Ec-00_003790.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_003790.1
Unique NameEc-00_003790.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length115
Homology
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BLAST of Ec-00_003790.1 vs. uniprot
Match: D8LJH0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJH0_ECTSI)

HSP 1 Score: 228 bits (582), Expect = 7.100e-76
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 1 
Query:    1 MIDQIFSSGSRRLIRGWRRRSRAIQPESRRSNKSKGGNFFSLRGRAIFCLISPWIGYPISYGRDATTPTKACTLEEMTTAPATQTKSNLTTTVLKTKTNTATVLRPGECRGGCR 342
            MIDQIFSSGSRRLIRGWRRRSRAIQPESRRSNKSKGGNFFSLRGRAIFCLISPWIGYPISYGRDATTPTKACTLEEMTTAPATQTKSNLTTTVLKTKTNTATVLRPGECRGGCR
Sbjct:    1 MIDQIFSSGSRRLIRGWRRRSRAIQPESRRSNKSKGGNFFSLRGRAIFCLISPWIGYPISYGRDATTPTKACTLEEMTTAPATQTKSNLTTTVLKTKTNTATVLRPGECRGGCR 114
The following BLAST results are available for this feature:
BLAST of Ec-00_003790.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LJH0_ECTSI7.100e-76100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:4130984..4132188 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length345
Hectar predicted targeting categorymitochondrion
Gene idEc-00_003790.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_003790Ec-00_003790Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 4130984..4132188 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003790.1.1Ec-00_003790.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 4130984..4131006 +
Ec-00_003790.1.2Ec-00_003790.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 4131622..4131667 +
Ec-00_003790.1.3Ec-00_003790.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 4131913..4132188 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003790.1CDS:Ec-00_003790.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 4130984..4131006 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003790.1Ec-00_003790.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 4130984..4132188 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_003790.1 ID=Ec-00_003790.1|Name=Ec-00_003790.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=115bp
MIDQIFSSGSRRLIRGWRRRSRAIQPESRRSNKSKGGNFFSLRGRAIFCL
ISPWIGYPISYGRDATTPTKACTLEEMTTAPATQTKSNLTTTVLKTKTNT
ATVLRPGECRGGCR*
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spliced messenger RNA

>Ec-00_003790.1 ID=Ec-00_003790.1|Name=Ec-00_003790.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=345bp|location=Sequence derived from alignment at chr_00:4130984..4132188+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCGACCAGATCTTCTCGAGCGGTTCGAGGCGTCTCATTCGAGGATG
GCGGCGGCGTTCCCGGGCGATCCAGCCCGAGTCCAGGCGCTCAAACAAGA
GCAAAGGCGGCAACTTCTTCTCCTTGAGAGGAAGGGCCATCTTCTGCCTG
ATCTCCCCGTGGATTGGCTACCCGATATCATACGGGAGGGATGCGACGAC
TCCGACGAAGGCCTGCACGTTGGAGGAAATGACGACGGCGCCAGCGACAC
AGACGAAATCCAATCTGACCACGACAGTTCTGAAGACTAAGACGAACACG
GCCACTGTGCTGCGGCCGGGAGAGTGCAGGGGCGGTTGCCGGTGA
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protein sequence of Ec-00_003790.1

>Ec-00_003790.1 ID=Ec-00_003790.1|Name=Ec-00_003790.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=115bp
MIDQIFSSGSRRLIRGWRRRSRAIQPESRRSNKSKGGNFFSLRGRAIFCL
ISPWIGYPISYGRDATTPTKACTLEEMTTAPATQTKSNLTTTVLKTKTNT
ATVLRPGECRGGCR*
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mRNA from alignment at chr_00:4130984..4132188+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_003790.1 ID=Ec-00_003790.1|Name=Ec-00_003790.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1205bp|location=Sequence derived from alignment at chr_00:4130984..4132188+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGATCGACCAGATCTTCTCGAGGTGAGTATCGGAGAAGGAAGAAGAGAC
GGACGACACTTTTCTAGGTAACATATTAGAGTATAGTGGAGTATAGTGAT
TTACGCAGCCCTGTCGTTTGTTGCTGTTTGTTGTTTATGCTGTTTAGTCT
GCCCTATCCTTACTGCAACCGAGTAGGCCAGTCCCTGAACGCATATTACC
TTTTCGCATCTGTTCGTTTCCTTTTAACCGTCGCCACGAAGATTCGGTAC
AGCTGTTAAGGGGCGCAACATCTTCACGAGAAGTCATCTAGCTGTCGCTC
TCCGAAACGCCTACGACACCCTGCCGGTACACGTGACGACGCTCGAGAAT
CTGGGGAACTTCAAGGAGCTGCTACTAGGAGCGACCAGCAGGGTCCCCCG
CATCACGGCCTGGCGGGCCTTTCGGGTTCAGATGCAGGGTGGTGCTTGCG
TCGTCGAGGTCAAGCGGGCCATGCACCATGAGCGTTGGTTAGGATTCAGC
GCAAACGGGAAGGAGGTGGGGACGGGAGACGGATTTTCTCCGCATAGGCT
GTTCTTCCAAGGCTCTGTGCGCATCGAAAGCTTACCTTCATACAAGCTCA
AGACGGTGGACCCCCATACGATTCACATGATCAAGCAGCGGTTCGAGGCG
TCTCATTCGAGGATGGCGGCGGCGTTCCCGGGCGGTGAGTACACATATGA
AAATGGCTGCTGTTACTGTTAAATTGGCTACCATCTGGGTCCCCTCGGGG
CTACCTTCTGATGTCCTCTACGGCGATTTTCTGTTTATTTTTTTATACAA
TGCTAGAGATACTCAACGTTACTGACTGCCAGCAATAGTAGGTACACGTT
TTAGTCGTGGTGTTGTCAATTCGACAAACTCGTGTGCCACTTCCCTTGAC
GTATTCATTTGTTCCGGTTCTCTCCTCAGATCCAGCCCGAGTCCAGGCGC
TCAAACAAGAGCAAAGGCGGCAACTTCTTCTCCTTGAGAGGAAGGGCCAT
CTTCTGCCTGATCTCCCCGTGGATTGGCTACCCGATATCATACGGGAGGG
ATGCGACGACTCCGACGAAGGCCTGCACGTTGGAGGAAATGACGACGGCG
CCAGCGACACAGACGAAATCCAATCTGACCACGACAGTTCTGAAGACTAA
GACGAACACGGCCACTGTGCTGCGGCCGGGAGAGTGCAGGGGCGGTTGCC
GGTGA
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Coding sequence (CDS) from alignment at chr_00:4130984..4132188+

>Ec-00_003790.1 ID=Ec-00_003790.1|Name=Ec-00_003790.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=345bp|location=Sequence derived from alignment at chr_00:4130984..4132188+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGATCGACCAGATCTTCTCGAGCGGTTCGAGGCGTCTCATTCGAGGATG
GCGGCGGCGTTCCCGGGCGATCCAGCCCGAGTCCAGGCGCTCAAACAAGA
GCAAAGGCGGCAACTTCTTCTCCTTGAGAGGAAGGGCCATCTTCTGCCTG
ATCTCCCCGTGGATTGGCTACCCGATATCATACGGGAGGGATGCGACGAC
TCCGACGAAGGCCTGCACGTTGGAGGAAATGACGACGGCGCCAGCGACAC
AGACGAAATCCAATCTGACCACGACAGTTCTGAAGACTAAGACGAACACG
GCCACTGTGCTGCGGCCGGGAGAGTGCAGGGGCGGTTGCCGGTGA
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Synonyms
The feature 'Ec-00_003790.1' has the following synonyms
Synonym
Esi0258_0013
Esi_0258_0013