCGGAGAGCCGCGCGGTCCACAGCAGT
CTCCACAGCGGACAGTGTAGGTACAGCAGTTATCGCCTCTTTCTCCTGCG
CAATTCGCTTCCTCGCTGAAGTTTGGACCCCCGAGCAACACCATGGTTTC
CTGTTGATTTGCTGTATTGACGGTGGGCTCGCAGCCTCGTAAAAAGTTGC
TGATACAAGTACAACGTAGTACATCGAAGTCTGCCAACTGTAGAGGCCTG
ATGAAACCAAAGACTAGTCAGCGGCTGATTTGTCCAATGTTTTGGTTTTG
GGCTCTATTCAAGTTAATCGTGGGGTACGAATGTTTGATTTCAACTTCTA
TGCGATATACAACCAGTTCAACATGCAAAGGGGCACCATACCAGACGAAC
AGCCGAAAGTCGGCACAGTGCGTACCGAATCGCAGCTGGAGCTTCCGGGG
TTAAACGTGTGATTCACAGCAGAGCGTCTTGATTCATGACGATGCCACTA
CTTCGCCCCCCGTTGTCTGGATTCGATATTTTCTTCGTCCCAGATGGCTA
CGACTGCGTCGCCTTGAACACCATCATCTACGGCCGCCTTCCCAAACAAC
ACGTGAGTGTGGTGGCTTTTTTGACGTTGATGTTGGTGTTAAAGGTTTGT
GCTGACGATGATGATGATGTATGTTGCTGCTGCTGCTGCTGCTGCTGCTA
CTTCTGCTGGCGTGATGCACGCACCTCCCGCTCAGCAAGCTAGTAGATGC
GCATTTGCAGGCGGATGCGAAACATCGGTCCAAGGAGAGCAATCAACACC
TGGGTGCCATCTGACGATTCCGGCCTCTTTTGATGCCGCCTGCTTGTTTG
GCCCAACCCATGTGCCACATTCCCACCGACTCAAGCTTCGATGGGCACAG
AACCAAGGGCAGGCAGACACAAACACACGCCACGCGATGCCGTAACACGC
AGACTGTTCAGCGAACAGCCTACCTGTGGTCGATAGAATCGAAGCTGGTA
CTGACGAAACTGCAATGAGTGCCAACCCGTTGAGCTTTGCCATGTTTTCG
CGAGGCCAACTTAACGCCCCCTCACCCATCTCCCACGTCGCCATCCTTCG
CAACCCACACGAAAACTCCCCCGAATCGTGGCGGGCGGGGGACAGCGGTG
CACTGTCGAGCGCATCCACTTTGACCCCGAAGCGGCATCAGCCGTCGGCA
GCCGCCGCCGAAGGCGAAGAAGAACGTTCCGAGAACCTTCCTTGCTCCGA
GCGACAGCCCGGGGCGGCGGTGCTGCCGTGCCTGGACACGGGGCTACGGC
GGAGAGTGGCCCCGACCAGGTTTCACGCCTCACGGTGGTGCTGGAGAGCC
CGGCGGACGCGCAGTCCCTGGTGAGTTTTTTTGCTTTGTTCTGGTTCGAG
GGGGGCGAGGGAGGGACCGATGGCCTGTCGGTACGGCCCGTCTACACAGG
CGCATAGACTCGCAAAGCGCTCGGGTAGGCTGGTGTGGGGCCGCGGGAAA
TGCTGCCTAGACTAGTCGGTAACCGTTCGGGGGAAATTACCCCGAATGGG
TAGTTTGTCGCACGGCGTTTGGGTGTTCTGGCGCCCTGTCATATCGTCCG
GAGCGGTAGGGAGGCGTTGGCCCGAGGTTCAAACGTGTGTTGCTTTGGGC
AGAAACCCTGAGGGTGGGACGAACGCCTGTCCCGCGAAATGATGGTACTT
GGAAATTTATATTGATGTGTTGCGTCGGAAATCGACAGCAGTCAGTAGCG
AAGTAAGGCTTCGAGAGTGTGGCTTTCTCCTTGAGAGTGTCCGGTGTTGA
GAGTATCAAAAAGCACGCATCGTTTGGATGCTTCCTTGTGCCTCTGGCTG
ACGAGGAGGAACGGTGCGTAATTCTCGGTGTGGCGTGCATGCCGCCTGCG
CAAGGCCGAGAAGTTTCGGTGTTTGAGCCACTCGCCGTTCGCTCGCTTTT
TTAGAGAGTCCGTCTTCTTCGGTGGTGTGGTCGACACAGACGTACGTTTG
GGTGGTTGAGCTAGCCGACAGGTGCCGAGGAAAGGTTGGCTGATGAATGA
ACAGGAGATCACATTCAAAGGGATGGGAATTATATTCATACAGAGCAAAG
CGTGCAAGGCGCGCCAACAGCACAGCCCGCTCGAGCGTTGTCGCGGGATT
TTTTTTGGGGGGGGGGTATTTCCTGGCTTTTTCAAACCCGCACAACAACA
ACCATCGCAGCAACAATAGCAGTATCAGCAAAGACAATCAACGCCATAAA
GAGCAATAGCATCAACAGTAACAGCCGCCAGGTAGCGTAGCAATAGCCAC
AACAAACAACACCATGGACAACGACAACGATAATGACAACGGCAACAATT
ACAACAACAAACGCCAAACAGACGGCCGGAAGCGAGGCCCTTCAGTCGTA
CGACGTGGTGGCTGCCGTGCCCTGCTGCCAGAGGTCCTTCGAGGTCCTCT
GCAAGGACAGCGACGTCGACGTCATCTCCCTTCCCTCCGGCAAGCGCCTT
CCGTTCAACATCAACAAGAAGAATGTGGGTGGTGCAGTTGTTGATGTTGG
TGGTGGAGATTGTTACCGTAAGTCGAATAAAATGTCGCACCCCCTGGACC
GATTCTCAACGCTCGACTTCTCCACGACGAAGAAGATGTCGAAAATGAAG
TAAGTATACGTTTGTTTTCGGAAAGCTCTCGACGAGACGGTTCCAACACC
TAACGCCTTTTTCAGCACCATCACTGCTGTTATTCCTGCCGATATACATG
TATGGAGCTCCGAAAATCGATCCAAGTAGTGTGATATCTTATTGTTGTTG
TTGTTGTTGTTGCTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTC
GTTGTTGTTACCTTCATATGTCCGTACTGATCCAACACTTGACGCGGTCG
ATTCCCGTGGTCACAGGCTAACGTACCCCTTATGCAACCTACGGAATAGA
GAGCGTTCCGTTCAACATGACCAAGCAGAAAGTGGGGGGGTAAAAGGTGG
TGGAATTTATGGCCGTGGTGGTGATTGTCATCGAGCGGGGAAGGGAGGGT
GGTTCCGCTAACCATCGCCAAGAAGAAAGTGGATTGTCGAAGGTGTCGCT
TGTGGTGGTGGTTGTTATAGCGGGGAGGGTGATTTCGGGATTAGGCGCCC
GCAGAGTCAGATGTGGCTGCCCGTAAAAGGGTAGTAGCACGGTAGCATTG
GTGAGTCAGCCTCTGAAAGGGCATGATTGAATCCGCAAAGCACCCTGATT
GTCGATCCGTGTATGTATTGCGTTCACCGCTGAACACTCCACTGCGTCTC
TTTGCTACTGCTACTGCTACTGCTACTGCTACCGCTGCTGCTGCTGCTGT
TGCTGCTGCTGCTGCCTTGGGTGGTCTTCTTCTCGCCTCCTTCCTGGTGC
GCAGACGGATGCAGCGTTGTCTAGGGGAGCCGTGTTCGAGGTTACCTACA
GCCAAGCTATTCAGAGTGAGCAGTAGTACCGTTTGTATCGGATAGTTTGC
ATGTAGGCTCTTGTAGGTGCCGCCGACGCCAATCGCCAGGGGCAAATGAA
GACTGGGCTAGCCTCGCCGAAAAGAAATGGGAACAACCGGGGTCTATTGG
GACTCCAGTTTCGTGTTGTCCCGCTCAAGACTTATGGGTATCTTGTCCCC
CGATCAGCTACGCTTCCTCTTTTGTTGCGCTTTGGTTTGCTCCCGTCCAT
GCGTGTGCTGTTTTTTGTTTTGCCTTTTTCCTTGGGCATTTTGTTGTCGT
CGTTGTGCGGAGGTGCGCCACATGCTGCCGGCCCAACCGGCTGCTACTAT
TGTTGCTGCTACTGTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTTGGCG
TGGTTACTGCTGCGTCCACTGTAAAAGCCTCCGCACCGCGTACAACTCCG
ATGCGTTATTTTCGAGTTTCGGTAGTTGCAGACCTGCAACACGTGCATCG
TTTACGTGCGTGTTTTATTCCCAATTTTTGTGCATTGTTAATCATTAGTT
TGGGGAAGACATGTCCGAGTATGCCCCATACATCGGTCCCTATGTAAGTC
TGTGTCAATGTTGTCACCGCGAGGAAACAGGGAGGCGTTTCTCGAAACCG
CCTCTGCCTCAGGTTCGCACACACGGGGACCCTCCGTCCGGCCATTGTGT
TACGCCAATCAAACTCATGTTTACCTAGGACATTTTTCGTTTACTAATCT
TTTTTTGTTTGGTAAAGATGAGTTTGTACGTCTAAACGGTGCCGTCGTAG
ACGTATTTTGTCTTTCGTTTTCATCCATTTGTCTTCCTTTTGCTACAACG
AGCGTGATGGTTTTTTGCCGGCCCGTCCTTCTTTCCCTCTGCCTCTCGAT
GTCGGTGGACTGTTGTCCCTTTCGGACTCTCTCACCCGCGGGCGGGGTCG
GTGGCGGTTTGCATCGCCGTAGATTCGTCGAATCGGAGATTCCTGCTCTC
AAACTGCGGGGCGCTGGTCACCTTCACGAGGGGTCGAGGAATCCTTCTGG
CGAGGTACAATTAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10169:1793..6856+

>mRNA_Ecto-sp8_S_contig10169.281.1 ID=mRNA_Ecto-sp8_S_contig10169.281.1|Name=mRNA_Ecto-sp8_S_contig10169.281.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=672bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10169:1793..6856+ (Ectocarpus species8 EcLAC_412)
ATGTTCTTCGACCTGAACGTCCCTGTACTTCGTTCCTCTGTGGAACGGGA
TCGGAGTGCTCTTTTGTCGCAACTGTTCGAACATGGCTACGACTGCGTCG
CCTTGAACACCATCATCTACGGCCGCCTTCCCAAACAACACCGGTGCACT
GTCGAGCGCATCCACTTTGACCCCGAAGCGGCATCAGCCGTCGGCAGCCG
CCGCCGAAGGCGAAGAAGAACGTTCCGAGAACCTTCCTTGCTCCGAGCGA
CAGCCCGGGGCGGCGGTGCTGCCGTGCCTGGACACGGGGCTACGGCGGAG
AGTGGCCCCGACCAGGTTTCACGCCTCACGGTGGTGCTGGAGAGCCCGGC
GGACGCGCAGTCCCTGACGGCCGGAAGCGAGGCCCTTCAGTCGTACGACG
TGGTGGCTGCCGTGCCCTGCTGCCAGAGGTCCTTCGAGGTCCTCTGCAAG
GACAGCGACGTCGACGTCATCTCCCTTCCCTCCGGCAAGCGCCTTCCGTT
CAACATCAACAAGAAGAATACGGATGCAGCGTTGTCTAGGGGAGCCGTGT
TCGAGGTTACCTACAGCCAAGCTATTCAGAATTCGTCGAATCGGAGATTC
CTGCTCTCAAACTGCGGGGCGCTGGTCACCTTCACGAGGGGTCGAGGAAT
CCTTCTGGCGAGGTACAATTAG
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