mRNA_Ecto-sp8_S_contig10169.279.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig10169.279.1
Unique NamemRNA_Ecto-sp8_S_contig10169.279.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
BLAST of mRNA_Ecto-sp8_S_contig10169.279.1 vs. uniprot
Match: D7FVG9_ECTSI (Similar to ankyrin 2,3/unc44 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVG9_ECTSI)

HSP 1 Score: 56.6 bits (135), Expect = 1.570e-7
Identity = 30/61 (49.18%), Postives = 39/61 (63.93%), Query Frame = 1
Query:    1 IAKELLTAGADPAKVNFDGWLAIHCAASRGDLVVIQMLLAKAPEAINHFGMNGLTPLGDAA 183
            I +ELL  GADPA V+     A+H AA +G + +I ML AKAP  ++  G +G TPLG AA
Sbjct:  136 IVRELLDGGADPAMVDTYDLTAMHFAAGKGRVELIDMLAAKAPATLHRAGRDGFTPLGKAA 196          
BLAST of mRNA_Ecto-sp8_S_contig10169.279.1 vs. uniprot
Match: T0R1T5_SAPDV (TKL protein kinase n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0R1T5_SAPDV)

HSP 1 Score: 55.8 bits (133), Expect = 3.340e-7
Identity = 33/73 (45.21%), Postives = 46/73 (63.01%), Query Frame = 1
Query:    1 IAKELLTAGADPAKVNFDGWLAIHCAASRGDLVVIQMLLAKAPEAINHFGMNGLTPLGDAAREGHPDAVSFLL 219
            IA+ELL AGA   + + DG   +H AA+ G   V+++LL KAP+A++    +GLT +  AAR GH D V  LL
Sbjct: 2017 IAEELLHAGARLCQ-DLDGNTPLHLAATFGQGSVVELLLTKAPDAVDVANKDGLTAMAIAARNGHTDIVERLL 2088          
BLAST of mRNA_Ecto-sp8_S_contig10169.279.1 vs. uniprot
Match: A0A3M7REX2_BRAPC (Ankyrin repeat-containing (Fragment) n=1 Tax=Brachionus plicatilis TaxID=10195 RepID=A0A3M7REX2_BRAPC)

HSP 1 Score: 54.3 bits (129), Expect = 1.050e-6
Identity = 29/75 (38.67%), Postives = 44/75 (58.67%), Query Frame = 1
Query:   10 ELLTAGADPAKVNFDGWLAIHCAASRGDLVVIQMLLAKAPEAINHFGMNGLTPLGDAAREGHPDAVSFLLANGAS 234
            EL  AG+DP K   DG  A+HCAASRG L  +++L+ +   +++    N  TP+  AA  G  +A + LL  G++
Sbjct:  207 ELFAAGSDPNKHEKDGLTALHCAASRGHLECMKILIEQCKTSVDIMDNNNCTPIFYAATLGQVNACNLLLKYGSN 281          
BLAST of mRNA_Ecto-sp8_S_contig10169.279.1 vs. uniprot
Match: A0A2U1LQL7_ARTAN (Potassium channel n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1LQL7_ARTAN)

HSP 1 Score: 52.0 bits (123), Expect = 7.580e-6
Identity = 32/76 (42.11%), Postives = 43/76 (56.58%), Query Frame = 1
Query:    7 KELLTAGADPAKVNFDGWLAIHCAASRGDLVVIQMLLAKAPEAINHFGMNGLTPLGDAAREGHPDAVSFLLANGAS 234
            K L+ AGADP K NFDG   +H AAS+G     +++  +  E +N     G TPL +A + GH D  S L+  GAS
Sbjct: 1227 KNLIRAGADPNKKNFDGRSPLHLAASKGH-EDCRIVFTEGVE-VNISDRYGNTPLLEAIKSGHDDIASLLIKEGAS 1300          
BLAST of mRNA_Ecto-sp8_S_contig10169.279.1 vs. uniprot
Match: UPI00201E7578 (uncharacterized protein LOC124119968 n=1 Tax=Haliotis rufescens TaxID=6454 RepID=UPI00201E7578)

HSP 1 Score: 50.8 bits (120), Expect = 1.880e-5
Identity = 27/77 (35.06%), Postives = 45/77 (58.44%), Query Frame = 1
Query:    1 IAKELLTAGADPAKVNFDGWLAIHCAASRGDLVVIQMLLAKAPEAINHFGMNGLTPLGDAAREGHPDAVSFLLANGA 231
            + + L++ GAD + V+  G+  +H A   GD+  ++ +L+     IN  G + LTP+ +AA EGH D V  L++ GA
Sbjct:  452 VVELLVSEGADVSLVSDRGYNTLHLACLGGDMETVKYVLSLNVVDINSRGGSSLTPVMEAAEEGHRDVVELLVSEGA 528          
BLAST of mRNA_Ecto-sp8_S_contig10169.279.1 vs. uniprot
Match: A0A556TQS6_BAGYA (Cyclin-L1 n=1 Tax=Bagarius yarrelli TaxID=175774 RepID=A0A556TQS6_BAGYA)

HSP 1 Score: 50.4 bits (119), Expect = 2.630e-5
Identity = 28/76 (36.84%), Postives = 40/76 (52.63%), Query Frame = 1
Query:    7 KELLTAGADPAKVNFDGWLAIHCAASRGDLVVIQMLLAKAPEAINHFGMNGLTPLGDAAREGHPDAVSFLLANGAS 234
            K L+  G     ++  GW AIH AA +G L ++Q LL  +   +N+    G TPL  +   G+ D   +LL NGAS
Sbjct:  167 KGLVDCGVPVDCIDPRGWTAIHLAAFKGHLALLQFLLHASEMDVNYPDFFGCTPLHRSCMGGNKDTAEYLLQNGAS 242          
BLAST of mRNA_Ecto-sp8_S_contig10169.279.1 vs. uniprot
Match: A0A812Q781_9DINO (ANK1 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812Q781_9DINO)

HSP 1 Score: 48.9 bits (115), Expect = 9.260e-5
Identity = 26/56 (46.43%), Postives = 36/56 (64.29%), Query Frame = 1
Query:   67 IHCAASRGDLVVIQMLLAKAPEA-INHFGMNGLTPLGDAAREGHPDAVSFLLANGA 231
            +HCAA++GDL ++ +L+    +A +    M GLTPL  A R+G P AV  LLA GA
Sbjct:  494 LHCAAAKGDLDLLALLVRFVRDAELEVVNMQGLTPLALACRKGQPGAVRMLLAAGA 549          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig10169.279.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FVG9_ECTSI1.570e-749.18Similar to ankyrin 2,3/unc44 n=2 Tax=Ectocarpus Ta... [more]
T0R1T5_SAPDV3.340e-745.21TKL protein kinase n=1 Tax=Saprolegnia diclina (st... [more]
A0A3M7REX2_BRAPC1.050e-638.67Ankyrin repeat-containing (Fragment) n=1 Tax=Brach... [more]
A0A2U1LQL7_ARTAN7.580e-642.11Potassium channel n=1 Tax=Artemisia annua TaxID=35... [more]
UPI00201E75781.880e-535.06uncharacterized protein LOC124119968 n=1 Tax=Halio... [more]
A0A556TQS6_BAGYA2.630e-536.84Cyclin-L1 n=1 Tax=Bagarius yarrelli TaxID=175774 R... [more]
A0A812Q781_9DINO9.260e-546.43ANK1 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=23... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig10169contigEcto-sp8_S_contig10169:605..844 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score71.2
Seed ortholog evalue2.4e-10
Seed eggNOG ortholog2880.D8LMA9
Model size240
KEGG koko:K10380
KEGG Pathwayko04624,ko05205,map04624,map05205
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Cds size240
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143114.7646286-CDS-Ecto-sp8_S_contig10169:604..8441681143114.7646286-CDS-Ecto-sp8_S_contig10169:604..844Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig10169 605..844 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig10169.279.1prot_Ecto-sp8_S_contig10169.279.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig10169 605..844 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig10169.279.1

>prot_Ecto-sp8_S_contig10169.279.1 ID=prot_Ecto-sp8_S_contig10169.279.1|Name=mRNA_Ecto-sp8_S_contig10169.279.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=80bp
IAKELLTAGADPAKVNFDGWLAIHCAASRGDLVVIQMLLAKAPEAINHFG
MNGLTPLGDAAREGHPDAVSFLLANGASDK
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mRNA from alignment at Ecto-sp8_S_contig10169:605..844-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig10169.279.1 ID=mRNA_Ecto-sp8_S_contig10169.279.1|Name=mRNA_Ecto-sp8_S_contig10169.279.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=240bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10169:605..844- (Ectocarpus species8 EcLAC_412)
ATCGCGAAAGAGCTGCTCACGGCGGGCGCCGACCCGGCCAAGGTGAACTT CGACGGCTGGCTCGCGATCCACTGCGCGGCGAGCAGGGGAGACTTGGTCG TCATCCAAATGCTCCTGGCCAAGGCGCCGGAAGCCATCAACCACTTCGGC ATGAACGGCCTCACGCCCTTGGGCGACGCCGCCAGGGAGGGCCACCCGGA CGCCGTCTCCTTCCTGCTGGCCAACGGGGCAAGCGACAAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig10169:605..844-

>mRNA_Ecto-sp8_S_contig10169.279.1 ID=mRNA_Ecto-sp8_S_contig10169.279.1|Name=mRNA_Ecto-sp8_S_contig10169.279.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=240bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10169:605..844- (Ectocarpus species8 EcLAC_412)
ATCGCGAAAGAGCTGCTCACGGCGGGCGCCGACCCGGCCAAGGTGAACTT
CGACGGCTGGCTCGCGATCCACTGCGCGGCGAGCAGGGGAGACTTGGTCG
TCATCCAAATGCTCCTGGCCAAGGCGCCGGAAGCCATCAACCACTTCGGC
ATGAACGGCCTCACGCCCTTGGGCGACGCCGCCAGGGAGGGCCACCCGGA
CGCCGTCTCCTTCCTGCTGGCCAACGGGGCAAGCGACAAG
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