Ec-00_000580.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ec-00_000580.1
Unique Name	Ec-00_000580.1
Type	mRNA
Organism	Ectocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length	70

Homology

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BLAST of Ec-00_000580.1 vs. uniprot
Match: D7FHV6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHV6_ECTSI)

HSP 1 Score: 146 bits (369), Expect = 8.720e-45
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1

Query:    1 MRSKRITFAAQLHIALLPSPPSPGLDASGDVPQGFRRRLHARKVLDLGLESTTAVGFSGAFHSWETHCY 207
            MRSKRITFAAQLHIALLPSPPSPGLDASGDVPQGFRRRLHARKVLDLGLESTTAVGFSGAFHSWETHCY
Sbjct:    1 MRSKRITFAAQLHIALLPSPPSPGLDASGDVPQGFRRRLHARKVLDLGLESTTAVGFSGAFHSWETHCY 69

The following BLAST results are available for this feature:

BLAST of Ec-00_000580.1 vs. uniprot

BLAST of Ec-00_000580.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
D7FHV6_ECTSI	8.720e-45	100.00	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr_00	contig	chr_00:799293..803407 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR	2016-10-08

Properties


Property Name	Value
Length	210
Hectar predicted targeting category	other localisation
Gene id	Ec-00_000580.1

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ec-00_000580	Ec-00_000580	Ectocarpus species7 Ec32 male_plus_femaleSDR	gene	chr_00 799293..803407 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_000580.1.1	Ec-00_000580.1.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 799293..799356 +
Ec-00_000580.1.2	Ec-00_000580.1.2	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 799956..800020 +
Ec-00_000580.1.3	Ec-00_000580.1.3	Ectocarpus species7 Ec32 male_plus_femaleSDR	exon	chr_00 803327..803407 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_000580.1	CDS:Ec-00_000580.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	CDS	chr_00 799293..799356 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ec-00_000580.1	Ec-00_000580.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	polypeptide	chr_00 799293..803407 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at chr_00:799293..803407+
coding sequence from alignment at chr_00:799293..803407+

mRNA sequence

>Ec-00_000580.1 ID=Ec-00_000580.1|Name=Ec-00_000580.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=70bp
MRSKRITFAAQLHIALLPSPPSPGLDASGDVPQGFRRRLHARKVLDLGLE
STTAVGFSGAFHSWETHCY*

spliced messenger RNA

>Ec-00_000580.1 ID=Ec-00_000580.1|Name=Ec-00_000580.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=210bp|location=Sequence derived from alignment at chr_00:799293..803407+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGATCCAAGCGCATAACCTTCGCTGCTCAGCTGCACATTGCGTTGCT
CCCGAGCCCTCCGAGTCCTGGACTTGACGCGAGTGGAGACGTCCCTCAGG
GGTTTCGTCGGAGGCTTCACGCACGGAAGGTGCTAGATTTGGGGCTGGAG
TCAACTACCGCGGTGGGCTTTTCAGGGGCCTTCCACTCATGGGAGACGCA
CTGCTACTAG

protein sequence of Ec-00_000580.1

>Ec-00_000580.1 ID=Ec-00_000580.1|Name=Ec-00_000580.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=70bp
MRSKRITFAAQLHIALLPSPPSPGLDASGDVPQGFRRRLHARKVLDLGLE
STTAVGFSGAFHSWETHCY*

mRNA from alignment at chr_00:799293..803407+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ec-00_000580.1 ID=Ec-00_000580.1|Name=Ec-00_000580.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=4115bp|location=Sequence derived from alignment at chr_00:799293..803407+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCGATCCAAGCGCATAACCTTCGCTGCTCAGCTGCACATTGCGTTGCT
CCCGAGCCCTCCGAGCGCGTGTGTTTGACAATATACTCGTTTGTGCTCAG
TAGATGACGGCCTCTTTCTCTCTGTGTCGCGACTAAATTCCGAATATATG
TGACTTTCCATCATCGATTTGCCCCCATTTTCGGTTCTTAGCGGTTTGCT
TAGCGGTGCCCTTCCTGTATGTCTTTCTGGTTTTTATCTGTTCGCGTTGT
CCCCGTCGAGCCCACTTACAGCTTTTCGAACATCTCCACGACAACAAGTA
GGTTGAATGCAACAACAGCCTGGACCATTCGCGTGCACAGCCACATCTTT
CTAACTGTCTACCGTGAATGTTAGCACCACGTTGTGGCTGAAGCTCGTGC
GCCCTACAACAAGTTCCATTTGCTCCGTCCAACTCAGTCTCTGTCTCTTT
GTCTGTGTCTGTCTGTCTCTCTCTATCTCTCTCACTCTGTCTGTCTGTCT
GTCTGTCTTTCCCTCTCCCTCTCTTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCCTTTTTGTATCGTTCCCACCAC
ACATCGCCGTCAGGTCCTGGACTTGACGCGAGTGGAGACGTCCCTCAGGG
GTTTCGTCGGAGGCTTCACGCACGGAAGGTAAGCATCGTACATAGAGCTA
AAAGCACACAAACGCGTGTGCCTTCGGCCATGATTGGTGCGCAAGAGAGT
TACACATGGTGAACACATACGTGATGTGGGGGCCCGGAGTTGGCTTGCCT
GACCTACACAACCAAGGAGGGCCGCGAATGCTCACTCCAGCCGACACCAT
TGGTCGATGAGTGCACACTTATGGTTCCGGTTGAAACATGGCAATACCCA
ACACACTCTGGTTTTCGAAGCCTTGCGAATGGATGATGGTCGGTGATTTC
ACAGCCCACGCCCCCTCCCTCAAGGGATGCAGTTACAGGTCCGCAGTCGA
GAAAAAGTTGATAATGTTTTGAGGCTCAATCTTCTACTTTGCCGCCATCC
TTAGGCACAGGCCACCTTGTTGGACCACAGGCACAGGCCCACATCCGAGC
TGTGTTTCTCGATCGTTTCGTTCTCTTGCTTCGAGACTATCTCAGCTACT
CCGGGTTTGACAGTTACAGTAGTGTTCCCATGGAATACGTACGCTTTGTT
TTGGCTCAGCTTCTGAGTTGCGAGCGGTATGTTCTGTCTTGCCTGTGGGA
GTTGTTTGCCCTCCTTTTCTGTGCGACGTTCTGGACTTGGTCGTTCGACA
GCTGCCTCTTTCTTCGCGATGTGCTGCGTAATTTGTAGGTATTAGCTTCG
TCTGGGACTGCTTGTCACCACCGACAATACCTCAACACACTTGAGCCGGC
CGAAGAGGTACTAGGTAGGTTACTGTGCACCTATGGAAAGGGACGCTTGC
TCAACGGTCAGCTGACAACAAGGCCACCAACATATGAGTACCCCTCCCCC
CCCCCCCCCCCCCCGTTTCCCTTTTGTTTCATTTAACTCTTCAAAGGACC
CGATCCTCTCTCCCTAAGCCAACGGAAATACGACGGGAAAATTCCGCGGG
CGGTTGCATTTTTACCCCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NGTCAATAGGGGGGAGATGTTGCCCATGGGGGCGGGGGAAGGGGGGGGAA
ATTAGGAGGGTTTGCGGTTCCGGGGAGCCAAACCCCTTTTTTTTTAGGCT
GGGGTCTCCAAACCAAAAACATTTTTTTTTTTTTGTTTGGTTTCCCCAGG
AACCAAACTCCTTGGGGCCCCCCAATGTAAGTTGGTGGGCTCCCCCCCCC
CCCCCCCCGGACAACTCTTATTGTTCAGTTCAATCTCACCAACTTAGGTG
TCCGCGGGGATGACGCGAGTTTGGTGATGATTCGGGCATTTTTCGTTTCT
CTGTGGTTGTGACAGCGCCGACAGCTCTAATCGTATCTCCGGCACTAGCA
TAGCAACGCACACCCACTTGTACCACACAAAACGTTTGACCCCCGATATT
TGAACCAGTCTTCTTTTTCTCGGTGACAGCTGATATCCAAAGAAAAAAAC
TCTGCAACCGGCAGCTTTCACGCCACGTCATGATGTGTGCCTTCAATCCC
ATGACGCACAAGTACTCGCCGACGAGACCTCGAGAGAATAAAAACGTCAT
CAGAGAGTTTTTGTCTCCCCGCTGTTGACCCCCTATAATAGTGTTGTCTG
ATCTACTCGTGCTCTGTGATGCACGCACTAGTCCGCTGGATGATATCCTA
TTTCCGTCTCTGCTACCTGTCTGTCTGAATGATTGTGTGTTTCCCATGTA
GGGTGAATGCTTCCGTTTCCTCTCGCCCCTCAACGCCAAGGTTGTGACCG
AGTTTGTTCGGTGACTCGGTTTCGTCAAAAATGCCACTCCAACACCCCCG
CATCAAACATGACCGTCGTCTTCGTCCTCCCCCTACTCCTGCTGCTGCTG
CCTGTCGTGTGTGCGCACGCGTGCGCGCCCGAAGGTGCTAGATTTGGGGC
TGGAGTCAACTACCGCGGTGGGCTTTTCAGGGGCCTTCCACTCATGGGAG
ACGCACTGCTACTAG

Coding sequence (CDS) from alignment at chr_00:799293..803407+

>Ec-00_000580.1 ID=Ec-00_000580.1|Name=Ec-00_000580.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=210bp|location=Sequence derived from alignment at chr_00:799293..803407+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCGATCCAAGCGCATAACCTTCGCTGCTCAGCTGCACATTGCGTTGCT
CCCGAGCCCTCCGAGTCCTGGACTTGACGCGAGTGGAGACGTCCCTCAGG
GGTTTCGTCGGAGGCTTCACGCACGGAAGGTGCTAGATTTGGGGCTGGAG
TCAACTACCGCGGTGGGCTTTTCAGGGGCCTTCCACTCATGGGAGACGCA
CTGCTACTAG

Synonyms

The feature 'Ec-00_000580.1' has the following synonyms


Synonym
Esi1132_0001
Esi_1132_0001