Ec-28_003550.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-28_003550.1
Unique NameEc-28_003550.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length375
Homology
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BLAST of Ec-28_003550.1 vs. uniprot
Match: D8LTM3_ECTSI (RING-type E3 ubiquitin transferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTM3_ECTSI)

HSP 1 Score: 676 bits (1745), Expect = 1.540e-244
Identity = 374/374 (100.00%), Postives = 374/374 (100.00%), Query Frame = 1 
Query:    1 MGHRLAAHPGVQNAILDDLVEQGRRVPSGRRGIHPNLQGPPGNERGLARLVDMLDPEEESSHRSTRTSRSGRGRSSGHLMLQRDRRGMFDYDDEPPLPHLHLDPRVSAELEGVYAEVQADGWQPWREEEKLDGSESGLSSSRLSDGRLGCSCKKCHASSGLSLGTEEEEAQEGTCWKDVLAEFECDICFDVLVGVHVLDNCGHTFCGACMERWIDNAPQGECPVCRTPVDKLVPVRKMDEMIAKAVEAAAPSRERDAWYERKAHWEGTARRRQXXXXXXXXXXXXXTPSHSVVHAQGAAAGIFGRTGVATWFGATDAREAGGRRNRXXXXXXXXXXXXXXXXXXXXGFRLDKMQTVLAVAVMLVMAVIKMRGLR 1122
            MGHRLAAHPGVQNAILDDLVEQGRRVPSGRRGIHPNLQGPPGNERGLARLVDMLDPEEESSHRSTRTSRSGRGRSSGHLMLQRDRRGMFDYDDEPPLPHLHLDPRVSAELEGVYAEVQADGWQPWREEEKLDGSESGLSSSRLSDGRLGCSCKKCHASSGLSLGTEEEEAQEGTCWKDVLAEFECDICFDVLVGVHVLDNCGHTFCGACMERWIDNAPQGECPVCRTPVDKLVPVRKMDEMIAKAVEAAAPSRERDAWYERKAHWEGTARRRQXXXXXXXXXXXXXTPSHSVVHAQGAAAGIFGRTGVATWFGATDAREAGGRRNRXXXXXXXXXXXXXXXXXXXXGFRLDKMQTVLAVAVMLVMAVIKMRGLR
Sbjct:    1 MGHRLAAHPGVQNAILDDLVEQGRRVPSGRRGIHPNLQGPPGNERGLARLVDMLDPEEESSHRSTRTSRSGRGRSSGHLMLQRDRRGMFDYDDEPPLPHLHLDPRVSAELEGVYAEVQADGWQPWREEEKLDGSESGLSSSRLSDGRLGCSCKKCHASSGLSLGTEEEEAQEGTCWKDVLAEFECDICFDVLVGVHVLDNCGHTFCGACMERWIDNAPQGECPVCRTPVDKLVPVRKMDEMIAKAVEAAAPSRERDAWYERKAHWEGTARRRQXXXXXXXXXXXXXTPSHSVVHAQGAAAGIFGRTGVATWFGATDAREAGGRRNRXXXXXXXXXXXXXXXXXXXXGFRLDKMQTVLAVAVMLVMAVIKMRGLR 374
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BLAST of Ec-28_003550.1 vs. uniprot
Match: A0A4S8MSH8_DENBC (RING/U-box n=1 Tax=Dendrothele bispora (strain CBS 962.96) TaxID=1314807 RepID=A0A4S8MSH8_DENBC)

HSP 1 Score: 70.5 bits (171), Expect = 2.790e-10
Identity = 37/100 (37.00%), Postives = 53/100 (53.00%), Query Frame = 1 
Query:  451 SCKKCHASSGLSLGTEEEEAQEGTCWKDVLAEFECDICFDVLVGVHVLDNCGHTFCGACMERWIDNAPQGECPVCRTPV---DKLVPVRKMDEMIAKAVE 741
            S K+  + S      ++ +A++     D+  E  C ICFD+LVG H+L+ CGHT CG C   WI    Q  CPVCRT       L+P   +D ++ K +E
Sbjct:   63 SSKRRRSCSPSVFPNKKAKAKQDELLDDLSDEISCPICFDLLVGAHLLNPCGHTLCGPCSYTWITLKKQTTCPVCRTKCCHYKSLIPNIIVDNIVEKYIE 162
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BLAST of Ec-28_003550.1 vs. uniprot
Match: A0A8H3TX00_9TREE (RING-type domain-containing protein n=1 Tax=Naganishia liquefaciens TaxID=104408 RepID=A0A8H3TX00_9TREE)

HSP 1 Score: 65.1 bits (157), Expect = 7.970e-8
Identity = 44/109 (40.37%), Postives = 55/109 (50.46%), Query Frame = 1 
Query:  496 EEEEA--QEGTCWKDVLAEFECDICFDVLVGVHVLDNCGHTFCGACMERWIDNAPQGECPVCRTPVDK-----LVPVRKMDEMIAKAVEAAAPSRE-RDAWYERKAHWE 798
            EE+E+  QE      V  E  C IC  +LVG      CGH FC  C   WI +     CP+CR P+ +     LVP+R +D +I K VEA     E RD W ER A W+
Sbjct:  249 EEKESIKQESMNVDAVEEEITCPICMAILVGATAAVPCGHLFCAPCGLSWIRD--HDNCPICRDPLAQPLTIALVPMRVVDALIGKWVEAKGSQWEGRDDWRERCAAWD 355
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BLAST of Ec-28_003550.1 vs. uniprot
Match: A0A167RHP8_CALVF (Kinase-like protein n=1 Tax=Calocera viscosa (strain TUFC12733) TaxID=1330018 RepID=A0A167RHP8_CALVF)

HSP 1 Score: 64.7 bits (156), Expect = 1.370e-7
Identity = 34/96 (35.42%), Postives = 52/96 (54.17%), Query Frame = 1 
Query:  544 EFECDICFDVLVGVHVLDNCGHTFCGACMERWIDNAPQGECPVCRTPVDKLVPVRK---MDEMIAKAVEAAAPS-----RERDA----WYERKAHW 795
            ++ C ICFD++VG H+ + CGH+ CG+C  +W  N     C  CR P+++  PV     +D +I K +   A +     +ER A    W +RKA W
Sbjct:  612 DYSCPICFDLIVGCHLTNPCGHSACGSCSTKWAANKTVPTCFACRAPMNRTTPVIPGLLVDNVIEKQINLLAENGDEEWQERGAKRKEWDQRKAAW 707
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BLAST of Ec-28_003550.1 vs. uniprot
Match: A0A4D9DAD4_9STRA (RING-type domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DAD4_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 6.490e-7
Identity = 34/85 (40.00%), Postives = 50/85 (58.82%), Query Frame = 1 
Query:  544 EFECDICFDVLVGVHVLDNCG--HTFCGACMERWIDNAPQG--ECPVCRTPVDKLVPVRKMDEMIAKAVEAAAPSRERDAWYERK 786
            + EC IC + +V    +D CG  HTFCG C+ERW++    G   CP C+ PV   +P+R+ D MI K V A+    E+ ++Y R+
Sbjct:  409 DLECVICHEYMVEAAAVD-CGEGHTFCGECIERWLELPVAGGSRCPTCQKPVHSTIPMRQYDAMIEKYVRASNLWDEQCSFYRRR 492
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BLAST of Ec-28_003550.1 vs. uniprot
Match: E3LLZ3_CAERE (RING-type domain-containing protein n=4 Tax=Caenorhabditis TaxID=6237 RepID=E3LLZ3_CAERE)

HSP 1 Score: 55.8 bits (133), Expect = 1.510e-5
Identity = 24/56 (42.86%), Postives = 35/56 (62.50%), Query Frame = 1 
Query:  535 VLAEFECDICFDVLVGVH----VLDNCGHTFCGACMERWIDNAPQGECPVCRTPVD 690
            +++  EC ICF           V+D CGHTFC AC+E W++N  +  CP+CRTP++
Sbjct:    1 MVSRLECAICFHYFDDFERLPKVIDECGHTFCYACLENWLNN--EDTCPMCRTPIN 54
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BLAST of Ec-28_003550.1 vs. uniprot
Match: UPI0009E25AFA (LOW QUALITY PROTEIN: uncharacterized protein LOC110018860 n=1 Tax=Phalaenopsis equestris TaxID=78828 RepID=UPI0009E25AFA)

HSP 1 Score: 57.0 bits (136), Expect = 3.490e-5
Identity = 29/82 (35.37%), Postives = 48/82 (58.54%), Query Frame = 1 
Query:  478 GLSLGTEEEEAQEGTCWKDVLAEFECDICFDVL---VGVHVLDNCGHTFCGACMERWID-NAPQGECPVCRTPVDK--LVPV 705
            G+ +   E   ++G   K  +A FEC+ICFD+    V   V+ +CGH FC +C+ +W+  ++   ECPVC+  V +  +VP+
Sbjct:  280 GVEVLIPESSEEDGEVKKKSVANFECNICFDMAKEPVVTSVVTSCGHLFCWSCLYQWLHVHSDNKECPVCKGEVTEANIVPI 361
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BLAST of Ec-28_003550.1 vs. uniprot
Match: A0A8H6SWW9_9AGAR (RING finger protein 8 n=1 Tax=Mycena indigotica TaxID=2126181 RepID=A0A8H6SWW9_9AGAR)

HSP 1 Score: 55.8 bits (133), Expect = 3.820e-5
Identity = 25/64 (39.06%), Postives = 37/64 (57.81%), Query Frame = 1 
Query:  544 EFECDICFDVLVGVHVLDNCGHTFCGACMERWID-NAPQGECPVCRTPVDK--LVPVRKMDEMI 726
            E  C IC D+L   H+L+ CGH+FCG C+  WI     +  CPVCR  + K  + P   +D+++
Sbjct:  137 ELTCAICCDLLAAAHLLNPCGHSFCGECVSEWISVKVRKTTCPVCRAIIAKQPMAPNISLDKLV 200
The following BLAST results are available for this feature:
BLAST of Ec-28_003550.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D8LTM3_ECTSI1.540e-244100.00RING-type E3 ubiquitin transferase n=2 Tax=Ectocar... [more]
A0A4S8MSH8_DENBC2.790e-1037.00RING/U-box n=1 Tax=Dendrothele bispora (strain CBS... [more]
A0A8H3TX00_9TREE7.970e-840.37RING-type domain-containing protein n=1 Tax=Nagani... [more]
A0A167RHP8_CALVF1.370e-735.42Kinase-like protein n=1 Tax=Calocera viscosa (stra... [more]
A0A4D9DAD4_9STRA6.490e-740.00RING-type domain-containing protein n=2 Tax=Monodo... [more]
E3LLZ3_CAERE1.510e-542.86RING-type domain-containing protein n=4 Tax=Caenor... [more]
UPI0009E25AFA3.490e-535.37LOW QUALITY PROTEIN: uncharacterized protein LOC11... [more]
A0A8H6SWW9_9AGAR3.820e-539.06RING finger protein 8 n=1 Tax=Mycena indigotica Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_28contigchr_28:3361099..3365335 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeNematoda
Seed ortholog score62.4
Seed ortholog evalue5.2e-07
Seed eggNOG ortholog6238.CBG20152
Length1125
KEGG koko:K10666
KEGG Pathwayko04141,map04141
Hectar predicted targeting categoryother localisation
Gene idEc-28_003550.1
GOsGO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006464,GO:0006807,GO:0006928,GO:0008150,GO:0008152,GO:0009987,GO:0016477,GO:0016567,GO:0016740,GO:0018996,GO:0019538,GO:0019787,GO:0030054,GO:0030154,GO:0032446,GO:0032501,GO:0032502,GO:0036211,GO:0040011,GO:0040039,GO:0042303,GO:0042692,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043292,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044444,GO:0044449,GO:0044464,GO:0048468,GO:0048856,GO:0048869,GO:0048870,GO:0051146,GO:0051179,GO:0051674,GO:0055001,GO:0055002,GO:0055120,GO:0061061,GO:0061630,GO:0061659,GO:0070647,GO:0071704,GO:0099080,GO:0099081,GO:0099512,GO:0140096,GO:1901564
EggNOG free text desc.Prokaryotic RING finger family 4
EggNOG OGs1KVTX@119089,38DK1@33154,3BD90@33208,3CV7Q@33213,40D8V@6231,4105A@6236,COG5574@1,KOG0823@2759
EC2.3.2.27
COG Functional cat.O
Best tax levelRhabditida
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-28_003550Ec-28_003550Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_28 3359517..3365360 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_003550.1Ec-28_003550.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_28 3361099..3365335 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_003550.1.6Ec-28_003550.1.6Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 3361099..3361503 -
Ec-28_003550.1.5Ec-28_003550.1.5Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 3362284..3362408 -
Ec-28_003550.1.4Ec-28_003550.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 3363284..3363473 -
Ec-28_003550.1.3Ec-28_003550.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 3363804..3364065 -
Ec-28_003550.1.2Ec-28_003550.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 3364719..3364801 -
Ec-28_003550.1.1Ec-28_003550.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 3365276..3365335 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_003550.1CDS:Ec-28_003550.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_28 3361099..3361503 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-28_003550.1 ID=Ec-28_003550.1|Name=Ec-28_003550.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=375bp
MGHRLAAHPGVQNAILDDLVEQGRRVPSGRRGIHPNLQGPPGNERGLARL
VDMLDPEEESSHRSTRTSRSGRGRSSGHLMLQRDRRGMFDYDDEPPLPHL
HLDPRVSAELEGVYAEVQADGWQPWREEEKLDGSESGLSSSRLSDGRLGC
SCKKCHASSGLSLGTEEEEAQEGTCWKDVLAEFECDICFDVLVGVHVLDN
CGHTFCGACMERWIDNAPQGECPVCRTPVDKLVPVRKMDEMIAKAVEAAA
PSRERDAWYERKAHWEGTARRRQEARAAAAAAAAAATPSHSVVHAQGAAA
GIFGRTGVATWFGATDAREAGGRRNRGRGEEEGRGRRDEDEDDDDDGFRL
DKMQTVLAVAVMLVMAVIKMRGLR*
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spliced messenger RNA

>Ec-28_003550.1 ID=Ec-28_003550.1|Name=Ec-28_003550.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1125bp|location=Sequence derived from alignment at chr_28:3361099..3365335- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCCACCGTCTTGCAGCACACCCTGGCGTGCAGAATGCTATCCTGGA
CGATCTCGTGGAACAAGGTCGCCGGGTACCCTCGGGGCGGAGAGGCATCC
ATCCCAATCTGCAGGGACCCCCAGGGAACGAACGGGGGCTAGCCCGCCTG
GTGGACATGCTAGACCCCGAGGAAGAAAGCTCTCACAGGTCCACTAGGAC
CAGCCGCAGCGGCCGTGGCAGAAGCTCGGGCCACCTCATGCTTCAGCGCG
ACCGTCGCGGGATGTTCGACTACGACGACGAGCCGCCCCTGCCGCACCTG
CACCTGGACCCCAGGGTTTCCGCAGAGCTGGAAGGCGTGTACGCGGAGGT
GCAGGCCGACGGCTGGCAGCCGTGGCGGGAGGAGGAGAAGTTGGACGGAT
CCGAGAGCGGGCTGAGCAGCAGCCGTCTGAGCGACGGGAGGCTCGGCTGC
TCGTGCAAGAAGTGCCACGCATCATCGGGGTTAAGCCTGGGCACGGAAGA
AGAGGAGGCGCAAGAGGGCACCTGCTGGAAGGACGTGTTGGCTGAGTTCG
AGTGCGACATATGCTTCGATGTGCTCGTAGGCGTGCACGTGCTCGATAAC
TGTGGCCATACCTTCTGTGGCGCCTGCATGGAGCGCTGGATCGACAACGC
CCCGCAGGGAGAATGCCCTGTGTGCAGAACACCCGTCGACAAGCTCGTAC
CCGTCAGGAAGATGGACGAGATGATTGCCAAGGCGGTAGAAGCCGCGGCG
CCCAGCAGGGAGCGCGACGCATGGTATGAGCGCAAAGCCCACTGGGAGGG
CACCGCAAGGCGACGCCAGGAGGCGAGAGCTGCTGCTGCTGCTGCTGCGG
CGGCGGCGACCCCGTCGCACTCTGTCGTCCACGCCCAAGGAGCCGCCGCC
GGCATTTTCGGTCGCACCGGCGTGGCGACGTGGTTCGGGGCAACGGATGC
AAGAGAAGCAGGCGGTAGACGCAACAGGGGAAGGGGGGAGGAAGAGGGCC
GGGGTAGGAGGGATGAGGATGAGGATGATGATGATGATGGTTTCCGTCTG
GATAAGATGCAGACGGTGCTCGCTGTGGCGGTGATGTTGGTGATGGCGGT
CATCAAGATGAGGGGTCTGCGGTGA
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protein sequence of Ec-28_003550.1

>Ec-28_003550.1 ID=Ec-28_003550.1|Name=Ec-28_003550.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=375bp
MGHRLAAHPGVQNAILDDLVEQGRRVPSGRRGIHPNLQGPPGNERGLARL
VDMLDPEEESSHRSTRTSRSGRGRSSGHLMLQRDRRGMFDYDDEPPLPHL
HLDPRVSAELEGVYAEVQADGWQPWREEEKLDGSESGLSSSRLSDGRLGC
SCKKCHASSGLSLGTEEEEAQEGTCWKDVLAEFECDICFDVLVGVHVLDN
CGHTFCGACMERWIDNAPQGECPVCRTPVDKLVPVRKMDEMIAKAVEAAA
PSRERDAWYERKAHWEGTARRRQEARAAAAAAAAAATPSHSVVHAQGAAA
GIFGRTGVATWFGATDAREAGGRRNRGRGEEEGRGRRDEDEDDDDDGFRL
DKMQTVLAVAVMLVMAVIKMRGLR*
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mRNA from alignment at chr_28:3361099..3365335-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-28_003550.1 ID=Ec-28_003550.1|Name=Ec-28_003550.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=4237bp|location=Sequence derived from alignment at chr_28:3361099..3365335- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGGCCACCGTCTTGCAGCACACCCTGGCGTGCAGAATGCTATCCTGGA
CGATCTCGTGGTGAGTTTTTTTTTTTTTTTGTCGTGCGGCCAGACTTGTC
GGATCCAATGAAAGGGCTGGAATGGATGTCCCTCACCCTCGGGTGACGAT
GAGGAGGGTGATTGGCGAGTACATGTGGTGTGCATTGCACATGGTCTGAC
CGTTTTGTATTCTGGAAGAGAGATTAGCCGTTGTGACCCGCACATGGGGT
TGTCGACGTTGTCCTTTCGGTAGCAAGGGCCATGAGGTTGTCGAGAGACG
TACATGTTGTCCATATTTAGCACAATTATTGTCAATACGCCACAAGCGTC
GTTCACAGCAACAAGACCAGACCTCGAGAGGTGCCAAGAATCATGCAGGA
ATTATCCAGCAGTATTGTTAGCTTTGCCTTTCTTGTTATCGGGTCGAAAA
GTCGCAAAAGTGGAGATCAACGCTGTGTTTTCTCATGACGCTAACCCCTG
TCACTATTCTTGATTTGTTGTTGTTGTTGTGCAGGAACAAGGTCGCCGGG
TACCCTCGGGGCGGAGAGGCATCCATCCCAATCTGCAGGGACCCCCAGGG
AACGAACGGGGGCTAGCGTAAGTGGTTTGATCAATAATGTGTCATTTGTC
GGAAGGTTTGGATTTTTTGTGTTGAGCATGGCCGCGAGGCAGCACGGGAA
GGTATTTCGTTGCCATTTTTTCTCATCTTCGCGCAGCGTTTTTCCATCAA
ACCTTGACCTTGGATCATGGCTGTCTTCCGCAATCTCTCCCGTGAACATA
CAGCTGTTGTTGTTGTTGCGACAATCCCCACCAGGACGCTCCCACCTACC
CGGCAGTTCCGAGAGCCAACGTGGGCGAAACGATGCGTTGGCTGTACTGG
CGCCCGCCCCTCCGAAATCCAGCCTTGTGGCATCCACAAGTCAGCTCTCT
GATTCCAGCATGTAAATGCTCACCCTCTGATTCCACCGGTCTGTCTGTTG
TGGCGCTCCACAGTAAGCATCCTCGGAACGAGACATGCCCCTCCCTCCGT
TGGCGTTCCCCCTCAACTACCATGTACTATTTCGGATATCCCTGGTCAAT
TATTGCTGTAGCACCTTGAATAGAAAGACGAGGGTAAAGCTACAAGTAGG
CATTGCTAAATCACCATAATCTAGCCCCCCATTCTTACAGAAAATTATCC
TGAAATAACCGTTTTTTTAGTTCACATAATCTCCGTTTCTTGCCCCCTCC
CCCTCCCCCCAAAACTGCAGCCGCCTGGTGGACATGCTAGACCCCGAGGA
AGAAAGCTCTCACAGGTCCACTAGGACCAGCCGCAGCGGCCGTGGCAGAA
GCTCGGGCCACCTCATGCTTCAGCGCGACCGTCGCGGGATGTTCGACTAC
GACGACGAGCCGCCCCTGCCGCACCTGCACCTGGACCCCAGGGTTTCCGC
AGAGCTGGAAGGCGTGTACGCGGAGGTGCAGGCCGACGGCTGGCAGCCGT
GGCGGGAGGAGGAGAAGTTGGACGGATCCGAGGTGAGCACAGTACATGGT
GTGCGTGTTTTTGGCGGTGATGGCACCTGTGGTGCTGTCATCCGTTGGGG
TATTTTTGTTGTTACTGGGCTCTAGGGGGGGGCATGGATTCAAGCGGCAT
TCCCAAGGCGCAGTAGATGACCTGCCGCCGTGGCCAGAGGAAGAAATCAG
AATCACGGGCTCTGTCAGTGCGAACCGGCGTCGTACCCGCCTATAGCTCG
CCCCCCAAATTGTTTCACCCCACAATTTCGCAACCGTGGGCGGACGGGCA
TTCACGGCTCCAAGAACCTTTTCGACCGCGTCCGTCCGGCCGTTGTTGCC
CTCGCGGTGCAGAGCGGGCTGAGCAGCAGCCGTCTGAGCGACGGGAGGCT
CGGCTGCTCGTGCAAGAAGTGCCACGCATCATCGGGGTTAAGCCTGGGCA
CGGAAGAAGAGGAGGCGCAAGAGGGCACCTGCTGGAAGGACGTGTTGGCT
GAGTTCGAGTGCGACATATGCTTCGATGTGCTCGTAGGCGTGCACGTGCT
CGGTGAGATGGAGAAGAATAAGAAAAAGAAGAAGAAAGACCATTCGTGGC
TAGGCCGGGCCTGGCGCACGCGTGGCTTTTGTGCGAGAGGTTTTTGTGGT
TTTGAGGCGGCCGATGAGAAGCGGTTCGTGGCAAGGCTAGGATAGGCCGG
GTCAGGCCAGACGTTGGAGGCGTGCGCTTGAGCTTTTTTGTTGTGGTTTG
AGTCGGCGTGGGCATGTGCGGGTGACGAGGGCGAGGATGATGAGGAGAGA
GCGCGCGACAAGGCTTTGCTTGAAAGACCCCCCCTTGGGCGCGTTGTGGT
TTGAGCGGAGAATGATTGTTTGCGTTTGCTCGTGTCCTGGGGCACACCCC
GTGAAGGAGGAAAGGACTTAAGTAGTTGTCAGGTGTTTCTGGTTGTCTTG
TAAGTGCAGTGATATCGTGCACGCCGTTTTAACCATTCTCAGCAATGTGG
GTGTCGTTACGGGTCTATGTCTGTGTCCTAGCCTCCTCTGGTTTACTCTT
GGTGGTCGTTGCCCCCCTACGCATGCGTTACTATTACGACGACTTGAGTT
GCTGCTAAGCGAAACTAGCAGCCTGAGAGCGTGCCATGATACGTGCACAC
CTCCCCCGCGACACGCATCTACGTGTGGCTGTGCGGCATGGAAGCTAACG
CTGCTTGTCTGGTTTGAACTCTGAACCCTTGGGTTTCAGCTTAGGCCTGT
CTCTGTCGATGCGATTTTGCGTCACAAGGCAAATGCGGTTGGCATCTGTA
ATCCTCAATAGCTTGTTTTTCTGTCTGTGCGAATGTCCGTCACATGATAT
CTGCGATTGACATCTGAGCCTTCCTAAGTTGAAAGCGTGGCCTCTCTGTG
TCTTTTGCTGTCATTGTCTTGTCACAGATAACTGTGGCCATACCTTCTGT
GGCGCCTGCATGGAGCGCTGGATCGACAACGCCCCGCAGGGAGAATGCCC
TGTGTGCAGAACACCCGTCGACAAGCTCGTACCCGTCAGGAAGATGGACG
AGGTGCGTAGGTGTAGAGCAGTGGGACGCGCCAGCGTTTGTTGACCCTAG
CTGTAAGGCCGAAATGGCACCCCGTATATGCGTTTGCACCCCATGTTTCC
TCTCGTTGTGCTGCCGCCAGCGCTGTGCTCTACTCCACACCACATACATA
CATATGACACCATGAAATGGCAGAACAAAGATTGGTTGTGGGGCTTGGTT
GCGCAACAGCAGGGCAGTGCCTGTATCTACATGTGTTCGGAAATTGCGCA
CTCGAAAGGTTGGCTCTGCGGCGCGTTCTGCCAAAGTTGCCTTTTGACGA
GAGGCTTGTCCTCTCGTCCCCTCTTCGTAGCACCCTCTATCCAAGGCCCA
CTGTTTGATGTACAGCATATCCACTATGCTACAAAATCATCAAACAAGAG
TACAACCGGAGTCCTTCAACTCGTTGAGCTGTTGGACCTTGGTATTAACC
CCAGGGTTGTAATCCCTGTAGTCAGCGCTGCCCCATGCGGTTCATTGGCT
TACAGGCGGGAACATGTGTCTTCACTTGGAAGACTGGAATGTACCTTGCT
ATGACGTTCAGGCGTGTATTCCAGATTTTTTTCTTGTGCAGAAGAAAGAC
AGCGTCACAAATGGTCACAGAGGGATTGATTCCGACAATGTTCTGTATTC
CAACACCCACGAAGTGGACCAAAAGGCATGTACGTGGTCAGTGCCCCGTC
TTTTTTCTCGTCTCCATCAGCTTTATTTTTCCGCGTCACGATGCTCGCCC
TTGTCTATCTCCTCCACAATCCCGAAACTCAGATGATTGCCAAGGCGGTA
GAAGCCGCGGCGCCCAGCAGGGAGCGCGACGCATGGTATGAGCGCAAAGC
CCACTGGGAGGGCACCGCAAGGCGACGCCAGGAGGCGAGAGCTGCTGCTG
CTGCTGCTGCGGCGGCGGCGACCCCGTCGCACTCTGTCGTCCACGCCCAA
GGAGCCGCCGCCGGCATTTTCGGTCGCACCGGCGTGGCGACGTGGTTCGG
GGCAACGGATGCAAGAGAAGCAGGCGGTAGACGCAACAGGGGAAGGGGGG
AGGAAGAGGGCCGGGGTAGGAGGGATGAGGATGAGGATGATGATGATGAT
GGTTTCCGTCTGGATAAGATGCAGACGGTGCTCGCTGTGGCGGTGATGTT
GGTGATGGCGGTCATCAAGATGAGGGGTCTGCGGTGA
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Coding sequence (CDS) from alignment at chr_28:3361099..3365335-

>Ec-28_003550.1 ID=Ec-28_003550.1|Name=Ec-28_003550.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=1125bp|location=Sequence derived from alignment at chr_28:3361099..3365335- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGGCCACCGTCTTGCAGCACACCCTGGCGTGCAGAATGCTATCCTGGA
CGATCTCGTGGAACAAGGTCGCCGGGTACCCTCGGGGCGGAGAGGCATCC
ATCCCAATCTGCAGGGACCCCCAGGGAACGAACGGGGGCTAGCCCGCCTG
GTGGACATGCTAGACCCCGAGGAAGAAAGCTCTCACAGGTCCACTAGGAC
CAGCCGCAGCGGCCGTGGCAGAAGCTCGGGCCACCTCATGCTTCAGCGCG
ACCGTCGCGGGATGTTCGACTACGACGACGAGCCGCCCCTGCCGCACCTG
CACCTGGACCCCAGGGTTTCCGCAGAGCTGGAAGGCGTGTACGCGGAGGT
GCAGGCCGACGGCTGGCAGCCGTGGCGGGAGGAGGAGAAGTTGGACGGAT
CCGAGAGCGGGCTGAGCAGCAGCCGTCTGAGCGACGGGAGGCTCGGCTGC
TCGTGCAAGAAGTGCCACGCATCATCGGGGTTAAGCCTGGGCACGGAAGA
AGAGGAGGCGCAAGAGGGCACCTGCTGGAAGGACGTGTTGGCTGAGTTCG
AGTGCGACATATGCTTCGATGTGCTCGTAGGCGTGCACGTGCTCGATAAC
TGTGGCCATACCTTCTGTGGCGCCTGCATGGAGCGCTGGATCGACAACGC
CCCGCAGGGAGAATGCCCTGTGTGCAGAACACCCGTCGACAAGCTCGTAC
CCGTCAGGAAGATGGACGAGATGATTGCCAAGGCGGTAGAAGCCGCGGCG
CCCAGCAGGGAGCGCGACGCATGGTATGAGCGCAAAGCCCACTGGGAGGG
CACCGCAAGGCGACGCCAGGAGGCGAGAGCTGCTGCTGCTGCTGCTGCGG
CGGCGGCGACCCCGTCGCACTCTGTCGTCCACGCCCAAGGAGCCGCCGCC
GGCATTTTCGGTCGCACCGGCGTGGCGACGTGGTTCGGGGCAACGGATGC
AAGAGAAGCAGGCGGTAGACGCAACAGGGGAAGGGGGGAGGAAGAGGGCC
GGGGTAGGAGGGATGAGGATGAGGATGATGATGATGATGGTTTCCGTCTG
GATAAGATGCAGACGGTGCTCGCTGTGGCGGTGATGTTGGTGATGGCGGT
CATCAAGATGAGGGGTCTGCGGTGA
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Synonyms
The feature 'Ec-28_003550.1' has the following synonyms
Synonym
Esi0009_0049
Esi_0009_0049