Ec-00_003600.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_003600.1
Unique NameEc-00_003600.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length233
Homology
BLAST of Ec-00_003600.1 vs. uniprot
Match: D7FZH9_ECTSI (ATP-dependent DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZH9_ECTSI)

HSP 1 Score: 385 bits (988), Expect = 5.230e-128
Identity = 197/229 (86.03%), Postives = 208/229 (90.83%), Query Frame = 1
Query:   10 ISPPISTLRT-AFPGKVVVLAGDTRQLPPVVPNGGEAETTAASLLSSAYYRDNVEIFHLSKTMRNKDDPRFSKMVDDIGNGVSDIDEAGLTTITGVRTEQALDVVIDFGFPDDVLQNPSACAKRGIISTHNDSVARVNAAVLARMNGETCTLQGRTMLDHEHLDPDVDDFFRMSQFLNQMEPSSVPSHDINLKVGVVVLLCRNLSIDDCLTNGTKVVLSRFNPLRKKFR 693
            + P  S+  T AFPGKVVVLAGDTRQLPPVVPNGGEAETTAAS+LSSAYYRDNVEIFHLSKTMRNKDDPR+SKMVDDIG+GVSDIDEAGL TITGVRTE+ALDV IDF FPDDVLQNPSACAKRGIISTHNDSVARVNAAVLAR+NGET TLQGRTMLDH+HLDPDVDDFFRMSQFLNQME S VPSHDINL VGVVV+LCRNLSIDDCLTNGTKVV+    P   K +
Sbjct:  316 VPPTASSPSTGAFPGKVVVLAGDTRQLPPVVPNGGEAETTAASVLSSAYYRDNVEIFHLSKTMRNKDDPRYSKMVDDIGDGVSDIDEAGLITITGVRTEEALDVAIDFVFPDDVLQNPSACAKRGIISTHNDSVARVNAAVLARVNGETYTLQGRTMLDHKHLDPDVDDFFRMSQFLNQMEHSGVPSHDINLNVGVVVMLCRNLSIDDCLTNGTKVVVVAIQPFTLKLQ 544          
BLAST of Ec-00_003600.1 vs. uniprot
Match: D7FRZ0_ECTSI (ATP-dependent DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRZ0_ECTSI)

HSP 1 Score: 338 bits (867), Expect = 1.800e-116
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 1
Query:  193 MRNKDDPRFSKMVDDIGNGVSDIDEAGLTTITGVRTEQALDVVIDFGFPDDVLQNPSACAKRGIISTHNDSVARVNAAVLARMNGETCTLQGRTMLDHEHLDPDVDDFFRMSQFLNQMEPSSVPSHDINLKVGVVVLLCRNLSIDDCLTNGTKVVLSRFNPLRKKFRH 696
            MRNKDDPRFSKMVDDIGNGVSDIDEAGLTTITGVRTEQALDVVIDFGFPDDVLQNPSACAKRGIISTHNDSVARVNAAVLARMNGETCTLQGRTMLDHEHLDPDVDDFFRMSQFLNQMEPSSVPSHDINLKVGVVVLLCRNLSIDDCLTNGTKVVLSRFNPLRKKFRH
Sbjct:    1 MRNKDDPRFSKMVDDIGNGVSDIDEAGLTTITGVRTEQALDVVIDFGFPDDVLQNPSACAKRGIISTHNDSVARVNAAVLARMNGETCTLQGRTMLDHEHLDPDVDDFFRMSQFLNQMEPSSVPSHDINLKVGVVVLLCRNLSIDDCLTNGTKVVLSRFNPLRKKFRH 168          
BLAST of Ec-00_003600.1 vs. uniprot
Match: A0A6H5KSD8_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSD8_9PHAE)

HSP 1 Score: 268 bits (685), Expect = 1.910e-83
Identity = 144/221 (65.16%), Postives = 169/221 (76.47%), Query Frame = 1
Query:    1 MSFISPPI-STLRTAFPGKVVVLAGDTRQLPPVVPNGGEAETTAASLLSSAYYRDNVEIFHLSKTMRNKDDPRFSKMVDDIGNGVSDIDEAGLTTITGVRTEQALDVVIDFGFPDDVLQNPSACAKRGIISTHNDSVARVNAAVLARMNGETCTLQGRTMLDHEHLDPDVDDFFRMSQFLNQMEPSSVPSHDINLKVGVVVLLCRNLSIDDCLTNGTKVVL 660
            + F SP I +    AFP KV V+AGDTRQLPPVV NGGE+ETTAAS+LSSA+YRDNV++FHL+ TMRNKDDP FSKMVD IG+G + +D  GL T+TGV T  +L+  IDF FP  VLQNP+ACAKRGIISTHNDSVARVNAAVL+R+ G+  TL+GRTMLDHE +DPD                S +PSH+I LKVGVVV LCRN+SID  LTNGTKVV+
Sbjct:  268 LHFASPSIFAHFLPAFPKKVFVIAGDTRQLPPVVANGGESETTAASVLSSAFYRDNVDVFHLNTTMRNKDDPDFSKMVDAIGDGEAPVDADGLVTMTGVDTALSLESAIDFVFPYYVLQNPTACAKRGIISTHNDSVARVNAAVLSRVQGDMFTLRGRTMLDHEQMDPD----------------SGIPSHEIKLKVGVVVRLCRNMSIDARLTNGTKVVV 472          
BLAST of Ec-00_003600.1 vs. uniprot
Match: UPI00103A3A51 (uncharacterized protein LOC114364057 n=1 Tax=Ostrinia furnacalis TaxID=93504 RepID=UPI00103A3A51)

HSP 1 Score: 124 bits (310), Expect = 9.520e-29
Identity = 76/221 (34.39%), Postives = 117/221 (52.94%), Query Frame = 1
Query:   43 FPGKVVVLAGDTRQLPPVVPNGGEAETTAASLLSSAYYRDNVEIFHLSKTMRNKDDPRFSKMVDDIGNGV----------SDIDEAGLTTITGVRTEQALDVVIDFGFPDDVLQNPSACAKRGIISTHNDSVARVNAAVLARMNGETCTLQGRTMLDHEHLDPDVDDFFRMSQFLNQMEPSSVPSHDINLKVGVVVLLCRNLSIDDCLTNGTKVVLSRFNP 675
            F GK+V+ AGD RQ+PPVV             + S+   + ++IF+LS + RN+DDP +S  +  +G+            S ++   LT+     T+  L+ +IDF F   V+  P  CA R I++THN +V  +N+ VL R+  E         +  E+     D+ F  +  LN+++P  VP HD+ LKVG V ++ RNLS  D L NGTKV++ +  P
Sbjct:  755 FGGKIVIFAGDFRQIPPVVVRAKSNSDIINCSVKSSPIWEQIKIFNLSTSQRNRDDPEYSDFLLKLGSNQLPVQTLKVNRSVLNLVDLTSHLSYVTD--LNDLIDFVFSHVVIVEPDTCAGRAILTTHNQNVREINSIVLDRVESELLHFYSIDKVVSEN----TDEIFLGADALNKLQPKGVPEHDLKLKVGCVCMIIRNLSFSDRLVNGTKVIVVKTTP 969          
BLAST of Ec-00_003600.1 vs. uniprot
Match: UPI001ED89BAA (ATP-dependent DNA helicase PIF1-like n=2 Tax=Ischnura elegans TaxID=197161 RepID=UPI001ED89BAA)

HSP 1 Score: 120 bits (301), Expect = 9.340e-28
Identity = 81/223 (36.32%), Postives = 120/223 (53.81%), Query Frame = 1
Query:   22 ISTLRTAFPGKVVVLAGDTRQLPPVVPNGGEAETTAASLLSSAYYRDNVEIFHLSKTMRNKDDPRFSKMVDDIGNG-VSDIDEAGLTTIT--GVRTEQALDVVIDFGFPDDVLQNPSACAKRGIISTHNDSVARVNAAVLARMNGETCTLQGRTMLDHEHLDP---DVDDFFRMSQFLNQMEPSSVPSHDINLKVGVVVLLCRNLSIDDCLTNGTKVVLSRFN 672
            I  +  AF GKVVVLAGD RQ+PP++P+G +A+   ASL SS  +   ++   L   +R++DD  +S+ V  +G   V  +      TI    +    +L  +IDF +P DVL NP+ C  R I+S  N +++ +N  VL  + GE   L        +   P    VD+    S  LN +  S VP H + LKVG V +L RN+S +D L NGTKV++ + +
Sbjct:  253 ICQVEAAFGGKVVVLAGDFRQIPPIIPDGSKADIIGASLKSSELWPIIIKK-KLRSILRSRDDRAYSEFVLAVGEDRVPTVAMGEYQTIPLGSISFTTSLQELIDFVYPADVLSNPALCCNRAILSGTNHNISEINRFVLDMIPGEIVRL-----CSADSTPPCAGAVDNTLIHSDVLNAISHSGVPDHILELKVGCVAILIRNISFEDRLVNGTKVIVEKIS 469          
BLAST of Ec-00_003600.1 vs. uniprot
Match: UPI001ED8A18C (ATP-dependent DNA helicase PIF1-like n=1 Tax=Ischnura elegans TaxID=197161 RepID=UPI001ED8A18C)

HSP 1 Score: 119 bits (297), Expect = 3.120e-27
Identity = 81/223 (36.32%), Postives = 120/223 (53.81%), Query Frame = 1
Query:   22 ISTLRTAFPGKVVVLAGDTRQLPPVVPNGGEAETTAASLLSSAYYRDNVEIFHLSKTMRNKDDPRFSKMVDDIGNG-VSDIDEAGLTTIT--GVRTEQALDVVIDFGFPDDVLQNPSACAKRGIISTHNDSVARVNAAVLARMNGETCTLQGRTMLDHEHLDP---DVDDFFRMSQFLNQMEPSSVPSHDINLKVGVVVLLCRNLSIDDCLTNGTKVVLSRFN 672
            I  +  AF GKVVVLAGD RQ+PP++P+G +A+   ASL SS  +   ++   L   +R++DD  +SK V  +G   V  +      TI    +    +L  +IDF +P DVL NP+ C  R I+S  N +++ +N  VL  + GE   L        +   P    VD+    +  LN +  S VP H + LKVG V +L RN+S +D L NGTKV++ + +
Sbjct:  253 ICQVGAAFGGKVVVLAGDFRQIPPIIPDGSKADIIDASLKSSVLWPIIIKK-KLRSILRSRDDRAYSKFVLAVGEDRVPTVAMGEYQTIPLGSISFTTSLQELIDFVYPADVLCNPALCCNRAILSGTNHNISEINRFVLDMIPGEIVRL-----CSADSTPPCAGAVDNTLIHTDVLNAISHSGVPDHILELKVGCVAILIRNISFEDRLVNGTKVIIEKIS 469          
BLAST of Ec-00_003600.1 vs. uniprot
Match: UPI001E68D7A0 (ATP-dependent DNA helicase PIF1-like n=1 Tax=Maniola jurtina TaxID=191418 RepID=UPI001E68D7A0)

HSP 1 Score: 113 bits (283), Expect = 5.530e-26
Identity = 73/219 (33.33%), Postives = 118/219 (53.88%), Query Frame = 1
Query:   43 FPGKVVVLAGDTRQLPPVVPNGGE-AETTAASLLSSAYYRDNVEIFHLSKTMRNKDDPRFSKMVDDIG-NGVSDID------EAGLTTITGVRTEQALDVVIDFGFPDDVLQNPSACAKRGIISTHNDSVARVNAAVLARMNGETCTLQGRTMLDHEHLDPDVDDFFRMSQFLNQMEPSSVPSHDINLKVGVVVLLCRNLSIDDCLTNGTKVVLSRFNP 675
            F GK+++ AGD RQ+PPVV +    ++   AS+ SS  ++  ++ F L  + R +DD  FS+ +  +G N ++ +          L  ++ +     LD +IDF +P+ +L  P  C  R I+STHN SV  +NA +L  +  +         +D E +  + D  F     LN+M+P  +P HD+ LKVG V ++ RNL+  D L NGTKV++   +P
Sbjct:   63 FGGKIIIFAGDYRQIPPVVVDAKHNSDVFNASVKSSPIWQK-LKTFSLVTSQRCRDDSEFSEFLLKLGSNQLTSVTLHTNRTVENLVNLSMISFVSKLDDLIDFVYPNVILTEPDVCVHRAILSTHNASVYEINAKILELLPEDPLHFYS---ID-EVVSDNADQIFLGVDALNRMQPKGIPEHDLTLKVGCVCMIIRNLNFSDKLVNGTKVIVVNTSP 276          
BLAST of Ec-00_003600.1 vs. uniprot
Match: A0A6H5GVM8_9HEMI (ATP-dependent DNA helicase (Fragment) n=1 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5GVM8_9HEMI)

HSP 1 Score: 115 bits (288), Expect = 8.860e-26
Identity = 76/221 (34.39%), Postives = 116/221 (52.49%), Query Frame = 1
Query:   22 ISTLRTAFPGKVVVLAGDTRQLPPVVPNGGEAETTAASLLSSAYYRDNVEIFHLSKTMRNKDDPRFSKMVDDIGNG----VSDIDEAGLTTITGVRTEQALDVVIDFGFP--DDVLQNPSACAKRGIISTHNDSVARVNAAVLARMNGETCTLQGRTMLDHEHLDPDVDD--FFRMSQFLNQMEPSSVPSHDINLKVGVVVLLCRNLSIDDCLTNGTKVVL 660
            I+     F GK++V AGD RQ+PP+VP+    +   AS+ SS ++ + + +F LS   R   D  FS+ +  +G G    V   DE  L  +  ++T   L+ +IDF +P  DD ++NP     R ++S  N ++  +N  VL R  G+   L        +    DVDD  F  + +FL+ +    VP HD+ LK+G V  + RNLS D  L NGTKV++
Sbjct: 1808 ITQCELPFGGKIIVFAGDFRQIPPIVPSNTPVDVVNASVKSSPFWAE-LNVFTLSTAQRTAGDELFSRFLLAVGEGRVEPVRVADET-LIPLRNIQTVSNLNDLIDFVYPPNDDSIENPDLSRSRTVLSGTNAAIDDINRTVLDRCPGDVIHLYSA-----DRTTSDVDDPRFLPLPEFLHSLTHPGVPDHDLQLKIGSVCTVLRNLSFDCGLVNGTKVIV 2021          
BLAST of Ec-00_003600.1 vs. uniprot
Match: UPI001ED8867E (uncharacterized protein LOC124173554 n=1 Tax=Ischnura elegans TaxID=197161 RepID=UPI001ED8867E)

HSP 1 Score: 115 bits (287), Expect = 1.170e-25
Identity = 75/222 (33.78%), Postives = 118/222 (53.15%), Query Frame = 1
Query:   34 RTAFPGKVVVLAGDTRQLPPVVPNGGEAETTAASLLSSAYYRDNVEIFHLSKTMRNKDDPRFSKMVDDIGNGVSDIDEAGLTTITGVR---TEQALDVVIDFGFPDDVLQNPSACAKRGIISTHNDSVARVNAAVLARMNGETCTLQGRTML------DHEHLDPDVDDFFRMSQFLNQMEPSSVPSHDINLKVGVVVLLCRNLSIDDCLTNGTKVVLSRFN 672
            R AF GKV+VLAGD RQ+PP++P+G + +   ASL SS  +  N+    L   +R+++D  ++  V ++G         G+     +R      +L+ +++F +P DVL NP  C +R I+S  N ++A +NAAVL  +  E   L            D+ H+  DV         LN +  + VP H + LKVG +V+L RN+S  D L NGTK+ + + +
Sbjct: 1216 RQAFGGKVMVLAGDFRQIPPIIPDGAKVDIIEASLKSSQLW-PNIIKKRLRTILRSREDQDYTDFVLEVGENKVPSISIGIYRPIPLRMIINATSLEDLMNFVYPRDVLFNPEQCVRRAILSGTNLNIAEINAAVLRMLPNEAVRLCSADSTPCAGPEDNVHIHTDV---------LNNVSHTGVPDHILELKVGCMVILIRNISFTDGLVNGTKLFVEKIS 1427          
BLAST of Ec-00_003600.1 vs. uniprot
Match: UPI001E688A66 (uncharacterized protein LOC123868181 n=2 Tax=Maniola jurtina TaxID=191418 RepID=UPI001E688A66)

HSP 1 Score: 113 bits (282), Expect = 5.270e-25
Identity = 73/219 (33.33%), Postives = 118/219 (53.88%), Query Frame = 1
Query:   43 FPGKVVVLAGDTRQLPPVVPNGGE-AETTAASLLSSAYYRDNVEIFHLSKTMRNKDDPRFSKMVDDIG-NGVSDID------EAGLTTITGVRTEQALDVVIDFGFPDDVLQNPSACAKRGIISTHNDSVARVNAAVLARMNGETCTLQGRTMLDHEHLDPDVDDFFRMSQFLNQMEPSSVPSHDINLKVGVVVLLCRNLSIDDCLTNGTKVVLSRFNP 675
            F GK+++ AGD RQ+PPVV +    ++   AS+ SS  ++  ++ F L  + R +DD  FS+ +  +G N ++ +          L  ++ +     LD +IDF +P+ +L  P  C  R I+STHN SV  +NA +L  +  +         +D E +  + D  F     LN+M+P  +P HD+ LKVG V ++ RNL+  D L NGTKV++   +P
Sbjct:  919 FGGKIIIFAGDYRQIPPVVVDAKHNSDVFNASVKSSPIWQK-LKTFSLVTSQRCRDDSEFSEFLLKLGSNQLTSVTLHTNRTVENLVNLSMISFVSKLDDLIDFVYPNVILTEPDVCVHRAILSTHNASVYEINAKILELLPEDPLHFYS---ID-EVVSDNADQIFLGVDALNRMQPKGIPEHDLTLKVGCVCMVIRNLNFSDKLVNGTKVIVVNTSP 1132          
The following BLAST results are available for this feature:
BLAST of Ec-00_003600.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZH9_ECTSI5.230e-12886.03ATP-dependent DNA helicase n=1 Tax=Ectocarpus sili... [more]
D7FRZ0_ECTSI1.800e-116100.00ATP-dependent DNA helicase n=1 Tax=Ectocarpus sili... [more]
A0A6H5KSD8_9PHAE1.910e-8365.16ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
UPI00103A3A519.520e-2934.39uncharacterized protein LOC114364057 n=1 Tax=Ostri... [more]
UPI001ED89BAA9.340e-2836.32ATP-dependent DNA helicase PIF1-like n=2 Tax=Ischn... [more]
UPI001ED8A18C3.120e-2736.32ATP-dependent DNA helicase PIF1-like n=1 Tax=Ischn... [more]
UPI001E68D7A05.530e-2633.33ATP-dependent DNA helicase PIF1-like n=1 Tax=Manio... [more]
A0A6H5GVM8_9HEMI8.860e-2634.39ATP-dependent DNA helicase (Fragment) n=1 Tax=Nesi... [more]
UPI001ED8867E1.170e-2533.78uncharacterized protein LOC124173554 n=1 Tax=Ischn... [more]
UPI001E688A665.270e-2533.33uncharacterized protein LOC123868181 n=2 Tax=Manio... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:3594761..3595459 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score388.3
Seed ortholog evalue2.6e-105
Seed eggNOG ortholog2880.D7FZH9
Length699
Hectar predicted targeting categoryother localisation
Gene idEc-00_003600.1
EggNOG free text desc.G-quadruplex DNA unwinding
EggNOG OGsCOG0507@1,KOG0987@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_003600Ec-00_003600Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 3594761..3595459 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003600.1.1Ec-00_003600.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3594761..3595459 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003600.1CDS:Ec-00_003600.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 3594761..3595459 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003600.1Ec-00_003600.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 3594761..3595459 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_003600.1 ID=Ec-00_003600.1|Name=Ec-00_003600.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=233bp
MSFISPPISTLRTAFPGKVVVLAGDTRQLPPVVPNGGEAETTAASLLSSA
YYRDNVEIFHLSKTMRNKDDPRFSKMVDDIGNGVSDIDEAGLTTITGVRT
EQALDVVIDFGFPDDVLQNPSACAKRGIISTHNDSVARVNAAVLARMNGE
TCTLQGRTMLDHEHLDPDVDDFFRMSQFLNQMEPSSVPSHDINLKVGVVV
LLCRNLSIDDCLTNGTKVVLSRFNPLRKKFRH*
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spliced messenger RNA

>Ec-00_003600.1 ID=Ec-00_003600.1|Name=Ec-00_003600.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=699bp|location=Sequence derived from alignment at chr_00:3594761..3595459+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGTTCATCTCCCCACCGATCTCTACTCTTCGTACAGCCTTTCCTGG
AAAAGTGGTCGTCCTAGCTGGTGATACGAGACAACTGCCACCTGTTGTAC
CAAATGGTGGCGAAGCCGAGACCACCGCGGCATCCCTCCTGTCGAGCGCA
TACTACCGCGACAACGTTGAGATATTTCATCTCAGCAAAACAATGCGCAA
CAAGGACGACCCCCGATTCTCTAAAATGGTCGATGACATAGGTAATGGCG
TTTCTGATATTGATGAAGCCGGGTTGACAACTATTACTGGCGTGCGGACC
GAACAAGCTTTGGATGTCGTCATCGATTTCGGTTTTCCTGATGACGTCCT
CCAAAACCCCTCTGCTTGTGCCAAGCGCGGCATCATTTCCACCCACAATG
ATTCCGTCGCTCGTGTGAATGCGGCTGTATTGGCGAGAATGAATGGTGAA
ACGTGCACCTTGCAAGGTAGAACGATGCTCGATCACGAGCACCTCGACCC
AGACGTCGATGATTTCTTCCGTATGTCTCAGTTTTTGAACCAGATGGAGC
CCAGCAGCGTCCCGTCTCACGACATCAACCTCAAAGTAGGGGTCGTCGTA
TTGCTTTGCAGGAATTTGTCCATAGATGACTGCCTCACGAATGGCACCAA
AGTTGTTTTGTCGCGATTCAACCCTTTACGTAAAAAGTTCAGACATTAG
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protein sequence of Ec-00_003600.1

>Ec-00_003600.1 ID=Ec-00_003600.1|Name=Ec-00_003600.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=233bp
MSFISPPISTLRTAFPGKVVVLAGDTRQLPPVVPNGGEAETTAASLLSSA
YYRDNVEIFHLSKTMRNKDDPRFSKMVDDIGNGVSDIDEAGLTTITGVRT
EQALDVVIDFGFPDDVLQNPSACAKRGIISTHNDSVARVNAAVLARMNGE
TCTLQGRTMLDHEHLDPDVDDFFRMSQFLNQMEPSSVPSHDINLKVGVVV
LLCRNLSIDDCLTNGTKVVLSRFNPLRKKFRH*
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mRNA from alignment at chr_00:3594761..3595459+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_003600.1 ID=Ec-00_003600.1|Name=Ec-00_003600.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=699bp|location=Sequence derived from alignment at chr_00:3594761..3595459+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTCGTTCATCTCCCCACCGATCTCTACTCTTCGTACAGCCTTTCCTGG AAAAGTGGTCGTCCTAGCTGGTGATACGAGACAACTGCCACCTGTTGTAC CAAATGGTGGCGAAGCCGAGACCACCGCGGCATCCCTCCTGTCGAGCGCA TACTACCGCGACAACGTTGAGATATTTCATCTCAGCAAAACAATGCGCAA CAAGGACGACCCCCGATTCTCTAAAATGGTCGATGACATAGGTAATGGCG TTTCTGATATTGATGAAGCCGGGTTGACAACTATTACTGGCGTGCGGACC GAACAAGCTTTGGATGTCGTCATCGATTTCGGTTTTCCTGATGACGTCCT CCAAAACCCCTCTGCTTGTGCCAAGCGCGGCATCATTTCCACCCACAATG ATTCCGTCGCTCGTGTGAATGCGGCTGTATTGGCGAGAATGAATGGTGAA ACGTGCACCTTGCAAGGTAGAACGATGCTCGATCACGAGCACCTCGACCC AGACGTCGATGATTTCTTCCGTATGTCTCAGTTTTTGAACCAGATGGAGC CCAGCAGCGTCCCGTCTCACGACATCAACCTCAAAGTAGGGGTCGTCGTA TTGCTTTGCAGGAATTTGTCCATAGATGACTGCCTCACGAATGGCACCAA AGTTGTTTTGTCGCGATTCAACCCTTTACGTAAAAAGTTCAGACATTAG
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Coding sequence (CDS) from alignment at chr_00:3594761..3595459+

>Ec-00_003600.1 ID=Ec-00_003600.1|Name=Ec-00_003600.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=699bp|location=Sequence derived from alignment at chr_00:3594761..3595459+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGTCGTTCATCTCCCCACCGATCTCTACTCTTCGTACAGCCTTTCCTGG
AAAAGTGGTCGTCCTAGCTGGTGATACGAGACAACTGCCACCTGTTGTAC
CAAATGGTGGCGAAGCCGAGACCACCGCGGCATCCCTCCTGTCGAGCGCA
TACTACCGCGACAACGTTGAGATATTTCATCTCAGCAAAACAATGCGCAA
CAAGGACGACCCCCGATTCTCTAAAATGGTCGATGACATAGGTAATGGCG
TTTCTGATATTGATGAAGCCGGGTTGACAACTATTACTGGCGTGCGGACC
GAACAAGCTTTGGATGTCGTCATCGATTTCGGTTTTCCTGATGACGTCCT
CCAAAACCCCTCTGCTTGTGCCAAGCGCGGCATCATTTCCACCCACAATG
ATTCCGTCGCTCGTGTGAATGCGGCTGTATTGGCGAGAATGAATGGTGAA
ACGTGCACCTTGCAAGGTAGAACGATGCTCGATCACGAGCACCTCGACCC
AGACGTCGATGATTTCTTCCGTATGTCTCAGTTTTTGAACCAGATGGAGC
CCAGCAGCGTCCCGTCTCACGACATCAACCTCAAAGTAGGGGTCGTCGTA
TTGCTTTGCAGGAATTTGTCCATAGATGACTGCCTCACGAATGGCACCAA
AGTTGTTTTGTCGCGATTCAACCCTTTACGTAAAAAGTTCAGACATTAG
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Synonyms
The feature 'Ec-00_003600.1' has the following synonyms
Synonym
Esi0225_0015
Esi_0225_0015