Ec-28_003570.3 (polypeptide) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameEc-28_003570.3
Unique NameEc-28_003570.3
Typepolypeptide
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length294
Homology
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BLAST of Ec-28_003570.3 vs. uniprot
Match: A0A6H5JSJ2_9PHAE (CobW C-terminal domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSJ2_9PHAE)

HSP 1 Score: 457 bits (1176), Expect = 1.180e-155
Identity = 248/293 (84.64%), Postives = 257/293 (87.71%), Query Frame = 0 
Query:    1 MPAGVVRVKGVLAFDEDRLTRSVFNMSGRRRLSFETDGVWQGPMSLHLVVIGVGMDRAGVLSALEGLRVDTSSGAGSERHCDGRGSAELEKETERMTRILEDDPLFDPVPREATPSCAQHVVRFRFTGAGAYGIPPSQLCIKFGVNLDAVNRSILRAVNSGATPGSSTSPTTRASSDTVVAKSAGGSXXDVVVLPAEGARDPDNAVSGPSATTGKNLRIFLTCQEGVHVGGXXXXXXXXXXQCLVLRYAVGTSSGGSTSVGVSLADAWPTLVETARGVMKTELGHIHFCNCFS 293
            MPAGVVRVKGVLAFDEDRLTRSVFNMSGRRRLSFETDG+WQGPMSL+LVVIGVGMDR GVLSALEGLRVDTSSGAGSER+C G GSAELEKETER+ RILE+DPLFD V  EATPSCA+HVVRFRFTGAGAYG+PP+QLCIKFGVNLDAVNRSILRAVNSGATPG S   TTRASSD              VVLP EGARDPDN VSG SATTGKNLR FLTCQEGVHVGGXXXXXXX    CLVLRYAVGTSS  S+SVGVSLADAWP LVETARGVMKTELGHIHFCNCFS
Sbjct:  350 MPAGVVRVKGVLAFDEDRLTRSVFNMSGRRRLSFETDGMWQGPMSLYLVVIGVGMDRVGVLSALEGLRVDTSSGAGSERNCVGGGSAELEKETERLMRILEEDPLFDSVSCEATPSCAKHVVRFRFTGAGAYGVPPTQLCIKFGVNLDAVNRSILRAVNSGATPGRSAGATTRASSD-------------AVVLPVEGARDPDNTVSGSSATTGKNLRTFLTCQEGVHVGGXXXXXXXQ--HCLVLRYAVGTSSSDSSSVGVSLADAWPMLVETARGVMKTELGHIHFCNCFS 627
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BLAST of Ec-28_003570.3 vs. uniprot
Match: D8LTM2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTM2_ECTSI)

HSP 1 Score: 340 bits (871), Expect = 1.010e-111
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0 
Query:    1 MPAGVVRVKGVLAFDEDRLTRSVFNMSGRRRLSFETDGVWQGPMSLHLVVIGVGMDRAGVLSALEGLRVDTSSGAGSERHCDGRGSAELEKETERMTRILEDDPLFDPVPREATPSCAQHVVRFRFTGAGAYGIPPSQLCIKFGVNLDAVNRSILRAVNSGATPGSSTSPTTR 173
            MPAGVVRVKGVLAFDEDRLTRSVFNMSGRRRLSFETDGVWQGPMSLHLVVIGVGMDRAGVLSALEGLRVDTSSGAGSERHCDGRGSAELEKETERMTRILEDDPLFDPVPREATPSCAQHVVRFRFTGAGAYGIPPSQLCIKFGVNLDAVNRSILRAVNSGATPGSSTSPTTR
Sbjct:  293 MPAGVVRVKGVLAFDEDRLTRSVFNMSGRRRLSFETDGVWQGPMSLHLVVIGVGMDRAGVLSALEGLRVDTSSGAGSERHCDGRGSAELEKETERMTRILEDDPLFDPVPREATPSCAQHVVRFRFTGAGAYGIPPSQLCIKFGVNLDAVNRSILRAVNSGATPGSSTSPTTR 465
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BLAST of Ec-28_003570.3 vs. uniprot
Match: C1DY15_MICCC (CobW C-terminal domain-containing protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1DY15_MICCC)

HSP 1 Score: 57.0 bits (136), Expect = 1.810e-5
Identity = 54/179 (30.17%), Postives = 81/179 (45.25%), Query Frame = 0 
Query:    1 MPAGVVRVKGVLAFDEDRLTRSVFNMSGRRRLSFETDGVWQGP---------------MSLHLVVIGVGMDRAGVLSALEGLRVDTSSGAGSERHCDGRGSAELEKETERMTRILEDD---PLFDPVPREATPSCAQHVVRFRFTGAGAYGIPPSQLCIKFGVNLDAVNRSILRAVNSG 161
            +P GVVR KG + F E+   +  F++SGRRR+  E     +GP                +  L++IG  +DR   L+ L  L          +      G+ EL     R+  +   D   PL       A  +CA     FR TGA A G+   ++    GV+++AVNR ++RA+NSG
Sbjct:  407 IPPGVVRAKGFVTFAEEPGVQYDFHLSGRRRVEIEPSEN-RGPPGFESAFSKTPAKTRSATRLILIGPDIDRDVALAQLGDLESPPPRSGDLDVAAALAGARELVGSDLRLEWVEAGDWCHPL-------AAATCAH----FRLTGAAANGLTVDEMERNHGVDMNAVNRDLVRALNSG 573
The following BLAST results are available for this feature:
BLAST of Ec-28_003570.3 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JSJ2_9PHAE1.180e-15584.64CobW C-terminal domain-containing protein n=1 Tax=... [more]
D8LTM2_ECTSI1.010e-111100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
C1DY15_MICCC1.810e-530.17CobW C-terminal domain-containing protein n=1 Tax=... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011629Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminalPFAMPF07683CobW_Ccoord: 2..66
e-value: 2.1E-7
score: 30.8
NoneNo IPR availableSUPERFAMILY90002Hypothetical protein YjiA, C-terminal domaincoord: 3..67

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_28contigchr_28:3376367..3378464 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-28_003570.3Ec-28_003570.3Ectocarpus species7 Ec32 male_plus_femaleSDRmRNAchr_28 3369864..3379243 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ec-28_003570.3 ID=Ec-28_003570.3|Name=Ec-28_003570.3|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=294bp
MPAGVVRVKGVLAFDEDRLTRSVFNMSGRRRLSFETDGVWQGPMSLHLVV
IGVGMDRAGVLSALEGLRVDTSSGAGSERHCDGRGSAELEKETERMTRIL
EDDPLFDPVPREATPSCAQHVVRFRFTGAGAYGIPPSQLCIKFGVNLDAV
NRSILRAVNSGATPGSSTSPTTRASSDTVVAKSAGGSSSDVVVLPAEGAR
DPDNAVSGPSATTGKNLRIFLTCQEGVHVGGGGGGGGGDDQQCLVLRYAV
GTSSGGSTSVGVSLADAWPTLVETARGVMKTELGHIHFCNCFS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011629Cbl_biosynth_CobW-like_C