Ec-00_002620.2 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR
Overview
Homology
BLAST of Ec-00_002620.2 vs. uniprot
Match: D7FLB5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLB5_ECTSI) HSP 1 Score: 132 bits (332), Expect = 1.710e-33 Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = -2 Query: 441 MQRGSGETIGCNVNKKETLVAPRSMGMHLRPSPTYTIPLLLMENATAQVVVKKMRRHPPGIGRD 632 MQRGSGETIGCNVNKKETLVAPRSMGMHLRPSPTYTIPLLLMENATAQVVVKKMRRHPPGIGRD Sbjct: 1 MQRGSGETIGCNVNKKETLVAPRSMGMHLRPSPTYTIPLLLMENATAQVVVKKMRRHPPGIGRD 64
BLAST of Ec-00_002620.2 vs. uniprot
Match: A0A6H5JYT7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYT7_9PHAE) HSP 1 Score: 114 bits (286), Expect = 1.050e-22 Identity = 50/60 (83.33%), Postives = 52/60 (86.67%), Query Frame = 3 Query: 6 LEGIDHRGEICCSLGCGQCGGPGCDASGASNGLGAESCCPPEVHDSGRYCDDTNEAPCII 185 LEGIDH+GE+CC LGCGQCGG GC SGASNGLGAESCC EV DSGRYCDD NEAPCII Sbjct: 746 LEGIDHKGEVCCPLGCGQCGGSGCSTSGASNGLGAESCCSSEVKDSGRYCDDANEAPCII 805
BLAST of Ec-00_002620.2 vs. uniprot
Match: D7FIS5_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIS5_ECTSI) HSP 1 Score: 112 bits (281), Expect = 2.520e-22 Identity = 48/61 (78.69%), Postives = 54/61 (88.52%), Query Frame = 3 Query: 3 GLEGIDHRGEICCSLGCGQCGGPGCDASGASNGLGAESCCPPEVHDSGRYCDDTNEAPCII 185 GLEGIDH+GE+CC L CGQCGG GC SGASNGLGA+SCC E++DSGR+CDDTNEAPCII Sbjct: 546 GLEGIDHKGEVCCPLRCGQCGGSGCSTSGASNGLGADSCCSSEINDSGRHCDDTNEAPCII 606
BLAST of Ec-00_002620.2 vs. uniprot
Match: D7FN07_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN07_ECTSI) HSP 1 Score: 102 bits (253), Expect = 4.000e-19 Identity = 60/62 (96.77%), Postives = 60/62 (96.77%), Query Frame = 1 Query: 1 MASRASTTEARSVVRSGVASAEVQDATLRALRTVSALSLAAHQRCTIAADTVTTPTRPRVSL 186 MASRASTTEARSVVRSGVASAEVQDATL ALRTV ALSLAAHQRCTIAADTVTTPTRPRVSL Sbjct: 430 MASRASTTEARSVVRSGVASAEVQDATLLALRTVLALSLAAHQRCTIAADTVTTPTRPRVSL 491
BLAST of Ec-00_002620.2 vs. uniprot
Match: A0A6H5JUS5_9PHAE (MEP12 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUS5_9PHAE) HSP 1 Score: 94.0 bits (232), Expect = 3.330e-16 Identity = 42/69 (60.87%), Postives = 50/69 (72.46%), Query Frame = 3 Query: 3 GLEGIDHRGEICCSLGCGQCGGPGCDASGASNGLGAESCCPPEVHDSGRYCDDTNEAPCIIIADDDHND 209 G EGID G +CC +GCGQCGG GC +G++NGLG+ESCC V G YCDDTNEAPCII + D +D Sbjct: 576 GTEGIDGNGVVCCPIGCGQCGGDGCSTAGSANGLGSESCCGGGVKSLGVYCDDTNEAPCIIGSAPDTDD 644
BLAST of Ec-00_002620.2 vs. uniprot
Match: A0A6H5JC43_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC43_9PHAE) HSP 1 Score: 92.0 bits (227), Expect = 4.160e-16 Identity = 40/61 (65.57%), Postives = 46/61 (75.41%), Query Frame = 3 Query: 3 GLEGIDHRGEICCSLGCGQCGGPGCDASGASNGLGAESCCPPEVHDSGRYCDDTNEAPCII 185 G+EGID G +CC LGCGQCGG GC SGA+ GLGA+SCC + S YCD+TNEAPCII Sbjct: 350 GVEGIDGNGVVCCPLGCGQCGGAGCTTSGAAAGLGADSCCGGSIKASDEYCDETNEAPCII 410
BLAST of Ec-00_002620.2 vs. uniprot
Match: D7G651_ECTSI (Mannuronan C-5-epimerase C-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G651_ECTSI) HSP 1 Score: 91.7 bits (226), Expect = 1.830e-15 Identity = 41/69 (59.42%), Postives = 49/69 (71.01%), Query Frame = 3 Query: 3 GLEGIDHRGEICCSLGCGQCGGPGCDASGASNGLGAESCCPPEVHDSGRYCDDTNEAPCIIIADDDHND 209 G EGID G +CC +GCGQC G GC +G++NGLG+ESCC V G YCDDTNEAPCII + D +D Sbjct: 341 GTEGIDGNGVVCCPIGCGQCAGDGCGTAGSANGLGSESCCGGGVKSLGLYCDDTNEAPCIIGSRPDTDD 409
BLAST of Ec-00_002620.2 vs. uniprot
Match: A0A6H5K5M2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5M2_9PHAE) HSP 1 Score: 85.1 bits (209), Expect = 4.840e-15 Identity = 36/58 (62.07%), Postives = 43/58 (74.14%), Query Frame = 3 Query: 3 GLEGIDHRGEICCSLGCGQCGGPGCDASGASNGLGAESCCPPEVHDSGRYCDDTNEAP 176 G+EGID G +CC LGCGQCGG GC ++GA+NGL + SCC + SG YCDDT EAP Sbjct: 85 GIEGIDGNGAVCCPLGCGQCGGTGCTSAGAANGLDSGSCCGGSIKSSGNYCDDTGEAP 142
BLAST of Ec-00_002620.2 vs. uniprot
Match: A0A6H5JZG5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZG5_9PHAE) HSP 1 Score: 89.0 bits (219), Expect = 5.610e-15 Identity = 39/61 (63.93%), Postives = 45/61 (73.77%), Query Frame = 3 Query: 3 GLEGIDHRGEICCSLGCGQCGGPGCDASGASNGLGAESCCPPEVHDSGRYCDDTNEAPCII 185 GLEGID G +CCSL CGQCGG GC SG++NGLG + CC + S YCD+TNEAPCII Sbjct: 244 GLEGIDGSGGVCCSLDCGQCGGKGCYTSGSANGLGGDFCCSGGIKASDEYCDETNEAPCII 304
BLAST of Ec-00_002620.2 vs. uniprot
Match: D7FQV4_ECTSI (Unsaturated glucuronyl hydrolase, family GH88 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQV4_ECTSI) HSP 1 Score: 89.7 bits (221), Expect = 5.820e-15 Identity = 40/61 (65.57%), Postives = 45/61 (73.77%), Query Frame = 3 Query: 3 GLEGIDHRGEICCSLGCGQCGGPGCDASGASNGLGAESCCPPEVHDSGRYCDDTNEAPCII 185 GLEGID G +CC L C QCGG GC SG++ GLG+ESCC + SG YCDDTNEAPCII Sbjct: 548 GLEGIDGNGVVCCPLECNQCGGTGCTTSGSAAGLGSESCCGGGIKASGAYCDDTNEAPCII 608 The following BLAST results are available for this feature:
BLAST of Ec-00_002620.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 16
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Ec-00_002620.2 ID=Ec-00_002620.2|Name=Ec-00_002620.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=110bpback to top spliced messenger RNA >Ec-00_002620.2 ID=Ec-00_002620.2|Name=Ec-00_002620.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2045bp|location=Sequence derived from alignment at chr_00:2803425..2805469- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon. ATGGCCTCGAGGGCATCGACCACAGAGGCGAGATCTGTTGTTCGCTCGGGback to top protein sequence of Ec-00_002620.2 >Ec-00_002620.2 ID=Ec-00_002620.2|Name=Ec-00_002620.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=110bp MECIVHVRVRVRVRGRLCTRNILFPRSTIFHRGGGGWPSPIRIRIVRRNSback to top mRNA from alignment at chr_00:2803425..2805469- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Ec-00_002620.2 ID=Ec-00_002620.2|Name=Ec-00_002620.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2045bp|location=Sequence derived from alignment at chr_00:2803425..2805469- (Ectocarpus species7 Ec32 male_plus_femaleSDR)back to top Coding sequence (CDS) from alignment at chr_00:2803425..2805469- >Ec-00_002620.2 ID=Ec-00_002620.2|Name=Ec-00_002620.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=330bp|location=Sequence derived from alignment at chr_00:2803425..2805469- (Ectocarpus species7 Ec32 male_plus_femaleSDR)back to top Synonyms
The feature 'Ec-00_002620.2' has the following synonyms
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