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Homology
BLAST of mRNA_Ecto-sp8_S_contig10157.258.1 vs. uniprot
Match: D8LMZ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMZ6_ECTSI) HSP 1 Score: 654 bits (1688), Expect = 7.890e-224 Identity = 437/531 (82.30%), Postives = 445/531 (83.80%), Query Frame = 1
Query: 49 ARKDFKIYMNKLLEHSTALETFRPDKHHSDVGDTGSGVPAWGPSLGMSEEGGSVGEARGSPPAGAAVDVTMPPFSPSRYREEKHAWPRAGAVTPPRPRPPPNFSWMAEPGSPASRCRRGGGGVSGGG--ARKSLSSADFASSPAPAAGGPRIEGGRLSEDLGMDDGGRSWGAEEEEG--DADAWKAQWSRRLSRGPIHSEYQDRFPWPPRSAFLGTAGDDAFNDAPPAPHPRGRRAPARGGGSDRRQWGSAVARGRGGSEPPRGRA---------AEGYPRDGGGVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTGRLPGGDLDTAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEQTSGLEVIGHRTSRASSVYDEKEWEAGRGSEADGGWPSRAADVGGSSVAAGATLVGRAGDVAAAEVWRGEAVGRGEVTMMSGGRTLDFSSQQSILTEYMDEYAWPSTLPAPGRRGKRSGMGVDHVGRLLAGRRAEEPARK 1602
ARKDFKIYM+KLLEHSTAL+TFRPDK HSD GDTGSGVPAWGPSLGMSEEGGSVGEARGSPPAGAAVDVTMPPFSPSR+REEKHAWPRAGAVTPPRPRPPPNFSWMAEPGSPASR ARKSLSSAD ASSPAPAAGGPRI+GGRLS DLGMDDGGRSWGAEEEEG DADAWKAQWSRRLSRGPIHSEYQDRFPWPPRSAFLGT DDAFN APP PHPRGRRA ARG G A GYPRDGGGVG XXXXXXXXXXXX AGTGRLPGGDL+ AGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX SEQTSGLEVIGHRTSRASSVYDEKEWEAGRGSEADGGWPSRAADVGGSS+A GATL+G AGDVAAAEVWRGEAVGRGEVT MSGGRTLDFSSQ SILTEYMDEYAWPS+LPAPGRRGKRSGMGVDHVGRLLAGRRAEEPARK
Sbjct: 3 ARKDFKIYMDKLLEHSTALDTFRPDKRHSDAGDTGSGVPAWGPSLGMSEEGGSVGEARGSPPAGAAVDVTMPPFSPSRFREEKHAWPRAGAVTPPRPRPPPNFSWMAEPGSPASRXXXXXXXXXXXXXXARKSLSSADLASSPAPAAGGPRIKGGRLSADLGMDDGGRSWGAEEEEGEEDADAWKAQWSRRLSRGPIHSEYQDRFPWPPRSAFLGTVDDDAFNGAPPPPHPRGRRASARGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGYPRDGGGVGGXXXXXXXXXXXXVDTAAAGRGGEGSPSDGRRAGTGRLPGGDLEMAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSEQTSGLEVIGHRTSRASSVYDEKEWEAGRGSEADGGWPSRAADVGGSSMAGGATLIGSAGDVAAAEVWRGEAVGRGEVTTMSGGRTLDFSSQ-SILTEYMDEYAWPSSLPAPGRRGKRSGMGVDHVGRLLAGRRAEEPARK 532
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 1 |
| Start | 1 |
| Model size | 1605 |
| Hectar predicted targeting category | other localisation |
| Exons | 5 |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-16_001210.1 |
| Cds size | 1605 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681143113.3636432-CDS-Ecto-sp8_S_contig10157:438..588 | 1681143113.3636432-CDS-Ecto-sp8_S_contig10157:438..588 | Ectocarpus species8 EcLAC_412 | CDS | Ecto-sp8_S_contig10157 439..588 - |
| 1681143113.382182-CDS-Ecto-sp8_S_contig10157:1449..2635 | 1681143113.382182-CDS-Ecto-sp8_S_contig10157:1449..2635 | Ectocarpus species8 EcLAC_412 | CDS | Ecto-sp8_S_contig10157 1450..2635 - |
| 1681143113.396577-CDS-Ecto-sp8_S_contig10157:3526..3684 | 1681143113.396577-CDS-Ecto-sp8_S_contig10157:3526..3684 | Ectocarpus species8 EcLAC_412 | CDS | Ecto-sp8_S_contig10157 3527..3684 - |
| 1681143113.4050298-CDS-Ecto-sp8_S_contig10157:4170..4228 | 1681143113.4050298-CDS-Ecto-sp8_S_contig10157:4170..4228 | Ectocarpus species8 EcLAC_412 | CDS | Ecto-sp8_S_contig10157 4171..4228 - |
| 1681143113.413396-CDS-Ecto-sp8_S_contig10157:5663..5716 | 1681143113.413396-CDS-Ecto-sp8_S_contig10157:5663..5716 | Ectocarpus species8 EcLAC_412 | CDS | Ecto-sp8_S_contig10157 5664..5716 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp8_S_contig10157.258.1 >prot_Ecto-sp8_S_contig10157.258.1 ID=prot_Ecto-sp8_S_contig10157.258.1|Name=mRNA_Ecto-sp8_S_contig10157.258.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=535bp
MLSGRAGCSQPHAIEQARKDFKIYMNKLLEHSTALETFRPDKHHSDVGDT GSGVPAWGPSLGMSEEGGSVGEARGSPPAGAAVDVTMPPFSPSRYREEKH AWPRAGAVTPPRPRPPPNFSWMAEPGSPASRCRRGGGGVSGGGARKSLSS ADFASSPAPAAGGPRIEGGRLSEDLGMDDGGRSWGAEEEEGDADAWKAQW SRRLSRGPIHSEYQDRFPWPPRSAFLGTAGDDAFNDAPPAPHPRGRRAPA RGGGSDRRQWGSAVARGRGGSEPPRGRAAEGYPRDGGGVGGEERRRRRPS SSSVDTAAAGRGGEGSPGGGRRAGTGRLPGGDLDTAGGSGGRGGGGGGGG ESGGGAAAVAPFVAGKRGDDRKEGARQQAWRRGGSAVGSPPPSEQTSGLE VIGHRTSRASSVYDEKEWEAGRGSEADGGWPSRAADVGGSSVAAGATLVG RAGDVAAAEVWRGEAVGRGEVTMMSGGRTLDFSSQQSILTEYMDEYAWPS TLPAPGRRGKRSGMGVDHVGRLLAGRRAEEPARK* back to topmRNA from alignment at Ecto-sp8_S_contig10157:439..5716- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp8_S_contig10157.258.1 ID=mRNA_Ecto-sp8_S_contig10157.258.1|Name=mRNA_Ecto-sp8_S_contig10157.258.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=5278bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10157:439..5716- (Ectocarpus species8 EcLAC_412) ATGTTGTCAGGAAGAGCAGGATGTTCCCAACCCCACGCCATCGAGCAAGC
CAGGTACGCGCCAATGGGTACTCGGAAATCATTCCTAACGCTTTTAATTC
CAAACCGTCGGATTGTAACGGGCCCCGGTGTTTACAACGGCAGCAGCAGT
GAATCGCATGATCACCCCTGTACTTCTAAACTATTGTGATCACAGCAGCA
CGATTATCAAGCGTTTACAACCTAGGGCTGGTGTCTATACTCCGGTTACC
GTTCTGTCGGTGGGGAAGTCAGCAATGCCAACAGCACTTGCCGGGACGCA
TATGTATGTAGATTCGAGCAGCGCAGAAGCGAGATCTACGCACAGCGCGC
ATTATTTGAAGTTCTGTTTCGATGAGGGCTGGATCATGCGCCATGCAGGG
CAAATCGAGTTCATGTGCAGGTTAGGGCTGTGAACGCTTACCTTTCTCAT
GTGTGCTGCACGGTGATGATGGGCTCGTCTCCTGTGTTTATTCAGAGAGA
TTGCCTCATACAAAGCAACCGCTGGCAGGAAAACCACCTGCCTAACGGGT
GACGCGAGATATCACCCCCCCCTCCCAAGACCGATCTTCAATGCTCGGCA
TTACTCCTAGAGCGGAAAGAGTGAGTGGCGTTGCCGAAAATGGCGGCGTC
GGAACCGTCTCGTGGAGATGTCTCGGAAGACCTATCATTTGATGTTAGTA
TCCTCTTCGTCGTTGAAGTAGTCGGCCTTTGAAAACCGGGGCAGGGGGTG
TGATATCTTACGTCACCCAGGATGCTCCTACCCCAAGCACATTTACCACA
ACAGCAGTAGTGGTATGTATAGCAGTACGTGGAACGACATCACGGCAGCC
TCTTGTACAGAACTGCGCGCCACGTTTTTAACTCAACCGACGAACAGGTG
CTCAGTCCGGAAGAACACAGTAGTACCCTACGCTAACCTACCAGTACCGG
AACGGTTTTTAACGTGAAGACAACAACAACAACAACAACAACTTCGAGTA
CCAATATCTATTCAGCAGTAGTCCATGTTGGATTACCCCATATTTGGAGG
TCTAATCTCTGGTGCAGACGTTGGAACGTCAATTCGCGTAGAATCAAAAG
TTAAAAGTTTCTTGGCGCATGTGATAACACGTACTTGAAGGCCACCTGGA
GGCAGGGTCAAGGGTCTGTTGTCTATGTGTGTGGCGAGGCAATGCCAAGC
ATTACCTTACCTTAGCAGGCCATCCTGAGGTGTGAGGTATATATGTATAT
GCATATGTACAATGGTAGTCGGCAGCAGCTGGCAGCAGACAGAGGAGGCG
CAGTCATCATGTTACGTTTCTATGCGTATAAATTTCAATACGACGTGTTG
AAGAACCTCTGCACATTCTGTCCAAAACGAAGCGTGCCATCCGTATTGTG
TAGTCGACAAGAGTGTGAGACAATGTATTCACCTCCGTGGCTCACGTCCC
AACCCCCCCCCCCCGTCCGCCGTTTCGATGTGCCCTAGGAAGGACTTCAA
GATCTACATGAACAAGCTACTGGAGCACAGCACCGCTCTAGAAACGGTAA
GCACCACCGGGTAGTAGCACCCTTCAGTACACCTACATTTCGACCAGTAA
AAGTTTGAGTGAAGTCTGTCATTCCATTGGCAGACACTGCTGTCGCGTCA
TCCGACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCACCCCCTTCCTTTTTCTTCCCGTGTCCCCCCCCCCCCCGGCC
CCCCCCCCCCCCCCCCCCCAACCCCCNNNNNNNNNTTCATTACCGCTACA
TTTCGACCAGTAAAGGTTTGAGTGAAGTCTGTCATTCCATTGGCAGACAC
TGCTGTCGCGTCACCCCCCCCCCCCCCCCCCCTCCCCCCCGCCTGCACCG
CCATCCCAGCTGCACATCAATGTACGTTCATTTTCTGTCCGGTTGCCATC
CCCCATGTGGCGCACTGCTCTCGATCCGTCAATACCGTTGTTGTCTGCGT
CATCTGTCTGCGTTTCGCACGTAACACGGCAGTTTCGACCTGACAAGCAC
CACTCGGATGTCGGTGATACGGGGAGTGGGGTTCCCGCGTGGGGCCCGTC
GCTTGGAATGTCGGAAGAGGGCGGTTCGGTGGGGGAGGCAAGGGGAAGCC
CTCCGGCGGGAGCCGCGGTTGACGTGACGATGCCCCCATTGTGAGCCGCT
TCCCCCCCCCCCCCCCTTTCGTGCTTGTATCGTGAGGAGGTACACTACTC
TACCAGTATATTGTGTCCCCCAAAACTGAAACTAAAAGATACCCAAAGAC
AAAATCAACATAAACACAATGCCACACGTCATGTCTATGTTCCGTAAGAG
GCGGAGATATGGCACCACCCCTAGACCAACTTTCAAAAGCTCGATTTTGC
TCTACAGCCAAGGGGGTGCGGAAAGAGCCCCGCAATTCTACCGAATGCCC
TCAACGAGATGGTTCCAAAACCACCATTTTTGGTGTTGGCACACTCGTTG
GTCAGGGAGCAAGCGAGTTTTTTTATATCGGTGTAGGGGGGGTGCCATCT
CTCCGCCTCGTGCGGTATTGGTGCTTTTGTGTGGTTCCGATATCGTAAGG
GTTGTGATGATGCCATGACGGTTGTTGTTGTTGGTGTCGTCCTGAGCGTG
GGAGCTATTTTGGATGCGAAAGGCGGCCGGTCAGCGTGGCTCCCGTTGTT
ATTTCTGTTTTATTGAGCGGCGTCGTTGGTGTGCCCGTCGTCGCAGAATA
CGTACGAACATGGCTACGTTTCCGGTGAGGCTTGAAGCAAGGGCCGTGTA
TACCAAGGGTGTCGACGCTTCTGTCCAGAGGGGCGCCATGTATCGTTGCT
GTGTTCGAACAGGCGCATGAGTGCAACACTCGTGCCGAGGTCGCCTTCTA
CCTTGTACAAGTTCTCAAACTCTCTTTCGTGCAGTACACCGGAGTTTTTT
CACTGAACCTCTATCCGCGGGAAGGATGTGTTGCCGGAAGTCCCCATCGG
TTCAAACCAAAGCCCTTCTTCATCCTTTACCCGCCCCTTCGCCCCCCCAC
TGACCGTGGCATAACTCACAAACAGTAGCAGCTCGCCAAGCCGCTACAGG
GAGGAAAAACACGCCTGGCCAAGAGCCGGCGCGGTCACCCCCCCTCGCCC
TCGCCCGCCTCCCAACTTCTCCTGGATGGCTGAGCCGGGGTCCCCGGCAT
CTCGCTGCCGCCGCGGCGGCGGGGGGGTTAGCGGCGGTGGCGCGAGAAAA
TCTCTCTCTTCTGCAGACTTCGCGTCGAGCCCCGCTCCCGCTGCTGGTGG
ACCGCGGATAGAGGGAGGCCGGTTGTCCGAAGACCTCGGCATGGACGACG
GCGGTCGGTCATGGGGGGCGGAGGAGGAGGAGGGGGATGCGGACGCGTGG
AAGGCCCAGTGGTCGAGGCGTCTGTCGAGGGGCCCGATCCATTCGGAGTA
CCAGGACAGGTTTCCATGGCCGCCGCGGTCGGCGTTCTTGGGAACGGCGG
GTGATGATGCGTTTAACGACGCGCCTCCGGCGCCTCATCCACGGGGTAGA
CGGGCGCCTGCTCGAGGCGGCGGCAGTGACCGGCGTCAATGGGGGAGTGC
CGTTGCCCGCGGTCGTGGTGGGAGCGAGCCCCCCCGCGGCCGTGCGGCGG
AAGGCTATCCTCGGGATGGGGGGGGAGTGGGGGGTGAGGAGCGGCGACGG
CGACGGCCGTCGTCGTCGTCGGTGGACACGGCAGCAGCGGGCCGAGGAGG
AGAAGGATCGCCCGGTGGCGGTAGAAGAGCCGGGACGGGCAGACTCCCGG
GAGGGGATCTCGATACGGCCGGTGGCAGCGGCGGCCGCGGCGGCGGCGGC
GGCGGCGGCGGTGAAAGTGGTGGTGGAGCCGCTGCTGTTGCGCCGTTCGT
TGCGGGAAAGCGGGGGGACGACAGGAAAGAAGGCGCTCGCCAGCAGGCGT
GGCGGAGGGGGGGCTCCGCGGTGGGATCGCCGCCCCCCTCGGAGCAGACC
TCGGGGCTGGAGGTCATCGGTCACCGCACCAGCAGGGCAAGCAGCGTCTA
CGACGAGAAGGAGTGGGAGGCGGGTAGGGGAAGCGAAGCTGATGGTGGCT
GGCCTTCGAGGGCGGCGGATGTCGGGGGCTCGTCCGTGGCGGCGGGAGCG
ACTTTGGTTGGGCGGGCGGGAGATGTGGCGGCGGCGGAGGTGTGGAGAGG
CGAGGCGGTGGGGCGCGGCGAGGTCACGATGATGTCTGGCGGGAGGACAC
TGGACTTCTCCTCCCAGGTGCAAGGATTGAGTGTTGTTGGCGAGGCTTGT
TCGTTCGTTAGGATTGGTTGCCATTTCGTGGGCCCCGTGATGGTATGGCT
TGTGGTCTTCCGACGGTAGCAGCCAATCGTAGTTTTCCTCTGGATTTTTT
TTTTTATTGTCTTCACTTCAGATCAGCGCTCACAGCACTATTATGGTGCC
GTTTACTCCAACCAGTGGTCACACAGAAGGGCCCCTCTCAACCCTCCCCT
CCTTCGGTACGTTGCCTTCGATTTTTAATGCGAGAAGAGTTCAGCACTCT
CTTCCCTCTGTATACACACGAACTAGCGCTATCCACTACTCCAGGAGCGG
AAGCGAGAGAAAAACTCACTTCGCAAGAAAAGCTCGCTTACGCCGGGATT
CGAACCCCTGACCTGACCTCTAGAAGGTTTCGGTGTTCTTCGGCCAAGTA
CTTTGGATAGCAGCTGTCTGCGGCATGCCTGCGAGCTTGTCGCCTTCTTT
TGAGTTTTTTTTCCACCTGACTTGCCCGGTGTTGCTACATCCCTCGAGGG
GGGATACTCTACCTGATAATATGCCACCATTGTCGCCAACGACAGCAGCT
GTGTCCTAATCTTCTGCGCGCTGGTAGTCGTCTAGTTATGTGGGCGAGCC
TTGCTCCTGACGTTCTTCCGAATCCCGCGATCATCACGATTTTCTCCTTC
GTTCTGTTGCGTTTTACTTCAGCAAAATGATGAGGAGCGTATTTTGGTTC
CCTTCTTGTGCGATTCATGGCACTTTGTTGTCATCGTTCCTCTTGGTCAT
GCGGCTGGGTTGTTATTGGCTAACCCTGAATAATGTCTTGCCGGCCGCCT
TGTTTTGGTTTAAACCCCGCCCTGTGAGCAGTCGATACTGACGGAGTACA
TGGACGAGTACGCTTGGCCTTCGACCCTCCCGGCTCCCGGTCGACGCGGG
AAAAGGAGCGGGATGGGGGTTGATCACGTGGGGCGTCTCCTGGCGGGAAG
GCGCGCCGAAGAGCCCGCTAGGAAGTGA back to topCoding sequence (CDS) from alignment at Ecto-sp8_S_contig10157:439..5716- >mRNA_Ecto-sp8_S_contig10157.258.1 ID=mRNA_Ecto-sp8_S_contig10157.258.1|Name=mRNA_Ecto-sp8_S_contig10157.258.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=1605bp|location=Sequence derived from alignment at Ecto-sp8_S_contig10157:439..5716- (Ectocarpus species8 EcLAC_412) ATGTTGTCAGGAAGAGCAGGATGTTCCCAACCCCACGCCATCGAGCAAGC CAGGAAGGACTTCAAGATCTACATGAACAAGCTACTGGAGCACAGCACCG CTCTAGAAACGTTTCGACCTGACAAGCACCACTCGGATGTCGGTGATACG GGGAGTGGGGTTCCCGCGTGGGGCCCGTCGCTTGGAATGTCGGAAGAGGG CGGTTCGGTGGGGGAGGCAAGGGGAAGCCCTCCGGCGGGAGCCGCGGTTG ACGTGACGATGCCCCCATTCTCGCCAAGCCGCTACAGGGAGGAAAAACAC GCCTGGCCAAGAGCCGGCGCGGTCACCCCCCCTCGCCCTCGCCCGCCTCC CAACTTCTCCTGGATGGCTGAGCCGGGGTCCCCGGCATCTCGCTGCCGCC GCGGCGGCGGGGGGGTTAGCGGCGGTGGCGCGAGAAAATCTCTCTCTTCT GCAGACTTCGCGTCGAGCCCCGCTCCCGCTGCTGGTGGACCGCGGATAGA GGGAGGCCGGTTGTCCGAAGACCTCGGCATGGACGACGGCGGTCGGTCAT GGGGGGCGGAGGAGGAGGAGGGGGATGCGGACGCGTGGAAGGCCCAGTGG TCGAGGCGTCTGTCGAGGGGCCCGATCCATTCGGAGTACCAGGACAGGTT TCCATGGCCGCCGCGGTCGGCGTTCTTGGGAACGGCGGGTGATGATGCGT TTAACGACGCGCCTCCGGCGCCTCATCCACGGGGTAGACGGGCGCCTGCT CGAGGCGGCGGCAGTGACCGGCGTCAATGGGGGAGTGCCGTTGCCCGCGG TCGTGGTGGGAGCGAGCCCCCCCGCGGCCGTGCGGCGGAAGGCTATCCTC GGGATGGGGGGGGAGTGGGGGGTGAGGAGCGGCGACGGCGACGGCCGTCG TCGTCGTCGGTGGACACGGCAGCAGCGGGCCGAGGAGGAGAAGGATCGCC CGGTGGCGGTAGAAGAGCCGGGACGGGCAGACTCCCGGGAGGGGATCTCG ATACGGCCGGTGGCAGCGGCGGCCGCGGCGGCGGCGGCGGCGGCGGCGGT GAAAGTGGTGGTGGAGCCGCTGCTGTTGCGCCGTTCGTTGCGGGAAAGCG GGGGGACGACAGGAAAGAAGGCGCTCGCCAGCAGGCGTGGCGGAGGGGGG GCTCCGCGGTGGGATCGCCGCCCCCCTCGGAGCAGACCTCGGGGCTGGAG GTCATCGGTCACCGCACCAGCAGGGCAAGCAGCGTCTACGACGAGAAGGA GTGGGAGGCGGGTAGGGGAAGCGAAGCTGATGGTGGCTGGCCTTCGAGGG CGGCGGATGTCGGGGGCTCGTCCGTGGCGGCGGGAGCGACTTTGGTTGGG CGGGCGGGAGATGTGGCGGCGGCGGAGGTGTGGAGAGGCGAGGCGGTGGG GCGCGGCGAGGTCACGATGATGTCTGGCGGGAGGACACTGGACTTCTCCT CCCAGCAGTCGATACTGACGGAGTACATGGACGAGTACGCTTGGCCTTCG ACCCTCCCGGCTCCCGGTCGACGCGGGAAAAGGAGCGGGATGGGGGTTGA TCACGTGGGGCGTCTCCTGGCGGGAAGGCGCGCCGAAGAGCCCGCTAGGA AGTGA back to top
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