Ec-00_001580.2 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-00_001580.2
Unique NameEc-00_001580.2
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length275
Homology
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BLAST of Ec-00_001580.2 vs. uniprot
Match: D8LEB0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEB0_ECTSI)

HSP 1 Score: 384 bits (985), Expect = 1.110e-116
Identity = 306/336 (91.07%), Postives = 306/336 (91.07%), Query Frame = -1 
Query:    2 GHSEVSKQNSNGFAWWRPRSILRASLADVSLSTTNTSVVSXXXXXXXXXXXXXXXXXXXXXXXXXXXPSSLFDVAAAAQQQQFETQLKPKIQHHSNWTRGSRDGTEAPSPDEDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPEQGLLGSSSGKLKSLKLAPIGSEQLAKHTAAAAAVDSDRPGTPVRGGGIGSTWCVGPLQVRRQXXXXXXXXXXXXXXXXXXXXXXRTNHHAGAVGARFAVASEGGMGTLGEKATAQAGVGEGSWREEGMDDETAAEVSTTSVVYDVLAVDRGCGYCDTSVVPFPVEEGGQVAAERMRALTSGQGEFLAR 1009
            GHSEVSKQNSNGFAWWRPRSILRASLADVSLSTTNTSVVSXXXXXXXXXXXXXXXXXXXXXXXXXXXPSSLFDVAAAAQQQQFETQLKPKIQHHSNWTRGSRDGTEAPSPDEDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPEQGLLGSSSGKLKSLKLAPIGSEQLAKHTAAAAAVDSDRPGTPVRGGGIGSTWCVGPLQVRRQXXXXXXXXXXXXXXXXXXXXXXRTNHHAGAVGARFAVASEGGMGTLGEKATAQAGVGEGSWREEGMDDETAAE                              EGGQVAAERMRALTSGQGEFLAR
Sbjct:   22 GHSEVSKQNSNGFAWWRPRSILRASLADVSLSTTNTSVVSXXXXXXXXXXXXXXXXXXXXXXXXXXXPSSLFDVAAAAQQQQFETQLKPKIQHHSNWTRGSRDGTEAPSPDEDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPEQGLLGSSSGKLKSLKLAPIGSEQLAKHTAAAAAVDSDRPGTPVRGGGIGSTWCVGPLQVRRQXXXXXXXXXXXXXXXXXXXXXXRTNHHAGAVGARFAVASEGGMGTLGEKATAQAGVGEGSWREEGMDDETAAE------------------------------EGGQVAAERMRALTSGQGEFLAR 327
[Close]
BLAST of Ec-00_001580.2 vs. uniprot
Match: A0A6H5K5S8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5S8_9PHAE)

HSP 1 Score: 214 bits (545), Expect = 9.780e-61
Identity = 105/116 (90.52%), Postives = 106/116 (91.38%), Query Frame = 3 
Query: 1941 IAGGKVELSRDGKFLACLYEWDVSFVDVEEGVVTKRLRSEGSPG-----VSFALHPNGSEIVTASRSLLLRHWEIATGDCKRAIKAHDHIVRCMDYDGWVSCFACALLSRGRVTHL 2273
             +GGKVELSRDGKFLACLYEWDVSFVDVEEGVVTKRLRSEGS G     VSFALHPNGSEIVTASRSLLLRHWEIATGDCKRAIKAHDHIVRCMDYDGWV CFA AL SRGRVTHL
Sbjct:   27 FSGGKVELSRDGKFLACLYEWDVSFVDVEEGVVTKRLRSEGSSGGEEEIVSFALHPNGSEIVTASRSLLLRHWEIATGDCKRAIKAHDHIVRCMDYDGWVQCFAFALPSRGRVTHL 142
[Close]
BLAST of Ec-00_001580.2 vs. uniprot
Match: D8LEB1_ECTSI (Utp13 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEB1_ECTSI)

HSP 1 Score: 187 bits (474), Expect = 3.490e-44
Identity = 91/98 (92.86%), Postives = 92/98 (93.88%), Query Frame = 3 
Query: 1941 IAGGKVELSRDGKFLACLYEWDVSFVDVEEGVVTKRLRSEGSPG-----VSFALHPNGSEIVTASRSLLLRHWEIATGDCKRAIKAHDHIVRCMDYDG 2219
             +GGKVELSRDGKFLACLYEWDVSFVDVEEGVVTKRLRSEGSPG     VSFALHPNGSEIVTASRSLLLRHWEIATGDCKRAIKAHDHIVRCMDYDG
Sbjct:   27 FSGGKVELSRDGKFLACLYEWDVSFVDVEEGVVTKRLRSEGSPGGEEEIVSFALHPNGSEIVTASRSLLLRHWEIATGDCKRAIKAHDHIVRCMDYDG 124
[Close]
BLAST of Ec-00_001580.2 vs. uniprot
Match: A0A836CIZ1_9STRA (Utp13 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIZ1_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 5.040e-16
Identity = 57/137 (41.61%), Postives = 75/137 (54.74%), Query Frame = 3 
Query: 1872 ASTPCAVVHSSGQYLAWGHEWPCIAGGKVELSRDGKFLACLYEWDVSFVDVEEGVVTKRLRSEGSPG----------------VSFALHPNGSEIVTASRSLLLR------HWEIATGDCKRAIKAHDHIVRCMDYD 2216
            AST C  +  S ++          +GG V+LS DG+ LACL+  DVSF+++E G V + L      G                V FALHPNG+EIVTASR+LLLR      HW I    CKRAI+AH+ +V  M+Y+
Sbjct:   25 ASTFCRTLQVSRRHAG------AYSGGCVKLSSDGETLACLFGGDVSFLEIESGQVKRTLLKGAITGLEADEEEEEAEGREELVCFALHPNGAEIVTASRNLLLRRVPLPMHWNIGDAKCKRAIRAHEQVVLSMEYE 155
[Close]
BLAST of Ec-00_001580.2 vs. uniprot
Match: A0A8H7ZTD2_9FUNG (Quinon protein alcohol dehydrogenase-like superfamily n=1 Tax=Olpidium bornovanus TaxID=278681 RepID=A0A8H7ZTD2_9FUNG)

HSP 1 Score: 81.6 bits (200), Expect = 8.430e-12
Identity = 41/90 (45.56%), Postives = 55/90 (61.11%), Query Frame = 3 
Query: 1947 GGKVELSRDGKFLACLYEWDVSFVDVEEGVVTKRLRSEGSPGVSFALHPNGSEIVTASRSLLLRHWEIATGDCKRAIKAHDHIVRCMDYD 2216
            GGKV LS DGK L    + D+  V+V+ G    RL+ +     +FAL P+ + +V+ASRSLLL+ W +ATG C R  KAH+  V  MD D
Sbjct:   27 GGKVALSSDGKLLVTTVQEDIDIVEVDTGKKVHRLKGDSEIITTFALTPDDARVVSASRSLLLKVWNVATGSCDRQWKAHEAPVIVMDVD 116
[Close]
BLAST of Ec-00_001580.2 vs. uniprot
Match: A0A383VI50_TETOB (Utp13 domain-containing protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VI50_TETOB)

HSP 1 Score: 75.5 bits (184), Expect = 7.560e-10
Identity = 35/84 (41.67%), Postives = 50/84 (59.52%), Query Frame = 3 
Query: 1935 PCIAGGKVELSRDGKFLACLYEWDVSFVDVEEGVVTKRLRSEGSPGVSFALHPNGSEIVTASRSLLLRHWEIATGDCKRAIKAH 2186
            P   GG V ++RD K LAC    +V  +DV  G VTK L  +  P  + A+ P+   ++ ASRSL ++HW+ A+G+CKR  K H
Sbjct:   20 PFYTGGAVRVTRDHKHLACACGDEVKVLDVATGTVTKTLPGDSEPITALAISPDCRSLIAASRSLSVKHWDWASGECKRTWKPH 103
[Close]
BLAST of Ec-00_001580.2 vs. uniprot
Match: A0A7L3BAK2_9AVES (TBL3 protein (Fragment) n=1 Tax=Syrrhaptes paradoxus TaxID=302527 RepID=A0A7L3BAK2_9AVES)

HSP 1 Score: 72.4 bits (176), Expect = 4.120e-9
Identity = 42/120 (35.00%), Postives = 61/120 (50.83%), Query Frame = 3 
Query: 1863 RRAASTPCAVVHSSGQYLAWGHEWPCIAGGKVELSRDGKFLACLYEWDVSFVDVEEGVVTKRLRSEGSPGV-SFALHPNGSEIVTASRSLLLRHWEIATGDCKRAIKA-HDHIVRCMDYD 2216
            R + S PC+       +  W    PC  GG+V++SRDG+F+ C     ++ +DVE G +   L+ E    + SF L P+   +VT SR+LLL+ W      C R  KA H   V  M +D
Sbjct:    7 RGSLSFPCS-------FAVWRRLEPCYRGGRVQVSRDGRFMLCPCGTKLNVIDVETGALNHSLQQEDDEDITSFILSPDDEILVTGSRALLLKQWNWRENKCVRTWKAVHIAPVASMAFD 119
[Close]
BLAST of Ec-00_001580.2 vs. uniprot
Match: A0A197JMX3_9FUNG (WD40 repeat-like protein n=1 Tax=Linnemannia elongata AG-77 TaxID=1314771 RepID=A0A197JMX3_9FUNG)

HSP 1 Score: 71.6 bits (174), Expect = 1.020e-8
Identity = 39/116 (33.62%), Postives = 62/116 (53.45%), Query Frame = 3 
Query: 1869 AASTPCAVVHSSGQYLAWGHEWPCIAGGKVELSRDGKFLACLYEWDVSFVDVEEGVVTKRLRSEGSPGVSFALHPNGSEIVTASRSLLLRHWEIATGDCKRAIKAHDHIVRCMDYD 2216
            AA  P   +H    + +         GGKV +S+D +FL      D+  ++++ G    RL+ +      FA+ P+G  +V+ASRSLLL+ W++ TG   R++KAHD  +  MD D
Sbjct:    2 AAPPPQGKIHLKTSFKSTQTIESIYTGGKVCISQDEQFLITTVGEDIDVIEIKTGKKLWRLKGDTEIITMFAVTPDGHTLVSASRSLLLKTWDLRTGTLVRSLKAHDAPIIVMDID 117
[Close]
BLAST of Ec-00_001580.2 vs. uniprot
Match: A0A367KBH2_RHIAZ (U3 small nucleolar RNA-associated protein 13 n=1 Tax=Rhizopus azygosporus TaxID=86630 RepID=A0A367KBH2_RHIAZ)

HSP 1 Score: 69.7 bits (169), Expect = 3.580e-8
Identity = 35/91 (38.46%), Postives = 51/91 (56.04%), Query Frame = 3 
Query: 1947 GGKVELSRDGKFLACLYEWDVSFVDVEEGVVTKRLRSEGSPGVSFALHPNGSEIVTASRSLLLRHWEIATGDCKRAIKAHDHI-VRCMDYD 2216
            GGKVE+++D K+L      D+   ++  G    +L  +     + A+ PNG  +V+ASRSL +R WE+  G+C R  KAHD   V  MD D
Sbjct:   26 GGKVEITQDSKYLISTLSEDIIVTELATGKQVHQLEGDTELVTTMAVKPNGKHLVSASRSLFIRIWELEKGECVRTFKAHDSAPVIVMDID 116
[Close]
BLAST of Ec-00_001580.2 vs. uniprot
Match: A0A367K4Q1_RHIAZ (U3 small nucleolar RNA-associated protein 13 n=4 Tax=Rhizopus TaxID=4842 RepID=A0A367K4Q1_RHIAZ)

HSP 1 Score: 69.7 bits (169), Expect = 4.090e-8
Identity = 35/91 (38.46%), Postives = 51/91 (56.04%), Query Frame = 3 
Query: 1947 GGKVELSRDGKFLACLYEWDVSFVDVEEGVVTKRLRSEGSPGVSFALHPNGSEIVTASRSLLLRHWEIATGDCKRAIKAHDHI-VRCMDYD 2216
            GGKVE+++D K+L      D+   ++  G    +L  +     + A+ PNG  +V+ASRSL +R WE+  G+C R  KAHD   V  MD D
Sbjct:  248 GGKVEITQDSKYLISTLSEDIIVTELATGKQVHQLEGDTELVTTMAVKPNGKHLVSASRSLFIRIWELEKGECVRTFKAHDSAPVIVMDID 338
The following BLAST results are available for this feature:
BLAST of Ec-00_001580.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEB0_ECTSI1.110e-11691.07Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5K5S8_9PHAE9.780e-6190.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LEB1_ECTSI3.490e-4492.86Utp13 domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A836CIZ1_9STRA5.040e-1641.61Utp13 domain-containing protein n=1 Tax=Tribonema ... [more]
A0A8H7ZTD2_9FUNG8.430e-1245.56Quinon protein alcohol dehydrogenase-like superfam... [more]
A0A383VI50_TETOB7.560e-1041.67Utp13 domain-containing protein n=1 Tax=Tetradesmu... [more]
A0A7L3BAK2_9AVES4.120e-935.00TBL3 protein (Fragment) n=1 Tax=Syrrhaptes paradox... [more]
A0A197JMX3_9FUNG1.020e-833.62WD40 repeat-like protein n=1 Tax=Linnemannia elong... [more]
A0A367KBH2_RHIAZ3.580e-838.46U3 small nucleolar RNA-associated protein 13 n=1 T... [more]
A0A367K4Q1_RHIAZ4.090e-838.46U3 small nucleolar RNA-associated protein 13 n=4 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:1794827..1800240 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length4160
Hectar predicted targeting categoryother localisation
Gene idEc-00_001580.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_001580Ec-00_001580Ectocarpus species7 Ec32 male_plus_femaleSDRgenechr_00 1794827..1808611 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_001580.2Ec-00_001580.2Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidechr_00 1795010..1795834 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_001580.2.1Ec-00_001580.2.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1794827..1796774 +
Ec-00_001580.2.2Ec-00_001580.2.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1797562..1797689 +
Ec-00_001580.2.3Ec-00_001580.2.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonchr_00 1798157..1800240 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0015805UTR:Ec-00_001580.2Ectocarpus species7 Ec32 male_plus_femaleSDRfive_prime_UTRchr_00 1794827..1795009 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_001580.2CDS:Ec-00_001580.2Ectocarpus species7 Ec32 male_plus_femaleSDRCDSchr_00 1795010..1795834 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-00_0015803UTR:Ec-00_001580.2Ectocarpus species7 Ec32 male_plus_femaleSDRthree_prime_UTRchr_00 1795835..1796774 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-00_001580.2 ID=Ec-00_001580.2|Name=Ec-00_001580.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=275bp
MPSSLQLPSPTPACAVAFSPSVPMPPSLATAKRAPTAPAWWLVRGGLEGV
RRCSSNRRRCCSSCCSCRRTCRGPTHQVLPIPPPLTGVPGRSESTAAAAA
VCFASCSEPIGASLRDLSFPDEDPRRPCSGRRRRAESLLYAGRSDGDAAV
AESASLWWLLVASSSSGDGASVPSLLPLVQLLWCWILGLSCVSNCCCCAA
AATSNSEEGDDSPSPSPSPPPWCGSGGELLLLLLLLLTTLVLVVLRETSA
RDARRIERGLHQAKPLLFCFETSL*
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spliced messenger RNA

>Ec-00_001580.2 ID=Ec-00_001580.2|Name=Ec-00_001580.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=4160bp|location=Sequence derived from alignment at chr_00:1794827..1800240+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
CTTCTCGCCAGAAATTCCCCTTGGCCGGAGGTCAAGGCTCTCATCCGCTC
CGCCGCCACCTGGCCCCCCTCCTCCACGGGGAACGGCACCACGGAGGTGT
CGCAGTACCCGCACCCCCGATCCACCGCAAGGACATCGTAGACGACGCTG
GTGGTGCTAACCTCTGCCGCGGTCTCGTCGTCCATGCCCTCCTCCCTCCA
GCTGCCCTCTCCCACCCCCGCTTGCGCCGTAGCCTTCTCGCCGAGCGTAC
CCATGCCCCCCTCGCTAGCCACGGCGAAGCGGGCGCCCACGGCGCCGGCG
TGGTGGTTAGTCCGCGGCGGCTTGGAAGGCGTGCGCCGTTGCTCGTCCAA
CCGCCGCCGCTGCTGCTCGTCCTGCTGCTCCTGCCGACGAACCTGCAGAG
GGCCCACGCACCAGGTGCTGCCAATACCGCCACCCCTGACAGGAGTCCCA
GGGCGATCCGAATCCACTGCTGCTGCTGCTGCTGTGTGCTTTGCGAGTTG
CTCCGAGCCTATCGGGGCGAGCTTGAGGGACTTGAGCTTTCCGGACGAGG
ATCCGAGGAGGCCTTGCTCTGGTCGTCGCCGCCGGGCCGAGTCGTTGTTG
TACGCCGGCAGGAGCGACGGCGATGCAGCAGTAGCAGAGTCGGCGTCATT
GTGGTGGTTGTTGGTGGCATCGTCCTCGTCGGGGGACGGTGCCTCGGTGC
CGTCCCTGCTGCCTCTGGTCCAGTTGCTGTGGTGCTGGATCTTGGGCTTG
AGCTGTGTCTCGAACTGCTGCTGTTGTGCTGCCGCTGCTACGTCGAACAG
CGAGGAGGGAGACGACTCTCCCTCTCCCTCTCCCTCTCCGCCGCCTTGGT
GCGGTAGCGGCGGGGAACTGTTGCTGTTGCTGTTGCTGTTGCTGACGACG
CTGGTGTTGGTGGTGCTGAGGGAGACATCGGCAAGGGATGCTCGGAGGAT
AGAACGAGGTCTCCACCAGGCGAAGCCGTTGCTGTTTTGTTTTGAAACTT
CGCTATGACCCACGTCCTTCGGTTGATAGTCTTGACTGCTGCTGTGCTTT
TCCATGTCTACCTCACATGCCATGGCACGTCTGATCCGGGTATATCTCTC
CGCCGCTGGCGGGGTGTGGATCTCAGCCGTGCTGCACGCGTTGGTATCAA
ACAGGAGAGCTCTCTCTCTCTCTATGCTCCTCTGCGTAAGAAAAAGTCTC
AACTGTCACGCACGCACCAGCTGTAGTGTACCAGCACACCGCGGACGTTG
ACAATCGAATCCCCCCGAAGTACAAGATATCAACGTATCAACGTGCGGCG
GAAGGGTTCATGTACGCGACCATCCCACAGCTCGAAGGTGTCGCTGCAGT
AGTGCCAAAGCGCCGGGGGGGAGTGGGATCCTGCTGTTCTTGTCCAAAAG
TTGCGTGTTGCTGCACTGGGAATTTGACCTTTGAGAAGGGGGTCTGCGAA
TAAGAATAAGTTAACATACACAAGACTATTATCTGTGATGCCCCGCTTCA
CTGAGTTGCTGGGACTCGACAGCAGTGGGTGTACTCCGCAGTCGGCATCT
ATTGCCCACGAGCTGAGTAGATATGCTCAAGGTGGCTTCTACAACACGTG
GTCCTTCACTGAGTAAGGCGTGGGAAGTTTCCAAGGCGCACAAGGGAGCT
TTCAGGTAAGCAATCATATCGTGTGTTTTTCAAACGTATCCGCGGCCGCC
TCGTACGGATGTACCGCCAGCAGTAGCAGCACAAGCCTGCGAGAGAGACC
AGAGCACCAAAACCGTCGTGTACCGGCCAGTTGCACGTACAAACACTGGG
TTATCCACAACGGTACTTTCTATGCTACCGGAGACTTCTTTCCCTAGCAT
TCGCGCAGCTTCCACGCCGCGCAGCTTCCACGCCATGCGCCGTGGTCCAC
AGCAGCGGCCAGTACCTTGCTTGGGGACATGAGTGGCCGTGCATCGCACG
GAGGAAAGGTCGAGCTCAGCAGGGATGGCAAGTTCCTGGCCTGCCTGTAC
GAGTGGGACGTGTCCTTCGTCGACGTGGAGGAGGGGGTTGTGACCAAGCG
CCTCAGAAGCGAGGGGAGCCCCGGAGGTATCCTTTGCTCTGCACCCGAAC
GGGTCGGAGATCGTGACCGCCAGCCGAAGTCTCCTACTCCGGCATTGGGA
GATCGCTACAGGGGACTGCAAGCGGGCCATCAAGGCCCACGATCACATCG
TCCGATGCATGGACTACGATGGGTGGGTCTCATGCTTCGCGTGCGCACTG
CTGTCCCGTGGCCGTGTAACGCACCTCTAGATTATGAGAACCCGTTGCGA
TCCACGTATCCTGCGGCGATCAAGCTTGTCGGCCTTTTGACGACGAGGAA
TCATGGTCTCTAGAGGGTGGTTTGTACAGGGACAAACATTGTCATTTCTG
TGTGCCTGGGTGTCTTCCATGTACGAAAGTCCGACAAAGGACGAGCGTTG
AGAGCGCACCAACACCACCAAGAAGCAGGAGTGAAAACAGCGATCTGTGA
GCGGCTTGCCTGCGGCTGCTATTATGCGTTTTTTATTTTTTCTCGTGGTA
ATTTTCAAAGGCGGCAAATAATCGTGTTTGTCGTCGATGTTTCAAGGCTC
TACCCCGCTCTCGCCGATGATCGATTCCTTCGGGCCTACCCACCCCACGC
GCTCTCTCGCGCCCTCGCCGGTGGTGGCTCGTTCTGAGCCGCCGTCGGAG
AAGTCACGAGAGAGTGGGGCAGTCTAAGCGCGGCGGCTACCTGCGGTTTT
CGCGGGTGGCTGCCGTTCGTGCGGGCGTCGGGGACTCTTGAAGGATGACA
AAAAAGCGTCTGTACACATCGTGATGACCATCTAGATCCATTCTTTGAGG
CGCATGAGCACGAGAGAGCTTTTCGTGAAAGGGTAATTTTCTGCTGTGTA
CAATAAGGTGCTTGGATAATGGCTTCGTTTTGTGTCGTCTGGCCTGTTTA
CCTCTTTTTCTTGGATATTCCGATCCCGCGTCCTTAGCTGCTGTTTCGAG
AAGGACTTGTTTTAGTCTCCGTTGTTGTTTAGACTCTCTGGACGCAGAAT
GGATTGTTGCCTCCGAACCACAACACCCAGTATTTCCTTGGCCGCTTTTA
CTCTGCTCTCGCCGATGATCGATTTCTTCGGGCCTACCCACCCCACATGC
TCTCTCGCGCCCTCGCCGGTGGTGGCTCGTTCTGAGCCACCGTTGGAGAA
GTCACGAAAGAGCGGGGCAGTCTAAGCGCGGCGGCTACCTGCGGTTTTCG
CGGGTGGCTGCCACTGTGCGGGCGTCGGGGATGCTTGAAGGATGACAAAA
AAGCGTCTGCACACACCGTGATGACCATCTAGATCCATTCTTTGAGGCGC
ATGAGCACGAGAGCGTTGAACCATCCTTCTTCCAAAACCACGAATCTCGT
ATCCTGTTTTTTTTTTTTGTGTGCCCTTCAAGGTTGATGCTGGGGGCACC
GCCGTGTAGTAGTTTTTTTTTGTTTGCCTCTGCCTGCCACCATTGGAGAG
GCAAGGCCGGTGTTCTCAACCACCTCTGGGTTGTTGCTTTTTCATTAGTT
GCCGGTGTTCAAGCAGTCTAGAAGCGTTAGCAATCCCAAGCTCGCCGATG
ATGGATTCCTTCGGGCCTACCCACCCCACATGCTCTCTCGCGCCCTCGCC
GGTGGTGGCTCGTTCTGAGCCGCCGTCGGAGAAGTCACGAGAGAGCGGGG
CAGTCTGAGCGTGGCGGCTGCCTGCGGTTTTCGCGGGTGGCTGCCGTTCG
TCCGGGCGTCTGGGACTCTTGAAGGATGACAAAAAAGCGTCTGTACACAT
CGTGATGACCATCTAGATCCATTCTTTGAGGCGCATGAGCAAGAGAGCGT
TGACATATCCCTCCCCCGGAACCATGAATATGACCATCTCGTATCCTGTT
GTCGGCGTCCGTTCAAGACTCGATGCTAGGGGCACCACCGTCTAACGGTT
TTTGATTTGCCTGTCTGCCACGATGGGAGAGGCGAGGATTTGCAGTGCTT
AACAAGGCGTATGTTCTCAACCATTCTGTTTTGTTGTTTTTTATCATGAG
TTTTTTCGGCAGCATTCTCAAAAATAATCACAAGCTTTAGATGATACTCA
CAAGCTCGCCGATGATGGATTCCTTCGGGCCTACCCACCCCACATGCTCT
CTCTCGCCCC
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protein sequence of Ec-00_001580.2

>Ec-00_001580.2 ID=Ec-00_001580.2|Name=Ec-00_001580.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=275bp
MPSSLQLPSPTPACAVAFSPSVPMPPSLATAKRAPTAPAWWLVRGGLEGV
RRCSSNRRRCCSSCCSCRRTCRGPTHQVLPIPPPLTGVPGRSESTAAAAA
VCFASCSEPIGASLRDLSFPDEDPRRPCSGRRRRAESLLYAGRSDGDAAV
AESASLWWLLVASSSSGDGASVPSLLPLVQLLWCWILGLSCVSNCCCCAA
AATSNSEEGDDSPSPSPSPPPWCGSGGELLLLLLLLLTTLVLVVLRETSA
RDARRIERGLHQAKPLLFCFETSL*
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mRNA from alignment at chr_00:1794827..1800240+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-00_001580.2 ID=Ec-00_001580.2|Name=Ec-00_001580.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=5414bp|location=Sequence derived from alignment at chr_00:1794827..1800240+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
CTTCTCGCCAGAAATTCCCCTTGGCCGGAGGTCAAGGCTCTCATCCGCTC
CGCCGCCACCTGGCCCCCCTCCTCCACGGGGAACGGCACCACGGAGGTGT
CGCAGTACCCGCACCCCCGATCCACCGCAAGGACATCGTAGACGACGCTG
GTGGTGCTAACCTCTGCCGCGGTCTCGTCGTCCATGCCCTCCTCCCTCCA
GCTGCCCTCTCCCACCCCCGCTTGCGCCGTAGCCTTCTCGCCGAGCGTAC
CCATGCCCCCCTCGCTAGCCACGGCGAAGCGGGCGCCCACGGCGCCGGCG
TGGTGGTTAGTCCGCGGCGGCTTGGAAGGCGTGCGCCGTTGCTCGTCCAA
CCGCCGCCGCTGCTGCTCGTCCTGCTGCTCCTGCCGACGAACCTGCAGAG
GGCCCACGCACCAGGTGCTGCCAATACCGCCACCCCTGACAGGAGTCCCA
GGGCGATCCGAATCCACTGCTGCTGCTGCTGCTGTGTGCTTTGCGAGTTG
CTCCGAGCCTATCGGGGCGAGCTTGAGGGACTTGAGCTTTCCGGACGAGG
ATCCGAGGAGGCCTTGCTCTGGTCGTCGCCGCCGGGCCGAGTCGTTGTTG
TACGCCGGCAGGAGCGACGGCGATGCAGCAGTAGCAGAGTCGGCGTCATT
GTGGTGGTTGTTGGTGGCATCGTCCTCGTCGGGGGACGGTGCCTCGGTGC
CGTCCCTGCTGCCTCTGGTCCAGTTGCTGTGGTGCTGGATCTTGGGCTTG
AGCTGTGTCTCGAACTGCTGCTGTTGTGCTGCCGCTGCTACGTCGAACAG
CGAGGAGGGAGACGACTCTCCCTCTCCCTCTCCCTCTCCGCCGCCTTGGT
GCGGTAGCGGCGGGGAACTGTTGCTGTTGCTGTTGCTGTTGCTGACGACG
CTGGTGTTGGTGGTGCTGAGGGAGACATCGGCAAGGGATGCTCGGAGGAT
AGAACGAGGTCTCCACCAGGCGAAGCCGTTGCTGTTTTGTTTTGAAACTT
CGCTATGACCCACGTCCTTCGGTTGATAGTCTTGACTGCTGCTGTGCTTT
TCCATGTCTACCTCACATGCCATGGCACGTCTGATCCGGGTATATCTCTC
CGCCGCTGGCGGGGTGTGGATCTCAGCCGTGCTGCACGCGTTGGTATCAA
ACAGGAGAGCTCTCTCTCTCTCTATGCTCCTCTGCGTAAGAAAAAGTCTC
AACTGTCACGCACGCACCAGCTGTAGTGTACCAGCACACCGCGGACGTTG
ACAATCGAATCCCCCCGAAGTACAAGATATCAACGTATCAACGTGCGGCG
GAAGGGTTCATGTACGCGACCATCCCACAGCTCGAAGGTGTCGCTGCAGT
AGTGCCAAAGCGCCGGGGGGGAGTGGGATCCTGCTGTTCTTGTCCAAAAG
TTGCGTGTTGCTGCACTGGGAATTTGACCTTTGAGAAGGGGGTCTGCGAA
TAAGAATAAGTTAACATACACAAGACTATTATCTGTGATGCCCCGCTTCA
CTGAGTTGCTGGGACTCGACAGCAGTGGGTGTACTCCGCAGTCGGCATCT
ATTGCCCACGAGCTGAGTAGATATGCTCAAGGTGGCTTCTACAACACGTG
GTCCTTCACTGAGTAAGGCGTGGGAAGTTTCCAAGGCGCACAAGGGAGCT
TTCAGGTAAGCAATCATATCGTGTGTTTTTCAAACGTATCCGCGGCCGCC
TCGTACGGATGTACCGCCAGCAGTAGCAGCACAAGCCTGCGAGAGAGACC
AGAGCACCAAAACCGTCGTGTACCGGCCAGTTGCACGTACAAACACTGGG
TTATCCACAACGGTACTTTCTATGCTACCGGAGACTTCTTTCCCTAGCAT
TCGCGCAGCTTCCACGCCGCGCAGCTTCCACGCCATGCGCCGTGGTCCAC
AGCAGCGGCCAGTACCTTGCTTGGGGACATGAGTGGCCGTGCATCGCAGT
GAGTGATAGGAGATGTCTTGTGTGTCGGCCGATTCGTTCACGCCCACCTT
CGCGGCGGTGTTCACGTGTTCAATGGACAGTAAAACGGCAGGTTTCTGCT
GCACTTTCTGTCAGCCGCGTGTCGAGTAAAAACATCCACTAAATACCACC
AACAGGGGCAGTCATTATCCTGCGATCATGTTGTGTGGCGATGTGTAAAT
GACATGAACCCGTTACCCGAGACATTCGTAGCATATCACGCCCAGCATCT
ACCCGTTTGCGCTCGCGTGAATGCCGTTTCTGCAGACGCCTCTCGCCACC
ACGTATAACTTGTCCTGTAGGGTTTTATGCAGTCGCGCTTCCGACAGGGT
GGCGCCCTCTCCGTTCTTAACCACGGTACATGGCTGATACAGCAGTAGTA
TCGCGCAGCAGTAAGTACCGATGAGCGCCCCCCTTGAATCAGCCGCCAAT
GGTGAAGGTGCAGCAATCATCACCACGCGGGCACGGCATGATGTACTCAC
TGGTGCTCCTGGCTTGGGCGCCGACTCTTGAAACCCAGCATCGCGCACCA
GCTACAGGCCGGTTCACCCATCACTAATATTAAGTATGTCGTATCGACTT
CGGGAGGGCACGGCAGTATCACGAGCGACGACAAGCCCTGCTCTTCGGAT
GTAAATGACGAGTCGTGCCACCTCCCCACCCCGCACCCATAACTGGCCGT
GAATATCGTGGGCAACCTCTCTTACACCCGCTCTATTTGTTTCTCTGCCT
GCTCTGTCTGCTCTTGCATCGACCAACCTGCTCAGCGGAGGAAAGGTCGA
GCTCAGCAGGGATGGCAAGTTCCTGGCCTGCCTGTACGAGTGGGACGTGT
CCTTCGTCGACGTGGAGGAGGGGGTTGTGACCAAGCGCCTCAGAAGCGAG
GGGAGCCCCGGAGGCGAGGAAGAAATTGTGCGTCACTTGAAAGCAGAAAC
AACAGTGCTGTAGTTGGGGGAACGTAAGGTCTCCACAAAGTCGGGATCGT
CAGTCTTGCATGTTTTGGGCTACACGCCTCCTCGGTGCTGGTTGAGGGGT
TCGTGTGTTGCCCGCGGCATGTGTGCTTTTCTTCCCGCATCGGAGGTTTC
ATGGTCTGGCCAGGCACGCAGATGCTTTCTCGCCACTCTGTGTCACCTAA
ATGAATCGAAGCCGTTTCGTAGAAAAAGGGGTGCTTGTAGCGAGTTGTCT
GTTTATGCCCGCAGCAGCGTTCACGACGATGTTGCATGAATGCATCCTAA
CTGCCATTTGCACTATGATACTGTTCTTCGGTTCCGCAACAGTCACCTGT
CGTACAGCCTACATAGATATGCGCGCAAAGTGCCCTTTTTTATTCTTGTT
CGGTTCTTCAACTTCGAATACATTTGGTAGGTATCCTTTGCTCTGCACCC
GAACGGGTCGGAGATCGTGACCGCCAGCCGAAGTCTCCTACTCCGGCATT
GGGAGATCGCTACAGGGGACTGCAAGCGGGCCATCAAGGCCCACGATCAC
ATCGTCCGATGCATGGACTACGATGGGTGGGTCTCATGCTTCGCGTGCGC
ACTGCTGTCCCGTGGCCGTGTAACGCACCTCTAGATTATGAGAACCCGTT
GCGATCCACGTATCCTGCGGCGATCAAGCTTGTCGGCCTTTTGACGACGA
GGAATCATGGTCTCTAGAGGGTGGTTTGTACAGGGACAAACATTGTCATT
TCTGTGTGCCTGGGTGTCTTCCATGTACGAAAGTCCGACAAAGGACGAGC
GTTGAGAGCGCACCAACACCACCAAGAAGCAGGAGTGAAAACAGCGATCT
GTGAGCGGCTTGCCTGCGGCTGCTATTATGCGTTTTTTATTTTTTCTCGT
GGTAATTTTCAAAGGCGGCAAATAATCGTGTTTGTCGTCGATGTTTCAAG
GCTCTACCCCGCTCTCGCCGATGATCGATTCCTTCGGGCCTACCCACCCC
ACGCGCTCTCTCGCGCCCTCGCCGGTGGTGGCTCGTTCTGAGCCGCCGTC
GGAGAAGTCACGAGAGAGTGGGGCAGTCTAAGCGCGGCGGCTACCTGCGG
TTTTCGCGGGTGGCTGCCGTTCGTGCGGGCGTCGGGGACTCTTGAAGGAT
GACAAAAAAGCGTCTGTACACATCGTGATGACCATCTAGATCCATTCTTT
GAGGCGCATGAGCACGAGAGAGCTTTTCGTGAAAGGGTAATTTTCTGCTG
TGTACAATAAGGTGCTTGGATAATGGCTTCGTTTTGTGTCGTCTGGCCTG
TTTACCTCTTTTTCTTGGATATTCCGATCCCGCGTCCTTAGCTGCTGTTT
CGAGAAGGACTTGTTTTAGTCTCCGTTGTTGTTTAGACTCTCTGGACGCA
GAATGGATTGTTGCCTCCGAACCACAACACCCAGTATTTCCTTGGCCGCT
TTTACTCTGCTCTCGCCGATGATCGATTTCTTCGGGCCTACCCACCCCAC
ATGCTCTCTCGCGCCCTCGCCGGTGGTGGCTCGTTCTGAGCCACCGTTGG
AGAAGTCACGAAAGAGCGGGGCAGTCTAAGCGCGGCGGCTACCTGCGGTT
TTCGCGGGTGGCTGCCACTGTGCGGGCGTCGGGGATGCTTGAAGGATGAC
AAAAAAGCGTCTGCACACACCGTGATGACCATCTAGATCCATTCTTTGAG
GCGCATGAGCACGAGAGCGTTGAACCATCCTTCTTCCAAAACCACGAATC
TCGTATCCTGTTTTTTTTTTTTGTGTGCCCTTCAAGGTTGATGCTGGGGG
CACCGCCGTGTAGTAGTTTTTTTTTGTTTGCCTCTGCCTGCCACCATTGG
AGAGGCAAGGCCGGTGTTCTCAACCACCTCTGGGTTGTTGCTTTTTCATT
AGTTGCCGGTGTTCAAGCAGTCTAGAAGCGTTAGCAATCCCAAGCTCGCC
GATGATGGATTCCTTCGGGCCTACCCACCCCACATGCTCTCTCGCGCCCT
CGCCGGTGGTGGCTCGTTCTGAGCCGCCGTCGGAGAAGTCACGAGAGAGC
GGGGCAGTCTGAGCGTGGCGGCTGCCTGCGGTTTTCGCGGGTGGCTGCCG
TTCGTCCGGGCGTCTGGGACTCTTGAAGGATGACAAAAAAGCGTCTGTAC
ACATCGTGATGACCATCTAGATCCATTCTTTGAGGCGCATGAGCAAGAGA
GCGTTGACATATCCCTCCCCCGGAACCATGAATATGACCATCTCGTATCC
TGTTGTCGGCGTCCGTTCAAGACTCGATGCTAGGGGCACCACCGTCTAAC
GGTTTTTGATTTGCCTGTCTGCCACGATGGGAGAGGCGAGGATTTGCAGT
GCTTAACAAGGCGTATGTTCTCAACCATTCTGTTTTGTTGTTTTTTATCA
TGAGTTTTTTCGGCAGCATTCTCAAAAATAATCACAAGCTTTAGATGATA
CTCACAAGCTCGCCGATGATGGATTCCTTCGGGCCTACCCACCCCACATG
CTCTCTCTCGCCCC
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Coding sequence (CDS) from alignment at chr_00:1794827..1800240+

>Ec-00_001580.2 ID=Ec-00_001580.2|Name=Ec-00_001580.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=825bp|location=Sequence derived from alignment at chr_00:1794827..1800240+ (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCCCTCCTCCCTCCAGCTGCCCTCTCCCACCCCCGCTTGCGCCGTAGC
CTTCTCGCCGAGCGTACCCATGCCCCCCTCGCTAGCCACGGCGAAGCGGG
CGCCCACGGCGCCGGCGTGGTGGTTAGTCCGCGGCGGCTTGGAAGGCGTG
CGCCGTTGCTCGTCCAACCGCCGCCGCTGCTGCTCGTCCTGCTGCTCCTG
CCGACGAACCTGCAGAGGGCCCACGCACCAGGTGCTGCCAATACCGCCAC
CCCTGACAGGAGTCCCAGGGCGATCCGAATCCACTGCTGCTGCTGCTGCT
GTGTGCTTTGCGAGTTGCTCCGAGCCTATCGGGGCGAGCTTGAGGGACTT
GAGCTTTCCGGACGAGGATCCGAGGAGGCCTTGCTCTGGTCGTCGCCGCC
GGGCCGAGTCGTTGTTGTACGCCGGCAGGAGCGACGGCGATGCAGCAGTA
GCAGAGTCGGCGTCATTGTGGTGGTTGTTGGTGGCATCGTCCTCGTCGGG
GGACGGTGCCTCGGTGCCGTCCCTGCTGCCTCTGGTCCAGTTGCTGTGGT
GCTGGATCTTGGGCTTGAGCTGTGTCTCGAACTGCTGCTGTTGTGCTGCC
GCTGCTACGTCGAACAGCGAGGAGGGAGACGACTCTCCCTCTCCCTCTCC
CTCTCCGCCGCCTTGGTGCGGTAGCGGCGGGGAACTGTTGCTGTTGCTGT
TGCTGTTGCTGACGACGCTGGTGTTGGTGGTGCTGAGGGAGACATCGGCA
AGGGATGCTCGGAGGATAGAACGAGGTCTCCACCAGGCGAAGCCGTTGCT
GTTTTGTTTTGAAACTTCGCTATGA
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Synonyms
The feature 'Ec-00_001580.2' has the following synonyms
Synonym
Esi0013_0118
Esi_0013_0118