Ec-00_002710.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_002710.1
Unique NameEc-00_002710.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length277
Homology
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BLAST of Ec-00_002710.1 vs. uniprot
Match: D7FLX2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLX2_ECTSI)

HSP 1 Score: 310 bits (795), Expect = 3.680e-103
Identity = 276/276 (100.00%), Postives = 276/276 (100.00%), Query Frame = 1 
Query:    1 MDAIMQPLRMTLAYANACCGVALNVVGVYAGKGITVTPVNGLFPPGTGPAPADIPSPSIGXXXXXXXXXTTSMAGGXXXXXXXXXXXXXRTSISSVPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWRSLWGFSACEGAAXXXXXXXXXXSSSMHTTLYDIPFPATAPAEAKFSRSASMASVASIGLEGDASLSQHALSFDLDGAGPDGFFHLGSKTDLAVAATAATAEQQPGEGGGKD 828
            MDAIMQPLRMTLAYANACCGVALNVVGVYAGKGITVTPVNGLFPPGTGPAPADIPSPSIGXXXXXXXXXTTSMAGGXXXXXXXXXXXXXRTSISSVPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWRSLWGFSACEGAAXXXXXXXXXXSSSMHTTLYDIPFPATAPAEAKFSRSASMASVASIGLEGDASLSQHALSFDLDGAGPDGFFHLGSKTDLAVAATAATAEQQPGEGGGKD
Sbjct:    1 MDAIMQPLRMTLAYANACCGVALNVVGVYAGKGITVTPVNGLFPPGTGPAPADIPSPSIGXXXXXXXXXTTSMAGGXXXXXXXXXXXXXRTSISSVPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWRSLWGFSACEGAAXXXXXXXXXXSSSMHTTLYDIPFPATAPAEAKFSRSASMASVASIGLEGDASLSQHALSFDLDGAGPDGFFHLGSKTDLAVAATAATAEQQPGEGGGKD 276
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BLAST of Ec-00_002710.1 vs. uniprot
Match: D7G645_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G645_ECTSI)

HSP 1 Score: 199 bits (505), Expect = 1.430e-55
Identity = 216/216 (100.00%), Postives = 216/216 (100.00%), Query Frame = 1 
Query:    1 MDAIMQPLRMTLAYANACCGVALNVVGVYAGKGITVTPVNGLFPPGTGPAPADIPSPSIGXXXXXXXXXTTSMAGGXXXXXXXXXXXXXRTSISSVPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWRSLWGFSACEGAAXXXXXXXXXXSSSMHTTLYDIPFPATAPAEAKFSRSASM 648
            MDAIMQPLRMTLAYANACCGVALNVVGVYAGKGITVTPVNGLFPPGTGPAPADIPSPSIGXXXXXXXXXTTSMAGGXXXXXXXXXXXXXRTSISSVPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWRSLWGFSACEGAAXXXXXXXXXXSSSMHTTLYDIPFPATAPAEAKFSRSASM
Sbjct:  438 MDAIMQPLRMTLAYANACCGVALNVVGVYAGKGITVTPVNGLFPPGTGPAPADIPSPSIGXXXXXXXXXTTSMAGGXXXXXXXXXXXXXRTSISSVPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWRSLWGFSACEGAAXXXXXXXXXXSSSMHTTLYDIPFPATAPAEAKFSRSASM 653
[Close]
BLAST of Ec-00_002710.1 vs. uniprot
Match: A0A6H5J8L2_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8L2_9PHAE)

HSP 1 Score: 188 bits (478), Expect = 8.390e-51
Identity = 214/354 (60.45%), Postives = 218/354 (61.58%), Query Frame = 1 
Query:    1 MDAIMQPLRMTLAYANACCGVALNVVGVYAGKGITVTPVNGLFPPGTGPAPADIPSPSIGXXXXXXXXXTTSMAGGXXXXXXXXXXXXXRTSISSVPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWRSLWGFSACEGAAXXXXXXXXXXSS------------------------------------------------------------------------------SMHTTLYDIPFPATAPAEAKFSRSASMASVASIGLEGDASLSQHALSFDLDGAGPDGFFHLGSKTDLAVAATAATAEQQPGEGGGKD 828
            MDAIMQPLR+TLAYANACCGVALNVVGVYAGKGITVTPVNGLFPPGTGPAP DIP  S+GXXXXXXX  +                   RTS+SSVPD           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX              XXXXXXXXXX                                                                                SMHTTLYDIPFPATAPAEA     ASMASVASIGLEG ASLS HALSFDLDGAGPDGFFHLGSKTDLAVAATAATAEQQPGEGGGKD
Sbjct:  568 MDAIMQPLRLTLAYANACCGVALNVVGVYAGKGITVTPVNGLFPPGTGPAPVDIPITSVGXXXXXXXGFSAP-----------------RTSVSSVPDEGERLRYHRDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSMHTTLYDIPFPATAPAEA-----ASMASVASIGLEGGASLSHHALSFDLDGAGPDGFFHLGSKTDLAVAATAATAEQQPGEGGGKD 899
The following BLAST results are available for this feature:
BLAST of Ec-00_002710.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FLX2_ECTSI3.680e-103100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G645_ECTSI1.430e-55100.00Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
A0A6H5J8L2_9PHAE8.390e-5160.45Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:2880111..2880941 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length831
Hectar predicted targeting categorysignal peptide
Gene idEc-00_002710.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_002710Ec-00_002710Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 2880111..2880941 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002710.1.1Ec-00_002710.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2880111..2880941 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002710.1CDS:Ec-00_002710.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 2880111..2880941 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002710.1Ec-00_002710.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 2880111..2880941 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_002710.1 ID=Ec-00_002710.1|Name=Ec-00_002710.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=277bp
MDAIMQPLRMTLAYANACCGVALNVVGVYAGKGITVTPVNGLFPPGTGPA
PADIPSPSIGTGTAPVDIPTTSMAGGGGGSGGSSGFSSPRTSISSVPDEE
ERLRYNRDGGGGGDAAGRRPAAASPVSAAAAAVAACEADAKQRQSRASAA
SSSSPTMRGGGGGWRSLWGFSACEGAANNHEDDGGGRSSSMHTTLYDIPF
PATAPAEAKFSRSASMASVASIGLEGDASLSQHALSFDLDGAGPDGFFHL
GSKTDLAVAATAATAEQQPGEGGGKD*
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spliced messenger RNA

>Ec-00_002710.1 ID=Ec-00_002710.1|Name=Ec-00_002710.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=831bp|location=Sequence derived from alignment at chr_00:2880111..2880941+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGCCATCATGCAACCCCTGCGCATGACTCTCGCGTACGCGAACGC
CTGCTGTGGCGTGGCCCTCAACGTGGTCGGCGTCTACGCCGGCAAGGGGA
TCACCGTCACCCCCGTCAACGGCCTCTTCCCGCCGGGCACCGGCCCTGCC
CCCGCAGACATCCCCAGCCCCTCCATCGGCACCGGCACCGCCCCTGTAGA
CATCCCGACTACCTCTATGGCCGGCGGCGGCGGCGGCAGCGGCGGCAGCA
GCGGCTTCTCGTCTCCCCGGACATCCATCTCCTCCGTCCCAGACGAAGAA
GAACGCTTGCGGTACAACCGCGACGGCGGCGGTGGCGGCGACGCAGCCGG
GCGGCGACCGGCGGCGGCGTCGCCCGTATCGGCGGCGGCGGCGGCGGTGG
CGGCTTGCGAGGCGGACGCGAAGCAGCGGCAGTCGCGCGCCTCTGCCGCT
TCCTCCTCCTCGCCGACGATGCGCGGCGGCGGCGGCGGCTGGAGATCGCT
GTGGGGTTTTTCCGCCTGCGAAGGAGCGGCCAACAATCACGAGGACGACG
GCGGCGGCAGGAGCAGCAGCATGCACACAACCTTGTACGACATACCGTTC
CCCGCCACCGCCCCCGCGGAGGCGAAGTTCTCGAGGTCGGCCTCGATGGC
GAGCGTGGCCTCCATCGGACTCGAGGGAGACGCCTCCCTGTCTCAGCACG
CCCTGTCGTTCGACCTAGACGGAGCGGGGCCCGACGGGTTCTTCCACCTC
GGCTCCAAGACGGACCTCGCCGTGGCGGCGACGGCGGCGACGGCGGAGCA
ACAGCCAGGGGAAGGTGGGGGCAAGGACTAG
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protein sequence of Ec-00_002710.1

>Ec-00_002710.1 ID=Ec-00_002710.1|Name=Ec-00_002710.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=277bp
MDAIMQPLRMTLAYANACCGVALNVVGVYAGKGITVTPVNGLFPPGTGPA
PADIPSPSIGTGTAPVDIPTTSMAGGGGGSGGSSGFSSPRTSISSVPDEE
ERLRYNRDGGGGGDAAGRRPAAASPVSAAAAAVAACEADAKQRQSRASAA
SSSSPTMRGGGGGWRSLWGFSACEGAANNHEDDGGGRSSSMHTTLYDIPF
PATAPAEAKFSRSASMASVASIGLEGDASLSQHALSFDLDGAGPDGFFHL
GSKTDLAVAATAATAEQQPGEGGGKD*
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mRNA from alignment at chr_00:2880111..2880941+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_002710.1 ID=Ec-00_002710.1|Name=Ec-00_002710.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=831bp|location=Sequence derived from alignment at chr_00:2880111..2880941+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGACGCCATCATGCAACCCCTGCGCATGACTCTCGCGTACGCGAACGC
CTGCTGTGGCGTGGCCCTCAACGTGGTCGGCGTCTACGCCGGCAAGGGGA
TCACCGTCACCCCCGTCAACGGCCTCTTCCCGCCGGGCACCGGCCCTGCC
CCCGCAGACATCCCCAGCCCCTCCATCGGCACCGGCACCGCCCCTGTAGA
CATCCCGACTACCTCTATGGCCGGCGGCGGCGGCGGCAGCGGCGGCAGCA
GCGGCTTCTCGTCTCCCCGGACATCCATCTCCTCCGTCCCAGACGAAGAA
GAACGCTTGCGGTACAACCGCGACGGCGGCGGTGGCGGCGACGCAGCCGG
GCGGCGACCGGCGGCGGCGTCGCCCGTATCGGCGGCGGCGGCGGCGGTGG
CGGCTTGCGAGGCGGACGCGAAGCAGCGGCAGTCGCGCGCCTCTGCCGCT
TCCTCCTCCTCGCCGACGATGCGCGGCGGCGGCGGCGGCTGGAGATCGCT
GTGGGGTTTTTCCGCCTGCGAAGGAGCGGCCAACAATCACGAGGACGACG
GCGGCGGCAGGAGCAGCAGCATGCACACAACCTTGTACGACATACCGTTC
CCCGCCACCGCCCCCGCGGAGGCGAAGTTCTCGAGGTCGGCCTCGATGGC
GAGCGTGGCCTCCATCGGACTCGAGGGAGACGCCTCCCTGTCTCAGCACG
CCCTGTCGTTCGACCTAGACGGAGCGGGGCCCGACGGGTTCTTCCACCTC
GGCTCCAAGACGGACCTCGCCGTGGCGGCGACGGCGGCGACGGCGGAGCA
ACAGCCAGGGGAAGGTGGGGGCAAGGACTAG
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Coding sequence (CDS) from alignment at chr_00:2880111..2880941+

>Ec-00_002710.1 ID=Ec-00_002710.1|Name=Ec-00_002710.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=831bp|location=Sequence derived from alignment at chr_00:2880111..2880941+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGACGCCATCATGCAACCCCTGCGCATGACTCTCGCGTACGCGAACGC
CTGCTGTGGCGTGGCCCTCAACGTGGTCGGCGTCTACGCCGGCAAGGGGA
TCACCGTCACCCCCGTCAACGGCCTCTTCCCGCCGGGCACCGGCCCTGCC
CCCGCAGACATCCCCAGCCCCTCCATCGGCACCGGCACCGCCCCTGTAGA
CATCCCGACTACCTCTATGGCCGGCGGCGGCGGCGGCAGCGGCGGCAGCA
GCGGCTTCTCGTCTCCCCGGACATCCATCTCCTCCGTCCCAGACGAAGAA
GAACGCTTGCGGTACAACCGCGACGGCGGCGGTGGCGGCGACGCAGCCGG
GCGGCGACCGGCGGCGGCGTCGCCCGTATCGGCGGCGGCGGCGGCGGTGG
CGGCTTGCGAGGCGGACGCGAAGCAGCGGCAGTCGCGCGCCTCTGCCGCT
TCCTCCTCCTCGCCGACGATGCGCGGCGGCGGCGGCGGCTGGAGATCGCT
GTGGGGTTTTTCCGCCTGCGAAGGAGCGGCCAACAATCACGAGGACGACG
GCGGCGGCAGGAGCAGCAGCATGCACACAACCTTGTACGACATACCGTTC
CCCGCCACCGCCCCCGCGGAGGCGAAGTTCTCGAGGTCGGCCTCGATGGC
GAGCGTGGCCTCCATCGGACTCGAGGGAGACGCCTCCCTGTCTCAGCACG
CCCTGTCGTTCGACCTAGACGGAGCGGGGCCCGACGGGTTCTTCCACCTC
GGCTCCAAGACGGACCTCGCCGTGGCGGCGACGGCGGCGACGGCGGAGCA
ACAGCCAGGGGAAGGTGGGGGCAAGGACTAG
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Synonyms
The feature 'Ec-00_002710.1' has the following synonyms
Synonym
Esi1615_0001
Esi_1615_0001