Ec-00_003040.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_003040.1
Unique NameEc-00_003040.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length110
Homology
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BLAST of Ec-00_003040.1 vs. uniprot
Match: D7FNW6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNW6_ECTSI)

HSP 1 Score: 213 bits (541), Expect = 8.830e-70
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 1 
Query:    1 MAELNSLLPILTRADGMSRDNSSSFGALGVVLVKGVLAYILLRLGRSQDGLEVLEPVVGILAENPGLLRQVMCWHLSRCILLALTKLESLWAAFEASHRTMPVSGIVQQ 327
            MAELNSLLPILTRADGMSRDNSSSFGALGVVLVKGVLAYILLRLGRSQDGLEVLEPVVGILAENPGLLRQVMCWHLSRCILLALTKLESLWAAFEASHRTMPVSGIVQQ
Sbjct:    1 MAELNSLLPILTRADGMSRDNSSSFGALGVVLVKGVLAYILLRLGRSQDGLEVLEPVVGILAENPGLLRQVMCWHLSRCILLALTKLESLWAAFEASHRTMPVSGIVQQ 109
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BLAST of Ec-00_003040.1 vs. uniprot
Match: A0A6H5K9S8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9S8_9PHAE)

HSP 1 Score: 196 bits (498), Expect = 5.360e-59
Identity = 100/103 (97.09%), Postives = 100/103 (97.09%), Query Frame = 1 
Query:    1 MAELNSLLPILTRADGMSRDNSSSFGALGVVLVKGVLAYILLRLGRSQDGLEVLEPVVGILAENPGLLRQVMCWHLSRCILLALTKLESLWAAFEASHRTMPV 309
            MAELNSLLPILTRADGMSRDNSSSFG LGVVLVKGVLAYILLRLGRSQDGLEVLEPVVGILAENPGLLRQVMCWHLS CILLALTKLESLWAA EASHRTMPV
Sbjct:  342 MAELNSLLPILTRADGMSRDNSSSFGTLGVVLVKGVLAYILLRLGRSQDGLEVLEPVVGILAENPGLLRQVMCWHLSHCILLALTKLESLWAALEASHRTMPV 444
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BLAST of Ec-00_003040.1 vs. uniprot
Match: A0A6H5K8W2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8W2_9PHAE)

HSP 1 Score: 156 bits (394), Expect = 5.450e-44
Identity = 79/82 (96.34%), Postives = 81/82 (98.78%), Query Frame = 1 
Query:    1 MAELNSLLPILTRADGMSRDNSSSFGALGVVLVKGVLAYILLRLGRSQDGLEVLEPVVGILAENPGLLRQVMCWHLSRCILL 246
            MAELNSLLPILTRADGMS+DNSSSFGALGVVLVKGVLAYILLRLGRSQDGLEVLEPVVGILAENPGLLRQVMCWHLS CIL+
Sbjct:  216 MAELNSLLPILTRADGMSQDNSSSFGALGVVLVKGVLAYILLRLGRSQDGLEVLEPVVGILAENPGLLRQVMCWHLSHCILV 297
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BLAST of Ec-00_003040.1 vs. uniprot
Match: D8LD86_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD86_ECTSI)

HSP 1 Score: 159 bits (403), Expect = 1.230e-43
Identity = 81/82 (98.78%), Postives = 82/82 (100.00%), Query Frame = 1 
Query:    1 MAELNSLLPILTRADGMSRDNSSSFGALGVVLVKGVLAYILLRLGRSQDGLEVLEPVVGILAENPGLLRQVMCWHLSRCILL 246
            MAELNSLLPILTRADGMSRDNSSSFGALGVVLVKGVLAYILLRLGRSQDGLEVLEPVVGILAENPGLLRQVMCWHLSRCIL+
Sbjct:  305 MAELNSLLPILTRADGMSRDNSSSFGALGVVLVKGVLAYILLRLGRSQDGLEVLEPVVGILAENPGLLRQVMCWHLSRCILV 386
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BLAST of Ec-00_003040.1 vs. uniprot
Match: D8LD81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD81_ECTSI)

HSP 1 Score: 157 bits (398), Expect = 5.630e-43
Identity = 80/82 (97.56%), Postives = 81/82 (98.78%), Query Frame = 1 
Query:    1 MAELNSLLPILTRADGMSRDNSSSFGALGVVLVKGVLAYILLRLGRSQDGLEVLEPVVGILAENPGLLRQVMCWHLSRCILL 246
            MAELNSLLPILTRADGMSRDNSSSFGALGVVLVKGVLAYILLRLGRSQDGLEVLEPVVGILAENPGLLRQVMCWHLS CIL+
Sbjct:  303 MAELNSLLPILTRADGMSRDNSSSFGALGVVLVKGVLAYILLRLGRSQDGLEVLEPVVGILAENPGLLRQVMCWHLSHCILV 384
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BLAST of Ec-00_003040.1 vs. uniprot
Match: A0A6H5JWQ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWQ9_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 1.150e-35
Identity = 72/91 (79.12%), Postives = 74/91 (81.32%), Query Frame = 1 
Query:    1 MAELNSLLPILTRADGMSRDNSSSFGALGVVLVKGVLAYILLRLGRS-------QDGLE---VLEPVVGILAENPGLLRQVMCWHLSRCIL 243
            MAELNSLLPILTRADG SRDNSSSFGALGVVLV GVLA ILLRLG S       ++GL    VLEPVVGILAE PGLLRQVMCWHLS CIL
Sbjct:    1 MAELNSLLPILTRADGRSRDNSSSFGALGVVLVNGVLASILLRLGLSVSTTSWMRNGLGNVWVLEPVVGILAETPGLLRQVMCWHLSHCIL 91
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BLAST of Ec-00_003040.1 vs. uniprot
Match: A0A6H5JUV1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUV1_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 2.060e-24
Identity = 52/53 (98.11%), Postives = 53/53 (100.00%), Query Frame = 1 
Query:    1 MAELNSLLPILTRADGMSRDNSSSFGALGVVLVKGVLAYILLRLGRSQDGLEV 159
            MAELNSLLPILTRADGMS+DNSSSFGALGVVLVKGVLAYILLRLGRSQDGLEV
Sbjct:   91 MAELNSLLPILTRADGMSQDNSSSFGALGVVLVKGVLAYILLRLGRSQDGLEV 143
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BLAST of Ec-00_003040.1 vs. uniprot
Match: A0A835Z8X2_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8X2_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 2.110e-19
Identity = 42/82 (51.22%), Postives = 59/82 (71.95%), Query Frame = 1 
Query:    1 MAELNSLLPILTRADGMSRDNSSSFGALGVVLVKGVLAYILLRLGRSQDGLEVLEPVVGILAENPGLLRQVMCWHLSRCILL 246
            + EL++L+P+L  AD +    ++SFGALG VLVK  LAY+LLRLGR+ + L  LEPVV +L+ +PGL+RQ   WHL  C ++
Sbjct:    1 LEELSALVPLLLDADDLCARAAASFGALGTVLVKCALAYVLLRLGRTAECLRALEPVVPLLSLHPGLVRQSAVWHLVHCAMV 82
The following BLAST results are available for this feature:
BLAST of Ec-00_003040.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7FNW6_ECTSI8.830e-70100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K9S8_9PHAE5.360e-5997.09Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K8W2_9PHAE5.450e-4496.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LD86_ECTSI1.230e-4398.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LD81_ECTSI5.630e-4397.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JWQ9_9PHAE1.150e-3579.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUV1_9PHAE2.060e-2498.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z8X2_9STRA2.110e-1951.22Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:3145694..3147006 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length330
Hectar predicted targeting categoryother localisation
Gene idEc-00_003040.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_003040Ec-00_003040Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 3145694..3147006 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003040.1.3Ec-00_003040.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3145694..3145780 -
Ec-00_003040.1.2Ec-00_003040.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3145930..3146016 -
Ec-00_003040.1.1Ec-00_003040.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 3146851..3147006 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003040.1CDS:Ec-00_003040.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 3145694..3145780 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_003040.1Ec-00_003040.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 3145694..3147006 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_003040.1 ID=Ec-00_003040.1|Name=Ec-00_003040.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=110bp
MAELNSLLPILTRADGMSRDNSSSFGALGVVLVKGVLAYILLRLGRSQDG
LEVLEPVVGILAENPGLLRQVMCWHLSRCILLALTKLESLWAAFEASHRT
MPVSGIVQQ*
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spliced messenger RNA

>Ec-00_003040.1 ID=Ec-00_003040.1|Name=Ec-00_003040.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=330bp|location=Sequence derived from alignment at chr_00:3145694..3147006- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGAGTTGAACTCCCTCTTGCCGATCCTGACACGTGCTGACGGCAT
GAGCCGGGACAACTCGTCCTCGTTCGGAGCTCTCGGCGTCGTGCTCGTGA
AGGGGGTGTTGGCCTACATCTTGCTACGCTTGGGTAGGAGCCAAGACGGG
CTGGAGGTGCTGGAGCCGGTGGTGGGCATCCTAGCGGAAAACCCGGGGCT
GCTGCGGCAGGTCATGTGCTGGCATTTGTCACGCTGCATTCTGCTTGCGC
TTACGAAGCTCGAATCGCTATGGGCCGCTTTTGAAGCCTCCCATCGGACT
ATGCCTGTGTCGGGCATCGTCCAACAGTAA
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protein sequence of Ec-00_003040.1

>Ec-00_003040.1 ID=Ec-00_003040.1|Name=Ec-00_003040.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=110bp
MAELNSLLPILTRADGMSRDNSSSFGALGVVLVKGVLAYILLRLGRSQDG
LEVLEPVVGILAENPGLLRQVMCWHLSRCILLALTKLESLWAAFEASHRT
MPVSGIVQQ*
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mRNA from alignment at chr_00:3145694..3147006-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_003040.1 ID=Ec-00_003040.1|Name=Ec-00_003040.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1313bp|location=Sequence derived from alignment at chr_00:3145694..3147006- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGCGGAGTTGAACTCCCTCTTGCCGATCCTGACACGTGCTGACGGCAT
GAGCCGGGACAACTCGTCCTCGTTCGGAGCTCTCGGCGTCGTGCTCGTGA
AGGGGGTGTTGGCCTACATCTTGCTACGCTTGGGTAGGAGCCAAGACGGG
CTGGAGGTGTGTGCTGGTGGTGATGTTACCGTTTTGGTAGTTTGTTTCTC
GCCTGCGGTGACTGCAAGAGGTGTCGGAGCCGCTTGTTTTCCTCCACGGC
AGCGTCCTCAAGGCCGCCACGTGTACGTTTCACAAAAACCTTGCACAAAA
ATCTTGTTAGACGCAACGTTTTTCCTCTTGCGTGAGGCTTTTCGTATTTT
GGCAGGGGTGACGGGTAGGTTAATCCGTGTCCACAACGTCGTGGATGCGA
AACGGTCTGGGGAACGTTCGTTTTTTTTTGCTGTGGCCATTGTGTGGCTT
GTTTTTCTATCCGCAGCAAACGTAAGATTGCTTGGTGGATGTCCTAGACG
GTTGGCGTGGAATACCGGGCGCAGCAATTTTTGCCTTCATCCTAAGACGT
CCGTGTGCCGTTTGTGTCGGTGTGTCTGGGCGACCCCGTTGTTACTCCCG
CAAATGACGTATCCAAGTATCATTTTCGTACCGCGACAATACGGAACGAA
AGCTTCAACTCGGTCTGCGCGGAGTGTTTTCATGAGGGCTTGTTTTCGCA
AGGGCTGGTTGTTTTTGTTTTGTTCTCGTAGTGCCACGCGTGTTGGACGC
GCTGTTACGCTCACACGTGAATCACGAGACTGCCTTGGCAGCAGGTGCTT
CGCAAGCTTTCCTTGTCCGAAAACCTGCGCGCCATGCTGTGCTCACGTAG
AGCCGTCTACTGTAGCTCCTCGTTCCAAACCTCCACAGCAAACTTTCGTG
TTTTCGCGCAAACTCCCTGACGTTGTTCCCATAACTTATTGACTGCCGTG
TCCACGACTGGGTTGCTCTCGTCTACTGTTGGTATCGTAGGTGCTGGAGC
CGGTGGTGGGCATCCTAGCGGAAAACCCGGGGCTGCTGCGGCAGGTCATG
TGCTGGCATTTGTCACGCTGCATTCTGGTAAGCCATCACCAGCAGAGCGT
GTCGTGTCTGTACAGTTCCTTGTCTACCTTGTGTCTTGTTGTGTGGTTGT
TGGTAGTGTTCCATGGTTGATGCCGCCGTGATATTGCCCATCTTGTTGAT
CATCCCGTGTTTTCCATGTCATTTAGCTTGCGCTTACGAAGCTCGAATCG
CTATGGGCCGCTTTTGAAGCCTCCCATCGGACTATGCCTGTGTCGGGCAT
CGTCCAACAGTAA
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Coding sequence (CDS) from alignment at chr_00:3145694..3147006-

>Ec-00_003040.1 ID=Ec-00_003040.1|Name=Ec-00_003040.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=330bp|location=Sequence derived from alignment at chr_00:3145694..3147006- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGCGGAGTTGAACTCCCTCTTGCCGATCCTGACACGTGCTGACGGCAT
GAGCCGGGACAACTCGTCCTCGTTCGGAGCTCTCGGCGTCGTGCTCGTGA
AGGGGGTGTTGGCCTACATCTTGCTACGCTTGGGTAGGAGCCAAGACGGG
CTGGAGGTGCTGGAGCCGGTGGTGGGCATCCTAGCGGAAAACCCGGGGCT
GCTGCGGCAGGTCATGTGCTGGCATTTGTCACGCTGCATTCTGCTTGCGC
TTACGAAGCTCGAATCGCTATGGGCCGCTTTTGAAGCCTCCCATCGGACT
ATGCCTGTGTCGGGCATCGTCCAACAGTAA
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Synonyms
The feature 'Ec-00_003040.1' has the following synonyms
Synonym
Esi1805_0001
Esi_1805_0001