Ec-28_003430.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-28_003430.1
Unique NameEc-28_003430.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length119
Homology
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BLAST of Ec-28_003430.1 vs. uniprot
Match: A0A6H5JTD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTD4_9PHAE)

HSP 1 Score: 191 bits (484), Expect = 1.770e-60
Identity = 100/113 (88.50%), Postives = 105/113 (92.92%), Query Frame = 1 
Query:   16 VALAMARQLSQQLDGQRETLERRATTAEALRDVSRQKCSDCLENHMGRNQAAEVPARLAGLVGGSLSAWLFCVALGLTWAPRAALALGIPCTLVMAAICSKHMPRPNVKRRSD 354
            VALAMARQLSQQLD QRETLE RATTAEALRD SRQKCS+CLE+H  R+QAAEVPARLAGLVGGSLSAWLFCVALGLTWAPR ALALGIPCTLVMAA+CSK MP P+VKRRSD
Sbjct:   29 VALAMARQLSQQLDSQRETLEGRATTAEALRDFSRQKCSECLESHTRRDQAAEVPARLAGLVGGSLSAWLFCVALGLTWAPRVALALGIPCTLVMAALCSKRMPWPSVKRRSD 141
The following BLAST results are available for this feature:
BLAST of Ec-28_003430.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JTD4_9PHAE1.770e-6088.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_28contigchr_28:3251308..3252895 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length357
Hectar predicted targeting categorysignal anchor
Gene idEc-28_003430.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-28_003430Ec-28_003430Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_28 3251308..3252895 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_003430.1.1Ec-28_003430.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 3251308..3251358 +
Ec-28_003430.1.2Ec-28_003430.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 3251586..3251690 +
Ec-28_003430.1.3Ec-28_003430.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 3252211..3252330 +
Ec-28_003430.1.4Ec-28_003430.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_28 3252815..3252895 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_003430.1CDS:Ec-28_003430.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_28 3251308..3251358 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-28_003430.1Ec-28_003430.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_28 3251308..3252895 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-28_003430.1 ID=Ec-28_003430.1|Name=Ec-28_003430.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=119bp
MPVSQVALAMARQLSQQLDGQRETLERRATTAEALRDVSRQKCSDCLENH
MGRNQAAEVPARLAGLVGGSLSAWLFCVALGLTWAPRAALALGIPCTLVM
AAICSKHMPRPNVKRRSD*
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spliced messenger RNA

>Ec-28_003430.1 ID=Ec-28_003430.1|Name=Ec-28_003430.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=357bp|location=Sequence derived from alignment at chr_28:3251308..3252895+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGGTGTCGCAGGTGGCGTTGGCGATGGCACGGCAACTCTCCCAGCA
GCTGGACGGCCAACGGGAGACTTTGGAGCGAAGGGCGACGACGGCAGAGG
CTTTGCGAGATGTTTCCAGGCAAAAATGCAGCGACTGTCTCGAGAACCAC
ATGGGACGAAATCAAGCTGCTGAGGTACCAGCGAGATTAGCCGGACTGGT
GGGGGGGTCTCTGTCGGCGTGGCTTTTTTGCGTGGCGTTGGGGTTGACCT
GGGCTCCGCGGGCTGCTCTGGCTTTGGGAATACCTTGCACGCTGGTGATG
GCAGCAATATGCTCGAAGCACATGCCCCGGCCCAACGTGAAGCGACGGAG
CGATTGA
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protein sequence of Ec-28_003430.1

>Ec-28_003430.1 ID=Ec-28_003430.1|Name=Ec-28_003430.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=119bp
MPVSQVALAMARQLSQQLDGQRETLERRATTAEALRDVSRQKCSDCLENH
MGRNQAAEVPARLAGLVGGSLSAWLFCVALGLTWAPRAALALGIPCTLVM
AAICSKHMPRPNVKRRSD*
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mRNA from alignment at chr_28:3251308..3252895+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-28_003430.1 ID=Ec-28_003430.1|Name=Ec-28_003430.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=1588bp|location=Sequence derived from alignment at chr_28:3251308..3252895+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCCGGTGTCGCAGGTGGCGTTGGCGATGGCACGGCAACTCTCCCAGCA
GGTGAGCACCAACCTGTCGTCCAATTTCTCTCCGTTGCAGGATCTTAGCC
CGTCCTGCTATGGTGGTGTGGCACACTCGCTCTGAGGTAGAGACGTTAAT
GGCGTGTACGGAATGTGTCCTCGAGATTCGGTACGTTCCCGGTGGTGGTG
GTGAAACGAGTTGAGGCATGCTGCTAACCCCGCAGCCCACGCCCTCGACA
CGGGCAATGAAATGGGCCCTCATCGCAGCTGGACGGCCAACGGGAGACTT
TGGAGCGAAGGGCGACGACGGCAGAGGCTTTGCGAGATGTTTCCAGGCAA
AAATGCAGCGACTGTCTCGAGAACCACATGGGAGTGAGTGAGTTGTGGTT
TACTGCTGTTCTGCCGCCGCTCCGTCCAAGAGACGGGTTGCTGCACAATC
TGCGTTGGCCTCCCCCCCTTGCCATTCATGCTGTGTGCTTAACTTTCACG
CTTCTTGCCCTCGGAAGAACCACCCGAGGCAACCTTCTGACCGACGTTTT
GTTTCATTGATTTTATTTGATTTGCATACGCTCATTATTGAGGTTGGGCA
AACTAGCAGATGCAGAAATCTTTGACGCACGAGGGTTCACGTACTTCCAC
ATTCCCCGAGACATAGACCTTCACGAATGAAGCCTTCCCTTCTAGCTAAC
TTGGCGCAGCCCGCCTACCATGCTTCCAATGACCTTCGTAAATGTCGGAA
GGGATCCCGTACCGACCCACTCCACGATCTTCCGTCTTGCACACCACTCC
AACGAACCCTGATGGACGTAGAAACGGCTAACTTGGAAGGTTCGAGCAGC
TGAGTTGTGAACGAACATAACATGTCTTTGTGTGTGATGCTACGTTTGTT
CAGCGAAATCAAGCTGCTGAGGTACCAGCGAGATTAGCCGGACTGGTGGG
GGGGTCTCTGTCGGCGTGGCTTTTTTGCGTGGCGTTGGGGTTGACCTGGG
CTCCGCGGGCTGCTCTGGCTTTGGTGAGGAATAAACTTGTTTGATGATGA
AGGAAGTGTCTCCCTAGGTTTTTTCAACAGCTCAGACTGTGTCGCCCAGG
GTCAGAAAGTGCACCTGCGCAGGCGTTTTGATCCCGACCACCAATTAGCA
AAGCATTTGACGTCTTCTTTGCCTCGATTTCTTGGCACGTGTACTTCGTT
GCTGCTTCGAGTTCCCCGCCTTCCATCGCCGAGCATGTTGCCACCTCGCC
ATTCATGTCTGTAGCTGTAGACCTTGTGTCCAACGTGTACATCTAGAGTT
GGCCTGCATCGACCATTTGTGTTCGGCCAGTAGCGGCCTGCTGATGTTTC
TCGTGCGCACTTTCGTTACTTGCGCCGTTTTTTGACGTAGTCCTTTCCTT
AATATTCAGCCTTTCTCTTCCTCAAATTTGGGAGTCCATCTACGTAGTCC
GGGTTCGAAACACTTTCCGTCAATCACTCTCGCACCCTTGCCCCTTTTTT
CTTGAAGGGAATACCTTGCACGCTGGTGATGGCAGCAATATGCTCGAAGC
ACATGCCCCGGCCCAACGTGAAGCGACGGAGCGATTGA
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Coding sequence (CDS) from alignment at chr_28:3251308..3252895+

>Ec-28_003430.1 ID=Ec-28_003430.1|Name=Ec-28_003430.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=357bp|location=Sequence derived from alignment at chr_28:3251308..3252895+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCCGGTGTCGCAGGTGGCGTTGGCGATGGCACGGCAACTCTCCCAGCA
GCTGGACGGCCAACGGGAGACTTTGGAGCGAAGGGCGACGACGGCAGAGG
CTTTGCGAGATGTTTCCAGGCAAAAATGCAGCGACTGTCTCGAGAACCAC
ATGGGACGAAATCAAGCTGCTGAGGTACCAGCGAGATTAGCCGGACTGGT
GGGGGGGTCTCTGTCGGCGTGGCTTTTTTGCGTGGCGTTGGGGTTGACCT
GGGCTCCGCGGGCTGCTCTGGCTTTGGGAATACCTTGCACGCTGGTGATG
GCAGCAATATGCTCGAAGCACATGCCCCGGCCCAACGTGAAGCGACGGAG
CGATTGA
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Synonyms
The feature 'Ec-28_003430.1' has the following synonyms
Synonym
Esi009_0254
Esi_009_0254