mRNA_Ecto-sp8_S_contig101472.240.1 (mRNA) Ectocarpus species8 EcLAC_412

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp8_S_contig101472.240.1
Unique NamemRNA_Ecto-sp8_S_contig101472.240.1
TypemRNA
OrganismEctocarpus species8 EcLAC_412 (Ectocarpus species8 EcLAC_412)
Homology
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BLAST of mRNA_Ecto-sp8_S_contig101472.240.1 vs. uniprot
Match: D7FRA8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRA8_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 1.790e-23
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 1 
Query:    1 VEGELEYRLRQKASLQTMLKEKMLELDRQNLQYQSLLRIESEQLALIERLSNSE 162
            VEGELEYRLRQKASLQTMLKEKMLELDRQNLQYQSLLRIESEQLALIERLSNSE
Sbjct:   77 VEGELEYRLRQKASLQTMLKEKMLELDRQNLQYQSLLRIESEQLALIERLSNSE 130
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BLAST of mRNA_Ecto-sp8_S_contig101472.240.1 vs. uniprot
Match: A0A836CJD0_9STRA (Intraflagellar transport protein 20 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJD0_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 6.730e-14
Identity = 38/54 (70.37%), Postives = 47/54 (87.04%), Query Frame = 1 
Query:    1 VEGELEYRLRQKASLQTMLKEKMLELDRQNLQYQSLLRIESEQLALIERLSNSE 162
            V+GE E+R RQ+ +LQ ++KEKM ELDR N+QYQSLLR+E+EQ ALIERLSNSE
Sbjct:   80 VDGEAEHRARQRMALQVLIKEKMSELDRNNVQYQSLLRVEAEQQALIERLSNSE 133
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BLAST of mRNA_Ecto-sp8_S_contig101472.240.1 vs. uniprot
Match: A0A7S2BU93_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BU93_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 9.500e-9
Identity = 33/54 (61.11%), Postives = 42/54 (77.78%), Query Frame = 1 
Query:    1 VEGELEYRLRQKASLQTMLKEKMLELDRQNLQYQSLLRIESEQLALIERLSNSE 162
            VE E E R R++ +LQ+ + EKM ELDR   QYQSL R+E+EQLALIE+LSN+E
Sbjct:   98 VESETENRARRQLALQSQINEKMAELDRYAKQYQSLARVEAEQLALIEKLSNNE 151
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BLAST of mRNA_Ecto-sp8_S_contig101472.240.1 vs. uniprot
Match: A0A7S2V367_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V367_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 1.010e-7
Identity = 29/54 (53.70%), Postives = 43/54 (79.63%), Query Frame = 1 
Query:    1 VEGELEYRLRQKASLQTMLKEKMLELDRQNLQYQSLLRIESEQLALIERLSNSE 162
            VEGE E+R RQ+ +L T++ EK  ELDR  LQ+QSL+ +E+EQ A++ERL+N++
Sbjct:   76 VEGEREHRERQRIALNTLIAEKKAELDRYTLQHQSLVIVEAEQAAMVERLTNND 129
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BLAST of mRNA_Ecto-sp8_S_contig101472.240.1 vs. uniprot
Match: A0A7S2W6I1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W6I1_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 2.780e-7
Identity = 31/54 (57.41%), Postives = 41/54 (75.93%), Query Frame = 1 
Query:    1 VEGELEYRLRQKASLQTMLKEKMLELDRQNLQYQSLLRIESEQLALIERLSNSE 162
            VE E+E R  +K +LQ+ + EKM EL+R N QY SL+ +E+EQLALIE+LSN E
Sbjct:   76 VESEVENRESKKRALQSQINEKMAELERFNKQYNSLVNLEAEQLALIEKLSNHE 129
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BLAST of mRNA_Ecto-sp8_S_contig101472.240.1 vs. uniprot
Match: A0A024FSV7_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024FSV7_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 8.250e-7
Identity = 30/54 (55.56%), Postives = 40/54 (74.07%), Query Frame = 1 
Query:    1 VEGELEYRLRQKASLQTMLKEKMLELDRQNLQYQSLLRIESEQLALIERLSNSE 162
            V+ ELE R RQKA  Q ++KEK  EL+R NLQY+SL ++  EQ  L+E+LSN+E
Sbjct:   79 VDSELENRNRQKAITQLLIKEKQTELERYNLQYESLSKVLEEQQVLMEKLSNNE 132
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BLAST of mRNA_Ecto-sp8_S_contig101472.240.1 vs. uniprot
Match: K3XDM9_GLOUD (Uncharacterized protein n=2 Tax=Pythiaceae TaxID=4782 RepID=K3XDM9_GLOUD)

HSP 1 Score: 50.8 bits (120), Expect = 1.640e-6
Identity = 29/54 (53.70%), Postives = 42/54 (77.78%), Query Frame = 1 
Query:    1 VEGELEYRLRQKASLQTMLKEKMLELDRQNLQYQSLLRIESEQLALIERLSNSE 162
            V+ E+E R RQK  L++++KEK  EL+R +LQ+QSL +I  EQ ALI++LSN+E
Sbjct:   79 VDSEVENRNRQKQMLESLIKEKQTELERYDLQHQSLTKIADEQQALIDKLSNNE 132
[Close]
BLAST of mRNA_Ecto-sp8_S_contig101472.240.1 vs. uniprot
Match: H3GSG3_PHYRM (Uncharacterized protein n=22 Tax=Peronosporaceae TaxID=4777 RepID=H3GSG3_PHYRM)

HSP 1 Score: 50.4 bits (119), Expect = 2.310e-6
Identity = 28/54 (51.85%), Postives = 40/54 (74.07%), Query Frame = 1 
Query:    1 VEGELEYRLRQKASLQTMLKEKMLELDRQNLQYQSLLRIESEQLALIERLSNSE 162
            V+ E+E R+RQK  L+  +KEK  EL+R NLQ+QSL +I  EQ  L+++LSN+E
Sbjct:   79 VDSEVENRIRQKQMLELQIKEKKTELERYNLQFQSLTKIADEQQVLMDKLSNNE 132
[Close]
BLAST of mRNA_Ecto-sp8_S_contig101472.240.1 vs. uniprot
Match: G4Z1H3_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4Z1H3_PHYSP)

HSP 1 Score: 50.1 bits (118), Expect = 2.480e-6
Identity = 29/54 (53.70%), Postives = 41/54 (75.93%), Query Frame = 1 
Query:    1 VEGELEYRLRQKASLQTMLKEKMLELDRQNLQYQSLLRIESEQLALIERLSNSE 162
            V+ E+E R RQK  L+ ++KEK  EL+R NLQ+QSL +I  EQ AL+++LSN+E
Sbjct:   64 VDSEVENRNRQKQMLKLLIKEKKTELERYNLQFQSLSKIADEQQALMDKLSNNE 117
[Close]
BLAST of mRNA_Ecto-sp8_S_contig101472.240.1 vs. uniprot
Match: A0A482RYA9_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RYA9_9ARCH)

HSP 1 Score: 48.5 bits (114), Expect = 2.610e-6
Identity = 29/52 (55.77%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:    4 EGELEYRLRQKASLQTMLKEKMLELDRQNLQYQSLLRIESEQLALIERLSNS 159
            E E E R RQ+ +LQTM+ EK  ELDR N+Q QSL RIE+EQ + IE+++N+
Sbjct:    4 ENEDEQRHRQERALQTMINEKKAELDRYNVQLQSLERIEAEQKSTIEKITNN 55
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp8_S_contig101472.240.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D7FRA8_ECTSI1.790e-23100.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CJD0_9STRA6.730e-1470.37Intraflagellar transport protein 20 n=1 Tax=Tribon... [more]
A0A7S2BU93_9STRA9.500e-961.11Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2V367_9STRA1.010e-753.70Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2W6I1_9STRA2.780e-757.41Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A024FSV7_9STRA8.250e-755.56Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
K3XDM9_GLOUD1.640e-653.70Uncharacterized protein n=2 Tax=Pythiaceae TaxID=4... [more]
H3GSG3_PHYRM2.310e-651.85Uncharacterized protein n=22 Tax=Peronosporaceae T... [more]
G4Z1H3_PHYSP2.480e-653.70Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
A0A482RYA9_9ARCH2.610e-655.77Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp8_S_contig101472contigEcto-sp8_S_contig101472:373..534 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species8 EcLAC_412 OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score94.0
Seed ortholog evalue2.3e-17
Seed eggNOG ortholog2880.D7FRA8
Preferred nameIFT20
Model size162
KEGG koko:K16473
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000139,GO:0001655,GO:0001736,GO:0001738,GO:0001750,GO:0001822,GO:0002009,GO:0002046,GO:0003008,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005801,GO:0005813,GO:0005814,GO:0005815,GO:0005856,GO:0005902,GO:0005929,GO:0005930,GO:0006810,GO:0006928,GO:0006996,GO:0007017,GO:0007018,GO:0007154,GO:0007164,GO:0007165,GO:0007166,GO:0007224,GO:0007275,GO:0007399,GO:0007423,GO:0007507,GO:0007610,GO:0007611,GO:0007612,GO:0007632,GO:0008104,GO:0008150,GO:0008283,GO:0008306,GO:0008542,GO:0009314,GO:0009416,GO:0009628,GO:0009653,GO:0009888,GO:0009894,GO:0009966,GO:0009987,GO:0010506,GO:0010646,GO:0010970,GO:0012505,GO:0014706,GO:0015031,GO:0015630,GO:0015833,GO:0016020,GO:0016043,GO:0016241,GO:0017016,GO:0017137,GO:0019222,GO:0019899,GO:0022008,GO:0022607,GO:0023051,GO:0023052,GO:0030030,GO:0030031,GO:0030111,GO:0030154,GO:0030182,GO:0030425,GO:0030705,GO:0030990,GO:0030992,GO:0031090,GO:0031175,GO:0031267,GO:0031323,GO:0031329,GO:0031344,GO:0031503,GO:0031514,GO:0031984,GO:0032391,GO:0032420,GO:0032421,GO:0032501,GO:0032502,GO:0032838,GO:0032991,GO:0033036,GO:0033043,GO:0033365,GO:0034067,GO:0034613,GO:0035051,GO:0035735,GO:0035845,GO:0035869,GO:0036064,GO:0036372,GO:0036477,GO:0042073,GO:0042461,GO:0042490,GO:0042692,GO:0042886,GO:0042995,GO:0043005,GO:0043025,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043583,GO:0044085,GO:0044087,GO:0044088,GO:0044292,GO:0044297,GO:0044422,GO:0044424,GO:0044430,GO:0044431,GO:0044441,GO:0044444,GO:0044446,GO:0044450,GO:0044463,GO:0044464,GO:0044782,GO:0045184,GO:0046530,GO:0046907,GO:0048468,GO:0048513,GO:0048583,GO:0048666,GO:0048699,GO:0048729,GO:0048731,GO:0048738,GO:0048839,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050877,GO:0050890,GO:0050896,GO:0051020,GO:0051128,GO:0051146,GO:0051179,GO:0051234,GO:0051640,GO:0051641,GO:0051642,GO:0051649,GO:0051716,GO:0055007,GO:0060091,GO:0060113,GO:0060119,GO:0060122,GO:0060271,GO:0060429,GO:0060491,GO:0060537,GO:0060828,GO:0061061,GO:0061351,GO:0061512,GO:0061842,GO:0065007,GO:0070727,GO:0070925,GO:0071702,GO:0071705,GO:0071840,GO:0072001,GO:0072359,GO:0072657,GO:0072659,GO:0090102,GO:0097014,GO:0097447,GO:0097458,GO:0097542,GO:0097546,GO:0097730,GO:0097731,GO:0097732,GO:0097733,GO:0098588,GO:0098791,GO:0098858,GO:0098862,GO:0099111,GO:0099568,GO:0120025,GO:0120031,GO:0120032,GO:0120035,GO:0120036,GO:0120038,GO:1902017,GO:1902115,GO:1902636,GO:1990778,GO:2000785
Exons1
EggNOG free text desc.opsin transport
EggNOG OGs2AFZ8@1,2RYYR@2759
Cds size162
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681143112.2842455-CDS-Ecto-sp8_S_contig101472:372..5341681143112.2842455-CDS-Ecto-sp8_S_contig101472:372..534Ectocarpus species8 EcLAC_412CDSEcto-sp8_S_contig101472 373..534 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp8_S_contig101472.240.1prot_Ecto-sp8_S_contig101472.240.1Ectocarpus species8 EcLAC_412polypeptideEcto-sp8_S_contig101472 373..534 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp8_S_contig101472.240.1

>prot_Ecto-sp8_S_contig101472.240.1 ID=prot_Ecto-sp8_S_contig101472.240.1|Name=mRNA_Ecto-sp8_S_contig101472.240.1|organism=Ectocarpus species8 EcLAC_412|type=polypeptide|length=54bp
VEGELEYRLRQKASLQTMLKEKMLELDRQNLQYQSLLRIESEQLALIERL
SNSE
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mRNA from alignment at Ecto-sp8_S_contig101472:373..534-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp8_S_contig101472.240.1 ID=mRNA_Ecto-sp8_S_contig101472.240.1|Name=mRNA_Ecto-sp8_S_contig101472.240.1|organism=Ectocarpus species8 EcLAC_412|type=mRNA|length=162bp|location=Sequence derived from alignment at Ecto-sp8_S_contig101472:373..534- (Ectocarpus species8 EcLAC_412)
GTCGAGGGGGAGCTAGAGTATCGCCTGCGACAAAAAGCTTCTCTTCAGAC
AATGCTTAAGGAAAAGATGCTGGAGCTGGATCGTCAGAACCTTCAGTACC
AGTCTCTTTTGAGGATTGAGAGCGAACAGCTAGCCTTGATCGAGCGGCTC
AGCAATAGCGAG
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Coding sequence (CDS) from alignment at Ecto-sp8_S_contig101472:373..534-

>mRNA_Ecto-sp8_S_contig101472.240.1 ID=mRNA_Ecto-sp8_S_contig101472.240.1|Name=mRNA_Ecto-sp8_S_contig101472.240.1|organism=Ectocarpus species8 EcLAC_412|type=CDS|length=162bp|location=Sequence derived from alignment at Ecto-sp8_S_contig101472:373..534- (Ectocarpus species8 EcLAC_412)
GTCGAGGGGGAGCTAGAGTATCGCCTGCGACAAAAAGCTTCTCTTCAGAC
AATGCTTAAGGAAAAGATGCTGGAGCTGGATCGTCAGAACCTTCAGTACC
AGTCTCTTTTGAGGATTGAGAGCGAACAGCTAGCCTTGATCGAGCGGCTC
AGCAATAGCGAG
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