Ec-00_000290.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_000290.1
Unique NameEc-00_000290.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length96
Homology
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BLAST of Ec-00_000290.1 vs. uniprot
Match: D7FHA8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHA8_ECTSI)

HSP 1 Score: 199 bits (507), Expect = 4.880e-65
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 1 
Query:    1 MAEHVQLVFSPMFGGSAETAATPAVHSGRQSGGANRGFTAGISVVWSHAIIGDQQLNFSFGMGRADPATNPWCRMSDGFWEPGWMKCAAFMMLES 285
            MAEHVQLVFSPMFGGSAETAATPAVHSGRQSGGANRGFTAGISVVWSHAIIGDQQLNFSFGMGRADPATNPWCRMSDGFWEPGWMKCAAFMMLES
Sbjct:    1 MAEHVQLVFSPMFGGSAETAATPAVHSGRQSGGANRGFTAGISVVWSHAIIGDQQLNFSFGMGRADPATNPWCRMSDGFWEPGWMKCAAFMMLES 95
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BLAST of Ec-00_000290.1 vs. uniprot
Match: D8LNI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNI2_ECTSI)

HSP 1 Score: 191 bits (485), Expect = 3.410e-60
Identity = 93/95 (97.89%), Postives = 93/95 (97.89%), Query Frame = 1 
Query:    1 MAEHVQLVFSPMFGGSAETAATPAVHSGRQSGGANRGFTAGISVVWSHAIIGDQQLNFSFGMGRADPATNPWCRMSDGFWEPGWMKCAAFMMLES 285
            MAEHVQLVFSPMFGGSAETAATPAVHSGRQSGGANRGFTAGISVVWSHAIIGDQQLNFSFGMGRADPATNPWCRMS GFWEPG MKCAAFMMLES
Sbjct:   34 MAEHVQLVFSPMFGGSAETAATPAVHSGRQSGGANRGFTAGISVVWSHAIIGDQQLNFSFGMGRADPATNPWCRMSYGFWEPGGMKCAAFMMLES 128
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BLAST of Ec-00_000290.1 vs. uniprot
Match: D7FLB4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLB4_ECTSI)

HSP 1 Score: 191 bits (485), Expect = 8.100e-57
Identity = 93/95 (97.89%), Postives = 93/95 (97.89%), Query Frame = 1 
Query:    1 MAEHVQLVFSPMFGGSAETAATPAVHSGRQSGGANRGFTAGISVVWSHAIIGDQQLNFSFGMGRADPATNPWCRMSDGFWEPGWMKCAAFMMLES 285
            MAEHVQLVFSPMFGGSAETAATPAVHSGRQSGGANRGFTAGISVVWSHAIIGDQQLNFSFGMGRADPATNPWCRMS GFWEPG MKCAAFMMLES
Sbjct:  206 MAEHVQLVFSPMFGGSAETAATPAVHSGRQSGGANRGFTAGISVVWSHAIIGDQQLNFSFGMGRADPATNPWCRMSYGFWEPGGMKCAAFMMLES 300
[Close]
BLAST of Ec-00_000290.1 vs. uniprot
Match: D7G1E3_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1E3_ECTSI)

HSP 1 Score: 182 bits (463), Expect = 3.900e-55
Identity = 88/91 (96.70%), Postives = 89/91 (97.80%), Query Frame = 1 
Query:    1 MAEHVQLVFSPMFGGSAETAATPAVHSGRQSGGANRGFTAGISVVWSHAIIGDQQLNFSFGMGRADPATNPWCRMSDGFWEPGWMKCAAFM 273
            MAEHVQLVF+PMFGGSAETAATPAVHSGRQSGGANRGFTAGISVVWSHAIIGDQQLNFSFGMGRADPATNPWCRMS GFWEPG MKCAAFM
Sbjct:  208 MAEHVQLVFAPMFGGSAETAATPAVHSGRQSGGANRGFTAGISVVWSHAIIGDQQLNFSFGMGRADPATNPWCRMSYGFWEPGGMKCAAFM 298
The following BLAST results are available for this feature:
BLAST of Ec-00_000290.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FHA8_ECTSI4.880e-65100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LNI2_ECTSI3.410e-6097.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FLB4_ECTSI8.100e-5797.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G1E3_ECTSI3.900e-5596.70Uncharacterized protein n=3 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:451533..453271 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length288
Hectar predicted targeting categoryother localisation
Gene idEc-00_000290.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_000290Ec-00_000290Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 451533..454852 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000290.1.1Ec-00_000290.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 451533..451544 +
Ec-00_000290.1.2Ec-00_000290.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 452273..452534 +
Ec-00_000290.1.3Ec-00_000290.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 453258..453271 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000290.1CDS:Ec-00_000290.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 451533..451544 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_000290.1Ec-00_000290.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 451533..453271 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_000290.1 ID=Ec-00_000290.1|Name=Ec-00_000290.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=96bp
MAEHVQLVFSPMFGGSAETAATPAVHSGRQSGGANRGFTAGISVVWSHAI
IGDQQLNFSFGMGRADPATNPWCRMSDGFWEPGWMKCAAFMMLES*
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spliced messenger RNA

>Ec-00_000290.1 ID=Ec-00_000290.1|Name=Ec-00_000290.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=288bp|location=Sequence derived from alignment at chr_00:451533..453271+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGAACATGTGCAGCTGGTTTTCTCCCCCATGTTCGGCGGCAGCGC
GGAGACCGCGGCGACTCCTGCAGTTCACAGCGGCAGGCAGTCCGGAGGCG
CAAACCGAGGTTTTACCGCCGGCATCTCCGTTGTCTGGAGTCACGCCATC
ATCGGCGACCAACAGCTGAACTTCTCGTTTGGGATGGGGAGGGCGGACCC
TGCCACGAATCCGTGGTGCCGGATGTCCGACGGGTTCTGGGAGCCCGGTT
GGATGAAGTGCGCGGCGTTCATGATGCTGGAGAGTTAG
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protein sequence of Ec-00_000290.1

>Ec-00_000290.1 ID=Ec-00_000290.1|Name=Ec-00_000290.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=96bp
MAEHVQLVFSPMFGGSAETAATPAVHSGRQSGGANRGFTAGISVVWSHAI
IGDQQLNFSFGMGRADPATNPWCRMSDGFWEPGWMKCAAFMMLES*
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mRNA from alignment at chr_00:451533..453271+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_000290.1 ID=Ec-00_000290.1|Name=Ec-00_000290.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1739bp|location=Sequence derived from alignment at chr_00:451533..453271+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGCGGAACATGTGAGTTGAATTTTTGTGTCCCTGTCAGAGAGAGTGTT
GCAAAACACATACATACGCACGTCTCGTTATAATCTAAGCTTGTGCTTTT
GTGTTTCTTGCGTAGATGCGGGTGCATTTTTTTGTGGTGTTGACTGAAAT
TTTGCCGCCGAAGTCCTCGAATCGTGAGTTTCCCACCATCCGGTCGGTCT
ATAATATAGACGCACCACCTTCCGTACGTGGCACAATATGCCACAACCCC
TGGGCCGATTATAAAAAGCTAACCTCAGTCCAGGACCATGAACATGCAGA
AATGAAACGCCACGTTTTCGGAGAGCTCTCGACGAGATGGTTCATTCCGC
CGTTTTGGTTGGGCCAGTTACTGTGTGGCAAATATCGATATTGTTCACAG
CAGCAGGGGGTGCGGTATCTTGTGTCACCTACGGCGGTACATAAGGGGCT
TGTAGTCGTGTGGAGGTGGAACCACAACTACTAACTTATATGTATCCTTG
GTTACCCAGGATCGTCGTACATGCCGACTGGTGACACGAGTAGGAGTCTT
GTGTACATTGATGTTTTGTGCTCGCCGTTCAGCCCGAGGATGATTGATGG
TTGTGTTTGCACCGACAAGCGTGGTTTCAGCATTCCCATCGTCGCAGACT
AAATAGCATAGAACCCACGACTTCTCTCTCACGCGTCGCTGGATTTTCCG
CCCCCGATCTTGTGCTATACGGACGATATGCATCTCGCAGGTGCAGCTGG
TTTTCTCCCCCATGTTCGGCGGCAGCGCGGAGACCGCGGCGACTCCTGCA
GTTCACAGCGGCAGGCAGTCCGGAGGCGCAAACCGAGGTTTTACCGCCGG
CATCTCCGTTGTCTGGAGTCACGCCATCATCGGCGACCAACAGCTGAACT
TCTCGTTTGGGATGGGGAGGGCGGACCCTGCCACGAATCCGTGGTGCCGG
ATGTCCGACGGGTTCTGGGAGCCCGGTTGGATGAAGTGCGCGGCGTTCAT
GAGTGAGTGCTGTGTCTCTGTTCAGATATTTTGGTGGTCTTGTTGACGAC
TTGCAATGGCACAAGGATTATGGCTAGGCCATGACGTATACCGGCTGTGC
TGTGATCGTAATATATACTATTTCTCCCGTACTAAGACTGACGTGAAACA
CACTACATTTCGCCTCGATGTCGAACATGGACGTTCACGCCACGCAACAA
GCCTACCACTTTCGTAGGAGTCGGACAAACGACCTGCTCTAATCGCACAT
GCGTCCGGAAATAGACTTACCTTGCTTGTGGCGGGCTGTTTATTGTGGCG
ACTAGTACACGAGCGAGTATCAATACTGTCGGGTGACTCATTACAGATGT
CTCGCTGCAGCGCTACACCCGCGATTCACCGCCGTGGAACGTAACGTGAT
GCGTTGCGCCGTCTGCATTTTCGGGGGGGGGGGGGTGTACTAGGTATCAT
GCATGCCGTTGTCGTTAAGACCATAGACCTCGCATGGGAGGGGGAGGGGG
GGTGTTCCGATGTGGCAGCTACATTCTGTTTGTTGTCTCCTGGGTCGGCA
AAAGGTTCTTAACAGTTGTGCCCTCTTTGTCCGTGCGTGCCTGACGAAGT
CCGTTCAAAACCGTCTGTCATTTATGTCTTAACGCCCTCCAAACACAGAG
ACCTTTCGGCCCGCGCTCCAGTCCGCACGTGGCACAAGGCCGTGAGGCTG
GCCGTCATGATCTACATCCTCTCAGTGCTGGAGAGTTAG
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Coding sequence (CDS) from alignment at chr_00:451533..453271+

>Ec-00_000290.1 ID=Ec-00_000290.1|Name=Ec-00_000290.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=288bp|location=Sequence derived from alignment at chr_00:451533..453271+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGCGGAACATGTGCAGCTGGTTTTCTCCCCCATGTTCGGCGGCAGCGC
GGAGACCGCGGCGACTCCTGCAGTTCACAGCGGCAGGCAGTCCGGAGGCG
CAAACCGAGGTTTTACCGCCGGCATCTCCGTTGTCTGGAGTCACGCCATC
ATCGGCGACCAACAGCTGAACTTCTCGTTTGGGATGGGGAGGGCGGACCC
TGCCACGAATCCGTGGTGCCGGATGTCCGACGGGTTCTGGGAGCCCGGTT
GGATGAAGTGCGCGGCGTTCATGATGCTGGAGAGTTAG
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Synonyms
The feature 'Ec-00_000290.1' has the following synonyms
Synonym
Esi1069_0001
Esi_1069_0001