Ec-27_005600.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-27_005600.1
Unique NameEc-27_005600.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length201
Homology
[Close]
BLAST of Ec-27_005600.1 vs. uniprot
Match: D8LB17_ECTSI (PINc domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB17_ECTSI)

HSP 1 Score: 401 bits (1030), Expect = 2.200e-141
Identity = 200/200 (100.00%), Postives = 200/200 (100.00%), Query Frame = 1 
Query:    1 MGKAKKSRAVRVKFAQAKRLLSPKDCRLKGNQEKEEAKRKKAKEAETNHVKQVPTAMFFAHNTALGPPYHVLIDTNFINFSIKNKLDIVKAMMDCLLAKAIPCVTDCVVAELEKLGPKYRVALRLSKDPRFQRLPCSHTGTYADDCLVQRAEQHRCYIVATCDKELKRRIRKIPGVPIMYISNRKFSIERMAEAFGAPPT 600
            MGKAKKSRAVRVKFAQAKRLLSPKDCRLKGNQEKEEAKRKKAKEAETNHVKQVPTAMFFAHNTALGPPYHVLIDTNFINFSIKNKLDIVKAMMDCLLAKAIPCVTDCVVAELEKLGPKYRVALRLSKDPRFQRLPCSHTGTYADDCLVQRAEQHRCYIVATCDKELKRRIRKIPGVPIMYISNRKFSIERMAEAFGAPPT
Sbjct:    1 MGKAKKSRAVRVKFAQAKRLLSPKDCRLKGNQEKEEAKRKKAKEAETNHVKQVPTAMFFAHNTALGPPYHVLIDTNFINFSIKNKLDIVKAMMDCLLAKAIPCVTDCVVAELEKLGPKYRVALRLSKDPRFQRLPCSHTGTYADDCLVQRAEQHRCYIVATCDKELKRRIRKIPGVPIMYISNRKFSIERMAEAFGAPPT 200
[Close]
BLAST of Ec-27_005600.1 vs. uniprot
Match: A0A836CF02_9STRA (Fcf1-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CF02_9STRA)

HSP 1 Score: 330 bits (847), Expect = 1.730e-113
Identity = 160/200 (80.00%), Postives = 180/200 (90.00%), Query Frame = 1 
Query:    1 MGKAKKSRAVRVKFAQAKRLLSPKDCRLKGNQEKEEAKRKKAKEAETNHVKQVPTAMFFAHNTALGPPYHVLIDTNFINFSIKNKLDIVKAMMDCLLAKAIPCVTDCVVAELEKLGPKYRVALRLSKDPRFQRLPCSHTGTYADDCLVQRAEQHRCYIVATCDKELKRRIRKIPGVPIMYISNRKFSIERMAEAFGAPPT 600
            MG+AKK RAV+VKFAQ+KRL+SPKD RLK   +K E K  KAKE ET  V Q P+AMFF +NTALGPPYHV++DTNFINFSIKNKLD+VK+MMDCLLAKA PC+TDCV+AELEKLGPKYR+ALRL+KD RFQRLPCSH GTYADDC++QRAEQHRCYIVATCDKELKRRIRKI GVPIMYISNRK++IERM EAFGAPP+
Sbjct:    1 MGRAKKQRAVKVKFAQSKRLISPKDPRLKEVAKKAEEKAAKAKEKETRQVTQTPSAMFFKYNTALGPPYHVIVDTNFINFSIKNKLDMVKSMMDCLLAKATPCITDCVIAELEKLGPKYRIALRLAKDERFQRLPCSHKGTYADDCILQRAEQHRCYIVATCDKELKRRIRKIAGVPIMYISNRKYTIERMPEAFGAPPS 200
[Close]
BLAST of Ec-27_005600.1 vs. uniprot
Match: A0A397JSP6_9GLOM (PINc domain-containing protein n=2 Tax=Glomeromycetes TaxID=214506 RepID=A0A397JSP6_9GLOM)

HSP 1 Score: 298 bits (764), Expect = 1.410e-100
Identity = 139/198 (70.20%), Postives = 177/198 (89.39%), Query Frame = 1 
Query:    1 MGKAKKSRAVRVKFAQAKRLLSPKDCRLKGNQEKEEAKRKKAKEAETNHVKQVPTAMFFAHNTALGPPYHVLIDTNFINFSIKNKLDIVKAMMDCLLAKAIPCVTDCVVAELEKLGPKYRVALRLSKDPRFQRLPCSHTGTYADDCLVQRAEQHRCYIVATCDKELKRRIRKIPGVPIMYISNRKFSIERMAEAFGAP 594
            MGKAK++R    KFA+AKRLL+PKD RLK  QEK++ K ++ +++E  +V QV +++FF +NTALGPPYHVL+DTNFINFSI+NKL++V+AMMDCL AK+IPC+TDCV+AELEKLGPKYR+ALR+++DPRF+RLPC+H GTYADDCLVQR  QH+CYIVATCD++LKRRIRKIPG+PIMYIS RK++IER+ EA+GAP
Sbjct:   24 MGKAKRTR----KFAEAKRLLNPKDSRLKSVQEKQKTKEEQKRKSEVRNVPQVASSLFFRYNTALGPPYHVLVDTNFINFSIQNKLELVQAMMDCLYAKSIPCITDCVMAELEKLGPKYRIALRIARDPRFERLPCTHKGTYADDCLVQRVMQHKCYIVATCDRDLKRRIRKIPGIPIMYISKRKYTIERLPEAYGAP 217
[Close]
BLAST of Ec-27_005600.1 vs. uniprot
Match: A0A812Y1D1_SYMMI (FCF1 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812Y1D1_SYMMI)

HSP 1 Score: 295 bits (754), Expect = 2.370e-99
Identity = 143/203 (70.44%), Postives = 171/203 (84.24%), Query Frame = 1 
Query:    1 MGKAKKSRAVRVKFAQAKRLLSPKDCRLKGNQEKEEAKRKKAKEAE---TNHVKQVPTAMFFAHNTALGPPYHVLIDTNFINFSIKNKLDIVKAMMDCLLAKAIPCVTDCVVAELEKLGPKYRVALRLSKDPRFQRLPCSHTGTYADDCLVQRAEQHRCYIVATCDKELKRRIRKIPGVPIMYISNRKFSIERMAEAFGAPPT 600
            M K KK+R + VK     +++S KD R+K NQEK+ A  +KA +A+   + HV Q PTA+FF HNT LGPPYHVL+DTNFINF+IKNKL+I K+MMDCLLAK IPC+TDCV+AELEKLG KYR+ALRL+KDPRF+RLPCSH GTYADDCL+ R +QHRCYIVATCDK+LKRRIRK+PGVPIMYI++RKFS+ERM EAFGAP T
Sbjct:    1 MTKQKKTRKIAVK-----KIISGKDPRIKANQEKQAADAQKALKAQKEASRHVTQAPTALFFTHNTQLGPPYHVLVDTNFINFAIKNKLEIYKSMMDCLLAKCIPCITDCVMAELEKLGTKYRLALRLAKDPRFERLPCSHPGTYADDCLLHRCQQHRCYIVATCDKDLKRRIRKVPGVPIMYINSRKFSVERMPEAFGAPKT 198
[Close]
BLAST of Ec-27_005600.1 vs. uniprot
Match: A0A1Y1ZF27_9FUNG (Fcf1-domain-containing protein n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1ZF27_9FUNG)

HSP 1 Score: 287 bits (735), Expect = 1.730e-96
Identity = 134/198 (67.68%), Postives = 170/198 (85.86%), Query Frame = 1 
Query:    1 MGKAKKSRAVRVKFAQAKRLLSPKDCRLKGNQEKEEAKRKKAKEAETNHVKQVPTAMFFAHNTALGPPYHVLIDTNFINFSIKNKLDIVKAMMDCLLAKAIPCVTDCVVAELEKLGPKYRVALRLSKDPRFQRLPCSHTGTYADDCLVQRAEQHRCYIVATCDKELKRRIRKIPGVPIMYISNRKFSIERMAEAFGAP 594
            MGKAKK+R    +F   KR+L+PKD RLK NQEK + K ++ +++   H+ QV +++FF +NTALGPPYHVL+DTNFINFSI+NKL++VK+MMDCL AK IPC+TDCV+AELEKLGPKYRVALR+++DPRF+RLPC+H GTYADDCLV R  QH+CYIVATCD++LKRRIRKIPG+PIMYI+  K++IER+ EA+GAP
Sbjct:    1 MGKAKKTR----QFGLVKRMLNPKDARLKENQEKLKKKEEEKEKSLVTHIPQVASSLFFRYNTALGPPYHVLVDTNFINFSIQNKLELVKSMMDCLYAKCIPCITDCVMAELEKLGPKYRVALRVARDPRFERLPCAHKGTYADDCLVNRVMQHKCYIVATCDRDLKRRIRKIPGIPIMYIAQHKYTIERLPEAYGAP 194
[Close]
BLAST of Ec-27_005600.1 vs. uniprot
Match: A0A397WAQ8_9GLOM (Fcf1-domain-containing protein n=2 Tax=Gigaspora TaxID=4873 RepID=A0A397WAQ8_9GLOM)

HSP 1 Score: 286 bits (732), Expect = 4.770e-96
Identity = 134/196 (68.37%), Postives = 169/196 (86.22%), Query Frame = 1 
Query:    1 MGKAKKSRAVRVKFAQAKRLLSPKDCRLKGNQEKEEAKRKKAKEAETNHVKQVPTAMFFAHNTALGPPYHVLIDTNFINFSIKNKLDIVKAMMDCLLAKAIPCVTDCVVAELEKLGPKYRVALRLSKDPRFQRLPCSHTGTYADDCLVQRAEQHRCYIVATCDKELKRRIRKIPGVPIMYISNRKFSIERMAEAFG 588
            MGKAKK+R    +FA+ KRLL+PKD RLK  QEK++ K ++ ++    +V QV +++FF HN ALGPPYH+L+DTNFINFSI+NKL++V+AMMDCL AK IPC+TDCV+AELEKLGPKYR+ALR+++DPRF+RLPCSH GTYADDCLV+R  QH+CYIVATCDK+LKRRIRKIPG+PIMYIS RK++IER+ E +G
Sbjct:    1 MGKAKKTR----RFAEVKRLLNPKDSRLKSVQEKQKKKNEEKEKETIRNVPQVASSLFFRHNAALGPPYHILVDTNFINFSIQNKLELVQAMMDCLYAKCIPCITDCVMAELEKLGPKYRIALRVARDPRFERLPCSHKGTYADDCLVKRVMQHKCYIVATCDKDLKRRIRKIPGIPIMYISKRKYTIERLPENYG 192
[Close]
BLAST of Ec-27_005600.1 vs. uniprot
Match: UPI0009E60673 (rRNA-processing protein FCF1 homolog n=2 Tax=Scleractinia TaxID=6125 RepID=UPI0009E60673)

HSP 1 Score: 285 bits (729), Expect = 1.410e-95
Identity = 135/198 (68.18%), Postives = 164/198 (82.83%), Query Frame = 1 
Query:    1 MGKAKKSRAVRVKFAQAKRLLSPKDCRLKGNQEKEEAKRKKAKEAETNHVKQVPTAMFFAHNTALGPPYHVLIDTNFINFSIKNKLDIVKAMMDCLLAKAIPCVTDCVVAELEKLGPKYRVALRLSKDPRFQRLPCSHTGTYADDCLVQRAEQHRCYIVATCDKELKRRIRKIPGVPIMYISNRKFSIERMAEAFGAP 594
            MGKAKK+R    KFA  KR++SPKD R+K NQE         ++ ET HV+Q  +A+FF +NT LGPPY++L+DTNFINFSIKNKLDIVK+MMDCL AK +PC+TDCV+AELEKLG KYRVALR++KDPRF RLPC H GTYADDC+V R +QH+CYIVATCD++LKRRIRK+PGVPIMYIS  K++IERM +A+GAP
Sbjct:    1 MGKAKKTR----KFAAVKRMISPKDMRIKQNQEXXXXXXXXXEDNETRHVEQSSSALFFQYNTQLGPPYYILVDTNFINFSIKNKLDIVKSMMDCLYAKCVPCITDCVMAELEKLGSKYRVALRMAKDPRFDRLPCMHRGTYADDCIVNRIQQHKCYIVATCDRDLKRRIRKVPGVPIMYISQHKYTIERMPDAYGAP 194
[Close]
BLAST of Ec-27_005600.1 vs. uniprot
Match: UPI00077A9C87 (rRNA-processing protein FCF1 homolog n=2 Tax=Acropora TaxID=6127 RepID=UPI00077A9C87)

HSP 1 Score: 284 bits (726), Expect = 4.050e-95
Identity = 135/198 (68.18%), Postives = 164/198 (82.83%), Query Frame = 1 
Query:    1 MGKAKKSRAVRVKFAQAKRLLSPKDCRLKGNQEKEEAKRKKAKEAETNHVKQVPTAMFFAHNTALGPPYHVLIDTNFINFSIKNKLDIVKAMMDCLLAKAIPCVTDCVVAELEKLGPKYRVALRLSKDPRFQRLPCSHTGTYADDCLVQRAEQHRCYIVATCDKELKRRIRKIPGVPIMYISNRKFSIERMAEAFGAP 594
            MGK K    V  KF   KR++SPKD R+K NQEKE  KRKKA+E  TNHV+QV +A+FF +NT LGPP+ VL+DTNFINFSI NKLDI ++MMDCL AK  PC+TDCV+ E+EKLG KYRVALR++KDPRF+RLPC H G YADDCLV R +QH+CYIVATCD++LKRRIRKIPGVPIM+I++ ++SIERM +A+GAP
Sbjct:    1 MGKTK----VIKKFTSMKRMISPKDSRIKENQEKEMEKRKKAEETATNHVEQVSSALFFQYNTQLGPPFFVLVDTNFINFSISNKLDIFQSMMDCLYAKCTPCITDCVMGEIEKLGRKYRVALRMAKDPRFERLPCMHKGIYADDCLVNRVQQHKCYIVATCDRDLKRRIRKIPGVPIMFITHHRYSIERMPDAYGAP 194
[Close]
BLAST of Ec-27_005600.1 vs. uniprot
Match: U9SSR2_RHIID (Fcf1-domain-containing protein n=8 Tax=Eukaryota TaxID=2759 RepID=U9SSR2_RHIID)

HSP 1 Score: 283 bits (725), Expect = 5.550e-95
Identity = 131/198 (66.16%), Postives = 170/198 (85.86%), Query Frame = 1 
Query:    1 MGKAKKSRAVRVKFAQAKRLLSPKDCRLKGNQEKEEAKRKKAKEAETNHVKQVPTAMFFAHNTALGPPYHVLIDTNFINFSIKNKLDIVKAMMDCLLAKAIPCVTDCVVAELEKLGPKYRVALRLSKDPRFQRLPCSHTGTYADDCLVQRAEQHRCYIVATCDKELKRRIRKIPGVPIMYISNRKFSIERMAEAFGAP 594
            MGKAKK+R    KFA+ KRL++P D RLK  QEK++ ++++  +    +V QV +++FF +NTALGPPY V++DTNFINFSI+NKL++V++MMDCL AK IPC+TDCV+AELEKLGPKYR+ALR+++DPRF+RLPC H GTYADDCLVQR  QH+CYIVATCD++LKRRIRKIPG+PIMYIS R+++IER+ EA+GAP
Sbjct:    1 MGKAKKTR----KFAEVKRLINPADSRLKSIQEKQKKRQEEKTKESVRNVPQVASSLFFRYNTALGPPYRVMVDTNFINFSIQNKLELVRSMMDCLYAKCIPCITDCVMAELEKLGPKYRIALRVARDPRFERLPCMHKGTYADDCLVQRVSQHKCYIVATCDRDLKRRIRKIPGIPIMYISKRRYTIERLPEAYGAP 194
[Close]
BLAST of Ec-27_005600.1 vs. uniprot
Match: W2G0I5_PHYPR (PINc domain-containing protein n=7 Tax=Phytophthora parasitica TaxID=4792 RepID=W2G0I5_PHYPR)

HSP 1 Score: 282 bits (722), Expect = 3.150e-94
Identity = 138/198 (69.70%), Postives = 167/198 (84.34%), Query Frame = 1 
Query:    1 MGKAKKSRAVRVKFAQAKRLLSPKDCRLKGNQEK-EEAKRKKAKEAETNHVKQVPTAMFFAHNTALGPPYHVLIDTNFINFSIKNKLDIVKAMMDCLLAKAIPCVTDCVVAELEKLGPKYRVALRLSKDPRFQRLPCSHTGTYADDCLVQRAEQHRCYIVATCDKELKRRIRKIPGVPIMYISNRKFSIERMAEAFGA 591
            MGKAKK+R    KFA  KR++SP+D R+   ++   + + KK KEAE   + Q+P+ MFF +N+ALGPPY+VL+DTNFINFSIKNKL++V AMMDCLLAK+ PC+TDCV+AELEKLG KYRVALRL+KDPRF+RLPC+H GTYADDCLVQR +QHRCYIVATCD+ELKRRIRK+PGVPIMYISNRK+ IER+ EA  A
Sbjct:   19 MGKAKKTR----KFAAVKRMISPRDTRINSVRKAVAKVEEKKRKEAEPKQIDQIPSNMFFKYNSALGPPYNVLVDTNFINFSIKNKLEVVSAMMDCLLAKSTPCITDCVMAELEKLGHKYRVALRLAKDPRFERLPCTHKGTYADDCLVQRVQQHRCYIVATCDRELKRRIRKVPGVPIMYISNRKYVIERLPEANAA 212
The following BLAST results are available for this feature:
BLAST of Ec-27_005600.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LB17_ECTSI2.200e-141100.00PINc domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A836CF02_9STRA1.730e-11380.00Fcf1-domain-containing protein n=1 Tax=Tribonema m... [more]
A0A397JSP6_9GLOM1.410e-10070.20PINc domain-containing protein n=2 Tax=Glomeromyce... [more]
A0A812Y1D1_SYMMI2.370e-9970.44FCF1 protein n=1 Tax=Symbiodinium microadriaticum ... [more]
A0A1Y1ZF27_9FUNG1.730e-9667.68Fcf1-domain-containing protein n=1 Tax=Basidiobolu... [more]
A0A397WAQ8_9GLOM4.770e-9668.37Fcf1-domain-containing protein n=2 Tax=Gigaspora T... [more]
UPI0009E606731.410e-9568.18rRNA-processing protein FCF1 homolog n=2 Tax=Scler... [more]
UPI00077A9C874.050e-9568.18rRNA-processing protein FCF1 homolog n=2 Tax=Acrop... [more]
U9SSR2_RHIID5.550e-9566.16Fcf1-domain-containing protein n=8 Tax=Eukaryota T... [more]
W2G0I5_PHYPR3.150e-9469.70PINc domain-containing protein n=7 Tax=Phytophthor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_27contigchr_27:5132676..5135982 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score395.2
Seed ortholog evalue1.8e-107
Seed eggNOG ortholog2880.D8LB17
Preferred nameFCF1
Length603
KEGG rclassRC00006,RC00868,RC00887
KEGG koko:K14566,ko:K19562
KEGG ReactionR03182,R03231
KEGG Pathwayko00780,ko01100,ko03008,map00780,map01100,map03008
KEGG ModuleM00123
Hectar predicted targeting categoryother localisation
Gene idEc-27_005600.1
GOsGO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000472,GO:0000478,GO:0000479,GO:0000480,GO:0000966,GO:0000967,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030490,GO:0030684,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:1901360,GO:1990904
EggNOG free text desc.maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
EggNOG OGsCOG1412@1,KOG3165@2759
EC2.6.1.62,6.3.3.3
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-27_005600Ec-27_005600Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_27 5132676..5135982 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_005600.1.4Ec-27_005600.1.4Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 5132676..5132831 -
Ec-27_005600.1.3Ec-27_005600.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 5133302..5133499 -
Ec-27_005600.1.2Ec-27_005600.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 5134779..5134904 -
Ec-27_005600.1.1Ec-27_005600.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_27 5135860..5135982 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_005600.1CDS:Ec-27_005600.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_27 5132676..5132831 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-27_005600.1Ec-27_005600.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_27 5132676..5135982 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-27_005600.1 ID=Ec-27_005600.1|Name=Ec-27_005600.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=201bp
MGKAKKSRAVRVKFAQAKRLLSPKDCRLKGNQEKEEAKRKKAKEAETNHV
KQVPTAMFFAHNTALGPPYHVLIDTNFINFSIKNKLDIVKAMMDCLLAKA
IPCVTDCVVAELEKLGPKYRVALRLSKDPRFQRLPCSHTGTYADDCLVQR
AEQHRCYIVATCDKELKRRIRKIPGVPIMYISNRKFSIERMAEAFGAPPT
*
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spliced messenger RNA

>Ec-27_005600.1 ID=Ec-27_005600.1|Name=Ec-27_005600.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=603bp|location=Sequence derived from alignment at chr_27:5132676..5135982- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGAAGGCCAAGAAATCCCGAGCTGTGCGGGTGAAGTTCGCCCAGGC
CAAGCGCTTGCTGAGCCCGAAGGACTGCCGCTTGAAGGGGAACCAGGAGA
AGGAAGAAGCCAAAAGAAAGAAGGCGAAAGAGGCGGAGACGAATCACGTG
AAACAAGTCCCCACTGCCATGTTCTTCGCGCACAACACCGCCCTCGGCCC
TCCGTACCACGTTCTCATCGACACCAACTTCATCAACTTCTCCATCAAGA
ACAAGCTGGACATCGTGAAGGCCATGATGGACTGCCTGCTGGCGAAGGCC
ATCCCGTGCGTGACGGACTGCGTGGTGGCAGAGCTGGAGAAGCTTGGGCC
CAAGTATCGCGTGGCACTGCGACTGTCCAAGGACCCTAGGTTTCAGAGGC
TGCCGTGCTCCCATACGGGGACTTACGCGGATGACTGCTTGGTTCAGCGG
GCGGAGCAGCACCGATGCTACATCGTGGCCACTTGCGACAAGGAGCTGAA
GCGCCGGATACGCAAAATTCCGGGCGTGCCCATCATGTACATCTCCAACA
GAAAATTCTCGATCGAACGAATGGCCGAGGCCTTTGGGGCGCCGCCGACC
TAA
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protein sequence of Ec-27_005600.1

>Ec-27_005600.1 ID=Ec-27_005600.1|Name=Ec-27_005600.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=201bp
MGKAKKSRAVRVKFAQAKRLLSPKDCRLKGNQEKEEAKRKKAKEAETNHV
KQVPTAMFFAHNTALGPPYHVLIDTNFINFSIKNKLDIVKAMMDCLLAKA
IPCVTDCVVAELEKLGPKYRVALRLSKDPRFQRLPCSHTGTYADDCLVQR
AEQHRCYIVATCDKELKRRIRKIPGVPIMYISNRKFSIERMAEAFGAPPT
*
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mRNA from alignment at chr_27:5132676..5135982-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-27_005600.1 ID=Ec-27_005600.1|Name=Ec-27_005600.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=3307bp|location=Sequence derived from alignment at chr_27:5132676..5135982- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGGGAAGGCCAAGAAATCCCGAGCTGTGCGGGTGAAGTTCGCCCAGGC
CAAGCGCTTGCTGAGCCCGAAGGACTGCCGCTTGAAGGGGAACCAGGAGA
AGGAAGAAGCCAAAAGAAAGAAGGTGAGAGGAACGCAACAAGCTAACATA
TGAGAAGAGGGACACGTGAGACCTGCCTTGTCCGCTGTACAGCAGGTGCG
CTGCTGGACTTTACGAAGAATGGCAGGAATCCCTCCCTACCAGCCGCGGT
GGACACCCGCGTCCGTGATGGACGCACCCGACGGTCCCCATTGTACTTGG
TACTGCTGTACATACTACTAGTGTTTTGTGGGTCGTTTTGTGGTTCGCAA
CACGTTGTGTGGTGAGAGATGGGGACGGATGCTTTTTGGACGAGGGTGGT
GGTATCTTCCGTGATACACTTGGAGAGCCCAGTACTTCCGTATTTAGACT
TGTGTGCGCAGCATGCTTACGTCGTTCTCGCCAAGGTTGCGCCGCGCCGT
GTCCCTGTGGAGAAATCAAGCGGGCAAATTCGACCGACTAGTGCGCAGCT
TTCCAGGATCATGATCCACAGCACGTTTGATCGCCATCTAGAACCGCGGC
CACTAAATAGCGCTCTCTGATGGGCTTGTTTGCCTCGACAAGCACGACAA
TTGACGGTCATTCGTGCTGGCTATAGAAAGGTTGTGTCCAGTTCGCAGAG
CGTGCTGTCGAGGTCTAGGTTGGACGCCAGACATGCAACTTGAGCCCATC
TCTTGAGAAGAACCTCGCGGTATCGGACGTGTGACTCGTAGGGAATGGCC
ATCCTCAATGGTGTCAGCGTTTGTGCGGCTTCAACAGTGTGTGAGGTCGC
ACTTAGATGAGTTGTTGATCCCACTTGTCTTGACCTCCGTTGCACCCCAT
GGAAAAATGGGAACAAATGGGCCATTTTTTTTTTTGTTCATGACAACGAA
AACCGCTGACCTGTCGAATTGATCGTCTTGCGCTCGGGCCTTTGGTATCA
TCGCTGGTCGCGTGTTTCCTCACTCTCTATGTCAATCGCGACTCGTTTTC
GAAACCATCGATCATGTTTTGTGTGCAGGCGAAAGAGGCGGAGACGAATC
ACGTGAAACAAGTCCCCACTGCCATGTTCTTCGCGCACAACACCGCCCTC
GGCCCTCCGTACCACGTTCTCATCGACACCAACTTCATCAACTTCTCCAT
CAAGGTTCGATCCCTGTAGTGTGGTGGGTGTCGGAGGGGAGAAGATAAGT
CGAAATGTGTAGTGTCGAGGTTTGATCTGTACCCAAGGGTCGTCTGAAGG
CGGGTAAAAGCCTTTGCGCACATCCAGACAGAGAAGTCTGCGTGACGTTG
AGACCGAAGTCTGTTCCGACAGAAGTCTGTTGAGGCAGTGATCGAAGACG
ATGTTGTTGCGAAATGCCGCTGCTTCTGGAGCTTGTAGTTCTTTTCAGTC
GTGTTCACTTCACAGCTTACTTGCAGAGTTGAGATGTTGAGGGAATGTTG
GGAGTGAGCGCGGTGGGGCTCGCAACTCCTCGCGATTTCGCTCCAACTAC
AATCCTCAGATCAACAATCGATACATTCACAAACTGTTCGCTAGACGTTA
CGTTCTACCAAACGTCAGTCACTTTTCACACCGCATCCACGTATCGATGC
ATACAGTAATCATGCAGCTGTTGCACTGTATTTAACACGATGCACATTGA
TAGGTATGTAGCGCGGTGCGGTTGCTTGTTAGCCTTTCCGTTGTGTTCGC
TCCGGGGCGTATGTCCGAAGAAACTCAAGCTTCTCATGGGAGCGTTACTG
GAACCACGGGATGGCCATCAAACTCTCTTTTTTTTCACCCGCGATGTTTT
TTCATTGTCGCACGGCCGGTCACCCCGGTGGTCTAGTGGTAACCTCGAAA
CCGCGATATAGTCGCAAGGGTCGTGAGTTCGAATCCCCATGGGGGTGAAA
AATTTACAAATTTGCGGGTGAAAGCGAAAAACATCTGACAATCTCTCGTG
AGCACCAAACTTTGACGTTAGCACCGTTGACGAGGGAAAGGGACGGCTGG
ACCCTTCTCGCGAAAAATATAACAATTCAGCACGCACCGCAGGAGGAAGG
TGGGGCACGAAAATATATGCAAGACAAAAGGTCCGGTGTTTACCCTGACC
CTGGATGGTTGTAGTTGTAAGAAAAAATACACTGAAAAGTGTAGTACACG
TCTCACCACGAAAAATGAGGGGACTGTCGCCATAATAAATAGGACGAAAA
CACAACACAAACATAGGTGGATCGATTTGTACTTTTAGGAAGGGAAGTGA
AAAGAGTTGGAGTCGTAGAACGCGGAAAGCTGCCGTCACCCTTGCTGTGA
GTGAGAAGTAAATCAGGGGGTGGACTTGCCAATATTCTAGCTTCGGCCAA
AGCCGAACACATCGAGTGGCACGTTCAGACTTCGACAATCTCTTGTTTTC
CCACCCCCTGAACACGTGACGCACTCTCAACAGAACAAGCTGGACATCGT
GAAGGCCATGATGGACTGCCTGCTGGCGAAGGCCATCCCGTGCGTGACGG
ACTGCGTGGTGGCAGAGCTGGAGAAGCTTGGGCCCAAGTATCGCGTGGCA
CTGCGACTGTCCAAGGACCCTAGGTTTCAGAGGCTGCCGTGCTCCCATAC
GGGGACTTACGCGGATGACTGCTTGGTTCAGGTGAGTTTGACGTTGTTGT
ACGGGAAGCACGTTGCTGCTTTTCTATTTTGGCCCTGGCCAATGACCTCA
AGTGTCTGTAATTCGAAGGAGGCATTAGTGGGGCGCGGTGGTTGGTGCCG
GTGGTTCATGGACTGAGGCCTGGCCCATGCAAGGCTGTGGGACAATACGG
ATGGGGGGGTGGGGGAGGGGGAAGGGCCTTCGGACGACAGAGGGGCACCC
CTAGCAGGAGTGCATGTCGGATAGCGACGAACTCGATGGTTCGCTCGTTA
CGTAGGTGCCCTGGAACGAGAGATGTCCAACCTTGCGCATTTGATGCGCC
GCGTGTGAATTTCGCTGATGCGTACTACTCTGTACCCATAGTTGGCCATG
TTGGAAGTGTCTTGAGAGGGTCAGGACCTCAACTTTTTGAAACCCTGAAC
CCCTTTTTTGTTGGCACCACCCCCCACCGATGTGCCATGTTTCGAAAACA
GCGGGCGGAGCAGCACCGATGCTACATCGTGGCCACTTGCGACAAGGAGC
TGAAGCGCCGGATACGCAAAATTCCGGGCGTGCCCATCATGTACATCTCC
AACAGAAAATTCTCGATCGAACGAATGGCCGAGGCCTTTGGGGCGCCGCC
GACCTAA
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Coding sequence (CDS) from alignment at chr_27:5132676..5135982-

>Ec-27_005600.1 ID=Ec-27_005600.1|Name=Ec-27_005600.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=603bp|location=Sequence derived from alignment at chr_27:5132676..5135982- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGGGGAAGGCCAAGAAATCCCGAGCTGTGCGGGTGAAGTTCGCCCAGGC
CAAGCGCTTGCTGAGCCCGAAGGACTGCCGCTTGAAGGGGAACCAGGAGA
AGGAAGAAGCCAAAAGAAAGAAGGCGAAAGAGGCGGAGACGAATCACGTG
AAACAAGTCCCCACTGCCATGTTCTTCGCGCACAACACCGCCCTCGGCCC
TCCGTACCACGTTCTCATCGACACCAACTTCATCAACTTCTCCATCAAGA
ACAAGCTGGACATCGTGAAGGCCATGATGGACTGCCTGCTGGCGAAGGCC
ATCCCGTGCGTGACGGACTGCGTGGTGGCAGAGCTGGAGAAGCTTGGGCC
CAAGTATCGCGTGGCACTGCGACTGTCCAAGGACCCTAGGTTTCAGAGGC
TGCCGTGCTCCCATACGGGGACTTACGCGGATGACTGCTTGGTTCAGCGG
GCGGAGCAGCACCGATGCTACATCGTGGCCACTTGCGACAAGGAGCTGAA
GCGCCGGATACGCAAAATTCCGGGCGTGCCCATCATGTACATCTCCAACA
GAAAATTCTCGATCGAACGAATGGCCGAGGCCTTTGGGGCGCCGCCGACC
TAA
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Synonyms
The feature 'Ec-27_005600.1' has the following synonyms
Synonym
Esi0000_0165
Esi_0000_0165