Ec-00_002670.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_002670.1
Unique NameEc-00_002670.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length83
Homology
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BLAST of Ec-00_002670.1 vs. uniprot
Match: D7FLG2_ECTSI (ATP_bind_3 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLG2_ECTSI)

HSP 1 Score: 174 bits (440), Expect = 3.190e-55
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 1 
Query:    1 MKRGLLYACCREQGYNKLVLAQHLDDLAESFIMSALHNGQGPVCHLVLLLRLGREGLRRDGHVGRFVCLLVGGKTKSIWVAL 246
            MKRGLLYACCREQGYNKLVLAQHLDDLAESFIMSALHNGQGPVCHLVLLLRLGREGLRRDGHVGRFVCLLVGGKTKSIWVAL
Sbjct:    1 MKRGLLYACCREQGYNKLVLAQHLDDLAESFIMSALHNGQGPVCHLVLLLRLGREGLRRDGHVGRFVCLLVGGKTKSIWVAL 82
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BLAST of Ec-00_002670.1 vs. uniprot
Match: A0A6H5L116_9PHAE (ATP_bind_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L116_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 3.210e-32
Identity = 63/82 (76.83%), Postives = 63/82 (76.83%), Query Frame = 1 
Query:    1 MKRGLLYACCREQGYNKLVLAQHLDDLAESFIMSALHNGQGPVCHLVLLLRLGREGLRRDGHVGRFVCLLVGGKTKSIWVAL 246
            MKRGLLYACCREQGYNKLVLAQHLDDLAESFIMSALHNGQ                  RDGHVGRFVCLLVGGKTKSI VAL
Sbjct:   93 MKRGLLYACCREQGYNKLVLAQHLDDLAESFIMSALHNGQV---------------FSRDGHVGRFVCLLVGGKTKSIRVAL 159
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BLAST of Ec-00_002670.1 vs. uniprot
Match: D7FR81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR81_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 7.380e-18
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 1 
Query:    1 MKRGLLYACCREQGYNKLVLAQHLDDLAESFIMSALHNGQ 120
            MKRGLLYACCREQGYNKLVLAQHLDDLAESFIMSALHNGQ
Sbjct:  979 MKRGLLYACCREQGYNKLVLAQHLDDLAESFIMSALHNGQ 1018
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BLAST of Ec-00_002670.1 vs. uniprot
Match: K3WC28_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WC28_GLOUD)

HSP 1 Score: 80.9 bits (198), Expect = 5.760e-16
Identity = 36/40 (90.00%), Postives = 38/40 (95.00%), Query Frame = 1 
Query:    1 MKRGLLYACCREQGYNKLVLAQHLDDLAESFIMSALHNGQ 120
            MKRGLLY CCR QGYNKLVLAQHLDDLAESF+MSA+HNGQ
Sbjct:  879 MKRGLLYTCCRTQGYNKLVLAQHLDDLAESFLMSAMHNGQ 918
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BLAST of Ec-00_002670.1 vs. uniprot
Match: UPI001DB1BACB (Uncharacterized protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=UPI001DB1BACB)

HSP 1 Score: 79.7 bits (195), Expect = 1.470e-15
Identity = 35/40 (87.50%), Postives = 38/40 (95.00%), Query Frame = 1 
Query:    1 MKRGLLYACCREQGYNKLVLAQHLDDLAESFIMSALHNGQ 120
            MKRGLLY CCR++GYNKLVLAQHLDDLAESF MSA+HNGQ
Sbjct:  850 MKRGLLYTCCRKEGYNKLVLAQHLDDLAESFFMSAMHNGQ 889
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BLAST of Ec-00_002670.1 vs. uniprot
Match: A0A5D6Y3W1_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y3W1_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 1.470e-15
Identity = 35/40 (87.50%), Postives = 39/40 (97.50%), Query Frame = 1 
Query:    1 MKRGLLYACCREQGYNKLVLAQHLDDLAESFIMSALHNGQ 120
            MKRGLLY+CCR QG+NKLVLAQHLDDLAESF+MSA+HNGQ
Sbjct:  869 MKRGLLYSCCRAQGFNKLVLAQHLDDLAESFLMSAMHNGQ 908
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BLAST of Ec-00_002670.1 vs. uniprot
Match: A0A3F2RX29_9STRA (Uncharacterized protein n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RX29_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 1.480e-15
Identity = 35/40 (87.50%), Postives = 38/40 (95.00%), Query Frame = 1 
Query:    1 MKRGLLYACCREQGYNKLVLAQHLDDLAESFIMSALHNGQ 120
            MKRGLLY CCR++GYNKLVLAQHLDDLAESF MSA+HNGQ
Sbjct: 1338 MKRGLLYTCCRKEGYNKLVLAQHLDDLAESFFMSAMHNGQ 1377
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BLAST of Ec-00_002670.1 vs. uniprot
Match: A0A2D4BKU8_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BKU8_PYTIN)

HSP 1 Score: 78.2 bits (191), Expect = 5.100e-15
Identity = 34/40 (85.00%), Postives = 38/40 (95.00%), Query Frame = 1 
Query:    1 MKRGLLYACCREQGYNKLVLAQHLDDLAESFIMSALHNGQ 120
            MKRGLLY CCR++G+NKLVLAQHLDDLAESF MSA+HNGQ
Sbjct:  846 MKRGLLYTCCRQKGFNKLVLAQHLDDLAESFFMSAIHNGQ 885
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BLAST of Ec-00_002670.1 vs. uniprot
Match: W7UAQ3_9STRA (Pp-loop domain protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7UAQ3_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 1.210e-14
Identity = 35/65 (53.85%), Postives = 38/65 (58.46%), Query Frame = 1 
Query:    1 MKRGLLYACCREQGYNKLVLAQHLDDLAESFIMSALHNGQGPVCHLVLLLRLGREGLRRDGHVGR 195
            MKRGLLY CC E GYNKL+LAQHLDDL ES  MS +HNGQ             + G    G  GR
Sbjct:    1 MKRGLLYTCCVENGYNKLLLAQHLDDLVESLFMSLMHNGQVGXXXXXXXXXXEKGGRNSKGRRGR 65
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BLAST of Ec-00_002670.1 vs. uniprot
Match: A0A484EB29_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EB29_BRELC)

HSP 1 Score: 77.0 bits (188), Expect = 1.300e-14
Identity = 34/40 (85.00%), Postives = 37/40 (92.50%), Query Frame = 1 
Query:    1 MKRGLLYACCREQGYNKLVLAQHLDDLAESFIMSALHNGQ 120
            MKRG+LY CCR+ GYNKLVLAQHLDDLAESF MSA+HNGQ
Sbjct:  861 MKRGVLYTCCRQFGYNKLVLAQHLDDLAESFFMSAMHNGQ 900
The following BLAST results are available for this feature:
BLAST of Ec-00_002670.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLG2_ECTSI3.190e-55100.00ATP_bind_3 domain-containing protein n=1 Tax=Ectoc... [more]
A0A6H5L116_9PHAE3.210e-3276.83ATP_bind_3 domain-containing protein n=1 Tax=Ectoc... [more]
D7FR81_ECTSI7.380e-18100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
K3WC28_GLOUD5.760e-1690.00Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
UPI001DB1BACB1.470e-1587.50Uncharacterized protein n=1 Tax=Phytophthora kerno... [more]
A0A5D6Y3W1_9STRA1.470e-1587.50Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A3F2RX29_9STRA1.480e-1587.50Uncharacterized protein n=4 Tax=Phytophthora kerno... [more]
A0A2D4BKU8_PYTIN5.100e-1585.00Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
W7UAQ3_9STRA1.210e-1453.85Pp-loop domain protein n=1 Tax=Nannochloropsis gad... [more]
A0A484EB29_BRELC1.300e-1485.00Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:2858184..2858473 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.0
Seed ortholog evalue4.4e-15
Seed eggNOG ortholog2880.D7FR81
Length249
Hectar predicted targeting categoryother localisation
Gene idEc-00_002670.1
EggNOG free text desc.tRNA thio-modification
EggNOG OGsCOG0037@1,KOG2840@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_002670Ec-00_002670Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 2858184..2858473 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002670.1.1Ec-00_002670.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2858184..2858303 +
Ec-00_002670.1.2Ec-00_002670.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2858345..2858473 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002670.1CDS:Ec-00_002670.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 2858184..2858303 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_002670.1Ec-00_002670.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 2858184..2858473 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_002670.1 ID=Ec-00_002670.1|Name=Ec-00_002670.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=83bp
MKRGLLYACCREQGYNKLVLAQHLDDLAESFIMSALHNGQGPVCHLVLLL
RLGREGLRRDGHVGRFVCLLVGGKTKSIWVAL*
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spliced messenger RNA

>Ec-00_002670.1 ID=Ec-00_002670.1|Name=Ec-00_002670.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=249bp|location=Sequence derived from alignment at chr_00:2858184..2858473+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAACGCGGCCTGCTGTACGCTTGCTGCCGGGAGCAGGGCTACAACAA
GCTCGTCCTCGCCCAACACCTCGACGACCTCGCAGAGAGCTTCATCATGT
CCGCCCTGCACAACGGCCAGGGACCAGTCTGCCACTTAGTACTGCTATTA
CGTCTAGGCCGTGAGGGGCTTCGTCGAGACGGGCATGTAGGTCGCTTTGT
CTGCTTGCTTGTGGGAGGAAAGACGAAGTCAATCTGGGTTGCGCTGTAG
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protein sequence of Ec-00_002670.1

>Ec-00_002670.1 ID=Ec-00_002670.1|Name=Ec-00_002670.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=83bp
MKRGLLYACCREQGYNKLVLAQHLDDLAESFIMSALHNGQGPVCHLVLLL
RLGREGLRRDGHVGRFVCLLVGGKTKSIWVAL*
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mRNA from alignment at chr_00:2858184..2858473+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_002670.1 ID=Ec-00_002670.1|Name=Ec-00_002670.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=290bp|location=Sequence derived from alignment at chr_00:2858184..2858473+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGAAACGCGGCCTGCTGTACGCTTGCTGCCGGGAGCAGGGCTACAACAA
GCTCGTCCTCGCCCAACACCTCGACGACCTCGCAGAGAGCTTCATCATGT
CCGCCCTGCACAACGGCCAGGTACTGTCCTAGCGCGGAAGTGATGTCATG
TGTGGCGACAGGGACCAGTCTGCCACTTAGTACTGCTATTACGTCTAGGC
CGTGAGGGGCTTCGTCGAGACGGGCATGTAGGTCGCTTTGTCTGCTTGCT
TGTGGGAGGAAAGACGAAGTCAATCTGGGTTGCGCTGTAG
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Coding sequence (CDS) from alignment at chr_00:2858184..2858473+

>Ec-00_002670.1 ID=Ec-00_002670.1|Name=Ec-00_002670.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=249bp|location=Sequence derived from alignment at chr_00:2858184..2858473+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGAAACGCGGCCTGCTGTACGCTTGCTGCCGGGAGCAGGGCTACAACAA
GCTCGTCCTCGCCCAACACCTCGACGACCTCGCAGAGAGCTTCATCATGT
CCGCCCTGCACAACGGCCAGGGACCAGTCTGCCACTTAGTACTGCTATTA
CGTCTAGGCCGTGAGGGGCTTCGTCGAGACGGGCATGTAGGTCGCTTTGT
CTGCTTGCTTGTGGGAGGAAAGACGAAGTCAATCTGGGTTGCGCTGTAG
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Synonyms
The feature 'Ec-00_002670.1' has the following synonyms
Synonym
Esi1595_0001
Esi_1595_0001