mRNA_Ecto-sp8_S_contig101566.255.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig101566.255.1
Unique NamemRNA_Ecto-sp8_S_contig101566.255.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig101566.255.1 vs. uniprot
Match: D7G8H7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8H7_ECTSI)

HSP 1 Score: 205 bits (522), Expect = 5.150e-66
Identity = 107/114 (93.86%), Postives = 109/114 (95.61%), Query Frame = 1 
Query:    1 IMGSSLGVLAAYSAGEGTQPLRQLVYLLLLSVGAAAVTTAACSWLAGDAVQNGGSVGIMVLAIVASLGSTAVFTIDKHNMLLTRAATTAAFDDRERHEGLPHLHEESLMDLKAV 342
            IMGSSLGVLAAYSAGEGTQPLRQL+YLLLLSVGAAAVTTAACSWL GD +QNGGSVGIMVLA VASLGSTAVFTIDKHNMLLTRAAT AAFDDRERHEGLPHL EESLMDLKAV
Sbjct:   51 IMGSSLGVLAAYSAGEGTQPLRQLLYLLLLSVGAAAVTTAACSWLTGDVLQNGGSVGIMVLATVASLGSTAVFTIDKHNMLLTRAATAAAFDDRERHEGLPHLQEESLMDLKAV 164
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig101566.255.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G8H7_ECTSI5.150e-6693.86Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig101566contigEcto-sp8_S_contig101566:5..533 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size345
Hectar predicted targeting categorysignal peptide
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-14_003080.1
Cds size342
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143113.252202-CDS-Ecto-sp8_S_contig101566:4..1931681143113.252202-CDS-Ecto-sp8_S_contig101566:4..193Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig101566 5..193 -
1681143113.268508-CDS-Ecto-sp8_S_contig101566:377..5301681143113.268508-CDS-Ecto-sp8_S_contig101566:377..530Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig101566 378..530 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143113.2759435-UTR-Ecto-sp8_S_contig101566:530..5331681143113.2759435-UTR-Ecto-sp8_S_contig101566:530..533Ectocarpus species8 EcLAC_412UTREcto-sp8_S_contig101566 531..533 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig101566.255.1prot_Ecto-sp8_S_contig101566.255.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig101566 5..530 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig101566.255.1

>prot_Ecto-sp8_S_contig101566.255.1 ID=prot_Ecto-sp8_S_contig101566.255.1|Name=mRNA_Ecto-sp8_S_contig101566.255.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=114bp
MGSSLGVLAAYSAGEGTQPLRQLVYLLLLSVGAAAVTTAACSWLAGDAVQ
NGGSVGIMVLAIVASLGSTAVFTIDKHNMLLTRAATTAAFDDRERHEGLP
HLHEESLMDLKAV*
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mRNA from alignment at Ecto-sp8_S_contig101566:5..533-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig101566.255.1 ID=mRNA_Ecto-sp8_S_contig101566.255.1|Name=mRNA_Ecto-sp8_S_contig101566.255.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=529bp|location=Sequence derived from alignment at Ecto-sp8_S_contig101566:5..533- (Ectocarpus species8 EcLAC_412)
ATTATGGGATCCTCTCTCGGGGTACTTGCAGCCTATTCGGCAGGGGAAGG
GACTCAGCCCCTCCGACAGCTGGTCTACCTTCTGCTGCTCAGCGTGGGGG
CAGCCGCAGTGACAACCGCAGCATGTAGCTGGCTGGCGGGCGATGCCGTA
CAGAATGTGAGAGCGAATGCAGCAGAATGATGCTTGCAGTTGTTGAATAC
GTGTGGACGAACTCTTTGTGTTCCAATCAAGACGGCATTTACCGTAGTTT
TGATGCATATATCACACGCGTTGTCGTCCATGTGAACGTTTAGTGCCGTC
GTTTCTTGAACCGACCCACGGTTGTGTGCTTGGTGCCCAGGGCGGGAGCG
TCGGCATCATGGTGCTGGCAATAGTGGCATCGCTAGGCTCGACGGCGGTC
TTCACCATTGACAAGCACAACATGCTGCTCACACGAGCAGCCACGACTGC
GGCATTCGATGACCGCGAGCGACACGAAGGATTGCCACATCTCCACGAGG
AGTCCTTGATGGATCTCAAGGCGGTCTGA
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig101566:5..533-

>mRNA_Ecto-sp8_S_contig101566.255.1 ID=mRNA_Ecto-sp8_S_contig101566.255.1|Name=mRNA_Ecto-sp8_S_contig101566.255.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=342bp|location=Sequence derived from alignment at Ecto-sp8_S_contig101566:5..533- (Ectocarpus species8 EcLAC_412)
ATGGGATCCTCTCTCGGGGTACTTGCAGCCTATTCGGCAGGGGAAGGGAC
TCAGCCCCTCCGACAGCTGGTCTACCTTCTGCTGCTCAGCGTGGGGGCAG
CCGCAGTGACAACCGCAGCATGTAGCTGGCTGGCGGGCGATGCCGTACAG
AATGGCGGGAGCGTCGGCATCATGGTGCTGGCAATAGTGGCATCGCTAGG
CTCGACGGCGGTCTTCACCATTGACAAGCACAACATGCTGCTCACACGAG
CAGCCACGACTGCGGCATTCGATGACCGCGAGCGACACGAAGGATTGCCA
CATCTCCACGAGGAGTCCTTGATGGATCTCAAGGCGGTCTGA
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