mRNA_Ecto-sp8_S_contig101620.270.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig101620.270.1
Unique NamemRNA_Ecto-sp8_S_contig101620.270.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig101620.270.1 vs. uniprot
Match: D7G6M0_ECTSI (Strictosidine synthase subfamily, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6M0_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 5.930e-17
Identity = 32/33 (96.97%), Postives = 33/33 (100.00%), Query Frame = 1 
Query:    4 GDDGSLYTGTWDGRVYRMDPDGTNPTVIFFTGG 102
            GDDGSLYTGTWDGRVYRMDPDGTNPTV+FFTGG
Sbjct:   72 GDDGSLYTGTWDGRVYRMDPDGTNPTVVFFTGG 104
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BLAST of mRNA_Ecto-sp8_S_contig101620.270.1 vs. uniprot
Match: A0A6H5KHN1_9PHAE (Str_synth domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHN1_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 2.070e-15
Identity = 32/33 (96.97%), Postives = 33/33 (100.00%), Query Frame = 1 
Query:    4 GDDGSLYTGTWDGRVYRMDPDGTNPTVIFFTGG 102
            GDDGSLYTGTWDGRVYRMDPDGTNPTV+FFTGG
Sbjct:   72 GDDGSLYTGTWDGRVYRMDPDGTNPTVVFFTGG 104
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig101620.270.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G6M0_ECTSI5.930e-1796.97Strictosidine synthase subfamily, putative n=1 Tax... [more]
A0A6H5KHN1_9PHAE2.070e-1596.97Str_synth domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig101620contigEcto-sp8_S_contig101620:233..334 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size102
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size102
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143114.203767-CDS-Ecto-sp8_S_contig101620:232..3341681143114.203767-CDS-Ecto-sp8_S_contig101620:232..334Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig101620 233..334 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig101620.270.1prot_Ecto-sp8_S_contig101620.270.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig101620 233..334 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig101620.270.1

>prot_Ecto-sp8_S_contig101620.270.1 ID=prot_Ecto-sp8_S_contig101620.270.1|Name=mRNA_Ecto-sp8_S_contig101620.270.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=34bp
AGDDGSLYTGTWDGRVYRMDPDGTNPTVIFFTGG
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mRNA from alignment at Ecto-sp8_S_contig101620:233..334+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig101620.270.1 ID=mRNA_Ecto-sp8_S_contig101620.270.1|Name=mRNA_Ecto-sp8_S_contig101620.270.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=102bp|location=Sequence derived from alignment at Ecto-sp8_S_contig101620:233..334+ (Ectocarpus species8 EcLAC_412)
GCAGGGGACGATGGCTCCCTGTACACCGGAACATGGGACGGGAGGGTCTA
CCGGATGGACCCCGACGGGACAAATCCCACGGTAATCTTCTTCACGGGAG
GC
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig101620:233..334+

>mRNA_Ecto-sp8_S_contig101620.270.1 ID=mRNA_Ecto-sp8_S_contig101620.270.1|Name=mRNA_Ecto-sp8_S_contig101620.270.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=102bp|location=Sequence derived from alignment at Ecto-sp8_S_contig101620:233..334+ (Ectocarpus species8 EcLAC_412)
GCAGGGGACGATGGCTCCCTGTACACCGGAACATGGGACGGGAGGGTCTA
CCGGATGGACCCCGACGGGACAAATCCCACGGTAATCTTCTTCACGGGAG
GC
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