Ec-00_001970.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_001970.1
Unique NameEc-00_001970.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length50
Homology
The following BLAST results are available for this feature:
BLAST of Ec-00_001970.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:2210276..2210492 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length217
Hectar predicted targeting categoryno signal peptide or anchor
Gene idEc-00_001970.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_001970Ec-00_001970Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 2210276..2210492 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_001970.1.1Ec-00_001970.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 2210276..2210492 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0019705UTR:Ec-00_001970.1Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_00 2210276..2210310 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_001970.1CDS:Ec-00_001970.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 2210311..2210460 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0019703UTR:Ec-00_001970.1Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_00 2210461..2210492 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_001970.1Ec-00_001970.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 2210311..2210460 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_001970.1 ID=Ec-00_001970.1|Name=Ec-00_001970.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=50bp
MEISLSWDGRGLPGRGVSRARVARREIENVPDSTHPGCRARGAVTCPGV*
back to top

spliced messenger RNA

>Ec-00_001970.1 ID=Ec-00_001970.1|Name=Ec-00_001970.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=217bp|location=Sequence derived from alignment at chr_00:2210276..2210492+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
GGGGGGGGGGGGGGGGGGGTCGTTTTCTATTTCTAATGGAAATTTCCCTT
TCCTGGGACGGTCGTGGGCTGCCTGGCCGCGGTGTAAGCAGAGCACGCGT
TGCACGGCGCGAGATCGAAAACGTTCCTGATTCTACACATCCTGGCTGCC
GTGCACGTGGCGCCGTTACATGCCCGGGTGTGTAGCCGAGAAGGTGTTTG
GGTTTGGTAGGCATGCA
back to top

protein sequence of Ec-00_001970.1

>Ec-00_001970.1 ID=Ec-00_001970.1|Name=Ec-00_001970.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=50bp
MEISLSWDGRGLPGRGVSRARVARREIENVPDSTHPGCRARGAVTCPGV*
back to top

mRNA from alignment at chr_00:2210276..2210492+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_001970.1 ID=Ec-00_001970.1|Name=Ec-00_001970.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=217bp|location=Sequence derived from alignment at chr_00:2210276..2210492+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
GGGGGGGGGGGGGGGGGGGTCGTTTTCTATTTCTAATGGAAATTTCCCTT
TCCTGGGACGGTCGTGGGCTGCCTGGCCGCGGTGTAAGCAGAGCACGCGT
TGCACGGCGCGAGATCGAAAACGTTCCTGATTCTACACATCCTGGCTGCC
GTGCACGTGGCGCCGTTACATGCCCGGGTGTGTAGCCGAGAAGGTGTTTG
GGTTTGGTAGGCATGCA
back to top

Coding sequence (CDS) from alignment at chr_00:2210276..2210492+

>Ec-00_001970.1 ID=Ec-00_001970.1|Name=Ec-00_001970.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=150bp|location=Sequence derived from alignment at chr_00:2210276..2210492+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGAAATTTCCCTTTCCTGGGACGGTCGTGGGCTGCCTGGCCGCGGTGT
AAGCAGAGCACGCGTTGCACGGCGCGAGATCGAAAACGTTCCTGATTCTA
CACATCCTGGCTGCCGTGCACGTGGCGCCGTTACATGCCCGGGTGTGTAG
back to top
Synonyms
The feature 'Ec-00_001970.1' has the following synonyms
Synonym
Esi013_0247
Esi_013_0247