Ec-28_003120.1 (polypeptide) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Ec-28_003120.1
Unique Name	Ec-28_003120.1
Type	polypeptide
Organism	Ectocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length	240

Homology

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BLAST of Ec-28_003120.1 vs. uniprot
Match: D8LTR4_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTR4_ECTSI)

HSP 1 Score: 474 bits (1221), Expect = 3.320e-169
Identity = 239/239 (100.00%), Postives = 239/239 (100.00%), Query Frame = 0

Query:    1 MKTSCAVALASVATASGFMVPVATPTRSRTSLASGSAQFDEILQAPEAEEPPPPIELTGPQYVKTLAGASAPFPYFDPLEISSKFRAIDVKKFRESEIKHARVAMLAFLGMFVQELAHPLFENGGKDIGPAIVHFQAVTNYFPLMPALLLIIVGIFEGNNIYVGWVKQPLKLGVADLKPDYEPGSFGFDPLGLYPKDEAGKKAMMTKELNNGRLAMIATIGVWAQELVDGKTILGHLSG 239
            MKTSCAVALASVATASGFMVPVATPTRSRTSLASGSAQFDEILQAPEAEEPPPPIELTGPQYVKTLAGASAPFPYFDPLEISSKFRAIDVKKFRESEIKHARVAMLAFLGMFVQELAHPLFENGGKDIGPAIVHFQAVTNYFPLMPALLLIIVGIFEGNNIYVGWVKQPLKLGVADLKPDYEPGSFGFDPLGLYPKDEAGKKAMMTKELNNGRLAMIATIGVWAQELVDGKTILGHLSG
Sbjct:    1 MKTSCAVALASVATASGFMVPVATPTRSRTSLASGSAQFDEILQAPEAEEPPPPIELTGPQYVKTLAGASAPFPYFDPLEISSKFRAIDVKKFRESEIKHARVAMLAFLGMFVQELAHPLFENGGKDIGPAIVHFQAVTNYFPLMPALLLIIVGIFEGNNIYVGWVKQPLKLGVADLKPDYEPGSFGFDPLGLYPKDEAGKKAMMTKELNNGRLAMIATIGVWAQELVDGKTILGHLSG 239

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BLAST of Ec-28_003120.1 vs. uniprot
Match: A0A835Z091_9STRA (Fucoxanthin chlorophyll a/c binding protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z091_9STRA)

HSP 1 Score: 194 bits (493), Expect = 9.250e-59
Identity = 98/179 (54.75%), Postives = 120/179 (67.04%), Query Frame = 0

Query:   62 YVKTLAGASAPFPYFDPLEISSKFRAIDVKKFRESEIKHARVAMLAFLGMFVQELAHPLFENGGKDIGPAIVHFQAVTNYFPLMPALLLIIVGIFEGNNIYVGWVKQPLKLG--VADLKPDYEPGSFGFDPLGLYPKDEAGKKAMMTKELNNGRLAMIATIGVWAQELVDGKTILGHLS 238
            + + +AGA+APF +FDP+  SS      VKKFRE+E+KH RVAMLAFLG+ +QE  HP FE G  D+GPA  H Q V + FPL+   L   +G+ E   I  GW K+  +    VA+L  +Y PG   FDPL L PKD AG K M TKELNNGRLAMIAT+G+W QELVDG+TI GH S
Sbjct:   42 FKEEMAGATAPFGFFDPVGFSSDADDKKVKKFREAEVKHGRVAMLAFLGLLIQENFHPFFEQGEADLGPASFHLQQVDDKFPLLSLTLFFGIGLVESFTIGRGWSKRDFEDNGFVANLNEEYLPGDLKFDPLNLKPKDAAGLKEMQTKELNNGRLAMIATLGIWGQELVDGQTIAGHFS 220

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BLAST of Ec-28_003120.1 vs. uniprot
Match: A0A835ZAU2_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAU2_9STRA)

HSP 1 Score: 189 bits (481), Expect = 1.500e-56
Identity = 116/244 (47.54%), Postives = 152/244 (62.30%), Query Frame = 0

Query:    1 MKTSCAVALASVATASGFMVPVATPTRSRTSLASGSAQFDEILQAPEAEEPPPPIELTGPQY-VKTLAGASAPFPYFDPLEISSKFRAIDVKKFRESEIKHARVAMLAFLGMFVQELA-HPLFENGGKDIGPAIVHFQAVTNYFPLMPALLLIIVGIFEGNNIYVGWVKQPLK---LG---VADLKPDYEPGSFGFDPLGLYPKDEAGKKAMMTKELNNGRLAMIATIGVWAQELVDGKTILGH 236
            MK SC VA A++  AS F VP A  T +  S AS SA    +  A + +E          QY ++ ++GA+AP P++DPL  +++    +++K+RE+E+KH RVAMLA LGM VQE   HP F   G D+GPA  H Q V   +P +P LLL+ VG  E   I  GW KQ  K   LG   VA+LK DY PG  GFDPLGLYP+ E G++++  KE+NNGRLAMIA  G+WAQELVDG ++  H
Sbjct:    1 MKASCIVAAATIGAASAF-VP-AGQTCTGVSRASSSA----MKMAMDPDE----------QYSLQNMSGATAPVPFWDPLGFAAQVDGQELQKYREAELKHGRVAMLACLGMIVQEAGFHPFFGTAGADLGPAAFHLQKVGVNYPTLPLLLLVGVGAVESFTINKGWSKQDYKSSGLGEGFVANLKEDYFPGDLGFDPLGLYPQSEEGRRSIRNKEINNGRLAMIAIWGMWAQELVDGMSLYEH 228

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BLAST of Ec-28_003120.1 vs. uniprot
Match: A0A836CA40_9STRA (Light harvesting complex protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA40_9STRA)

HSP 1 Score: 177 bits (450), Expect = 7.220e-52
Identity = 92/182 (50.55%), Postives = 118/182 (64.84%), Query Frame = 0

Query:   63 VKTLAGASAPFPYFDPLEISSKFRAIDVKKFRESEIKHARVAMLAFLGMFVQELAHPLFENGGKDIGPAIVHFQAVTNYFPLMPALLLIIVGIFEGNNIYVGWVKQPLK---LG---VADLKPDYEPGSFGFDPLGLYPKDEAGKKAMMTKELNNGRLAMIATIGVWAQELVDGKTILGHLS 238
            ++ ++GA++P PY+DPL  +SK    +++K+RE+E+KH RVAMLA LGM VQE  HP F   G+DIGPA  H Q     F  +P  L++ VG+ E   I  GW KQ  K   LG   VA+LK DY PG  GFDPLGLYP +   +  +  KELNNGRLAMIA  G+WAQELVD  T+  H +
Sbjct:   47 LENMSGATSPVPYWDPLGFASKVDDQELQKYREAELKHGRVAMLAALGMIVQENFHPFFNTAGRDIGPAAFHLQKTMEEFSFLPFALVLGVGLVELTTINKGWSKQDYKETGLGAGFVANLKEDYFPGDLGFDPLGLYPTNPRERTNIRNKELNNGRLAMIAIWGMWAQELVDHLTLAEHFA 228

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BLAST of Ec-28_003120.1 vs. uniprot
Match: A0A835YMD9_9STRA (Fucoxanthin chlorophyll a/c protein, LI818 clade n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMD9_9STRA)

HSP 1 Score: 169 bits (427), Expect = 1.230e-48
Identity = 89/180 (49.44%), Postives = 113/180 (62.78%), Query Frame = 0

Query:   63 VKTLAGASAPFPYFDPLEISSKFRAIDVKKFRESEIKHARVAMLAFLGMFVQELAHPLFENGGKDIGPAIVHFQAVTNYFPLMPALLLIIVGIFEGNNIYVGWVKQPLK---LG---VADLKPDYEPGSFGFDPLGLYPKDEAGKKAMMTKELNNGRLAMIATIGVWAQELVDGKTILGH 236
            ++ ++GA+AP PY+DP  +++K    +++K+RE+E+KH RVAMLA LGM VQE  HP F   G+DIGPA  H Q     F  +P  L+  VG  E   I  GW +   K   LG   VA+LK DY PG  GFDPLGLYP     +  +  KELNNGRLAMIA  G+WAQELVDG  +  H
Sbjct:   45 LEEMSGATAPVPYWDPAGLAAKVDDQELQKYREAELKHGRVAMLATLGMVVQENFHPFFGTAGRDIGPAAFHLQETMKEFDALPLALVCGVGAVEFLTIDKGWSRSDYKETGLGAGFVANLKEDYFPGDLGFDPLGLYPSSPEERTNIRNKELNNGRLAMIAIWGMWAQELVDGLPLAEH 224

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BLAST of Ec-28_003120.1 vs. uniprot
Match: A0A836CGF9_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGF9_9STRA)

HSP 1 Score: 167 bits (423), Expect = 2.570e-48
Identity = 86/168 (51.19%), Postives = 113/168 (67.26%), Query Frame = 0

Query:   74 PYFDPLEISSKFRAIDVKKFRESEIKHARVAMLAFLGMFVQELAHPLFENGGKDIGPAIVHFQAVTNYFPLMPALLLIIVGIFEGNNIYVGWVKQ-PLKLGVADLKPDYEPGSFGFDPLGLYPKDEAGK-KAMMTKELNNGRLAMIATIGVWAQELVDGKTILGHLSG 239
            P FDPL ++SK   I++K+++E E+KH RVAMLA LG  V E+ HPLF     +IGP+I HFQ +    P    L +  +G+FE +NIY GWVKQ P++ G+A LK +Y  G FGFDPL L P  E  K + M  KELNNGRLAM A +G+WAQELV+GK +  ++ G
Sbjct:   46 PVFDPLGLASKVSDIELKRYQECELKHGRVAMLAVLGSLVAEVFHPLFPMS-FEIGPSIRHFQIIEREVPYFWILAMFGIGVFEADNIYRGWVKQDPIRDGIASLKDNYIVGDFGFDPLNLGPTSEPQKFELMRAKELNNGRLAMFAILGIWAQELVNGKGVFENILG 212

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BLAST of Ec-28_003120.1 vs. uniprot
Match: A0A7R9U0X8_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U0X8_9STRA)

HSP 1 Score: 157 bits (397), Expect = 2.160e-44
Identity = 88/172 (51.16%), Postives = 109/172 (63.37%), Query Frame = 0

Query:   63 VKTLAGASAPFPYFDPLEISSKFRAIDVKKFRESEIKHARVAMLAFLGMFVQELAHPLFENGGKDIGPAIVHFQAVTNYFPLMPALLLIIVGIFEGNNIYVGW--VKQPLKLG--VADLKPDYEPGSFGFDPLGLYPKDEAGKKAMMTKELNNGRLAMIATIGVWAQELVDG 230
            + ++ G+S+PFP FDPL +S+    + +KK++E+E+KH R+AMLA LG+ VQE  HPLF  GG   GPAI  FQ V N +PL        V   EG  I  GW  +++    G  VA LK DY PG  GFDPLGL PKDEAG   M TKELN+ RLAMI   G+ AQELV G
Sbjct:   33 LSSIPGSSSPFPGFDPLGLSTDLDDMTLKKYQEAELKHGRIAMLAALGILVQESFHPLF--GGAISGPAIFEFQQVDNVYPLFWVAFGTAVAFVEGTTINQGWESIRETKARGADVAGLKEDYTPGDIGFDPLGLCPKDEAGFAEMRTKELNHCRLAMIGVAGMVAQELVLG 202

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BLAST of Ec-28_003120.1 vs. uniprot
Match: D7G7Q9_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q9_ECTSI)

HSP 1 Score: 152 bits (385), Expect = 1.880e-42
Identity = 93/180 (51.67%), Postives = 107/180 (59.44%), Query Frame = 0

Query:   59 GPQYVKTLAGASAPFP---YFDPLEISSKFRAIDVKKFRESEIKHARVAMLAFLGMFVQELAHPLFENGGKD-IGPAIVHFQAVTNYFPLMPALLLIIVGIFEGNNIYVGWVKQPLKLGVADLKPDYEPGSFGFDPLGLYPKDEAGKKAMMTKELNNGRLAMIATIGVWAQELVDGKTIL 234
            G  YV TL GA  PF     FDPL +S      D+KK+RE+EIKH RVAMLA LG+ V E  HPLF   GKD IGPAI+HFQ ++  FP   A  L+ +   E N I   +       G   LK DY PG  GFDPL L P  EA    M TKELNNGRLAMI   G+ AQELV+G+ IL
Sbjct:   44 GSDYVATLPGA--PFSDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFM--GKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDGEAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDIL 219

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BLAST of Ec-28_003120.1 vs. uniprot
Match: D7G7S1_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S1_ECTSI)

HSP 1 Score: 149 bits (375), Expect = 5.470e-41
Identity = 87/180 (48.33%), Postives = 107/180 (59.44%), Query Frame = 0

Query:   59 GPQYVKTLAGASAPF---PYFDPLEISSKFRAIDVKKFRESEIKHARVAMLAFLGMFVQELAHPLFENGGKDIGPAIVHFQAVTNYFPLMPALLLIIVGIFEGNNIYVGWVKQPLKLGVADLKPDYEPGSFGFDPLGLYPKDEAGKKAMMTKELNNGRLAMIATIGVWAQELVDGKTILG 235
            G  YV TL GA  PF     FDPLE+S      ++K +RE+EIKH RVAMLA +G+ V E  HPLF  G   IGPA+ HFQ ++  FP   A  L+ +   E N I   + +     G   L+ +Y PG  GFDPL L PKD+AG + M TKELNNGRLAMI   G+  QELV+   ILG
Sbjct:   45 GSDYVATLPGA--PFGDGKIFDPLELSDGAEPGEIKLWREAEIKHGRVAMLATVGVIVAEQYHPLF-MGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTITKAYAEPSPVTGEGGLRDEYSPGDLGFDPLNLKPKDQAGLEKMQTKELNNGRLAMIGIAGMLVQELVNPADILG 221

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BLAST of Ec-28_003120.1 vs. uniprot
Match: A0A7S2QSU1_9EUKA (Hypothetical protein n=1 Tax=Norrisiella sphaerica TaxID=552664 RepID=A0A7S2QSU1_9EUKA)

HSP 1 Score: 151 bits (381), Expect = 9.510e-41
Identity = 85/187 (45.45%), Postives = 112/187 (59.89%), Query Frame = 0

Query:   60 PQYVKTLAGASAPFPYFDPLEISSKFR-AIDVKKFRESEIKHARVAMLAFLGMFVQELAHPLFENGGKDIGPAIVHFQAVTNYFPLMPALLLIIVGIFEGNNIYVGWVKQP-------LKLGVADLKPDYEPGSFGFDPLGLYPKDEAGKKAMMTKELNNGRLAMIATIGVWAQELVDGKTILGHLS 238
            P+ V  + G +    Y+DP+  +   R    VK+FRE+E+ H R+ ML  LG  VQE  HPLF  GGK  GPAI HFQ +T  +P     +L  +GI E     +GW K+P       L+  + DL+ +Y PG+ GFDPLGL+PKD    K +  KELNNGRLAM+A  G  AQELV+GK IL +L+
Sbjct:   77 PESVAEVGGTAPMGKYWDPVGFTDSVRNPSQVKRFREAELTHGRLGMLGVLGWLVQENFHPLF--GGKIDGPAIEHFQKITAQYPSFWIPVLSAIGIAELGRARIGW-KEPFDTKPGTLETNLFDLRDEYTPGNLGFDPLGLFPKDSQAAKNLQNKELNNGRLAMLALAGFMAQELVNGKPILENLN 260

The following BLAST results are available for this feature:

BLAST of Ec-28_003120.1 vs. uniprot

BLAST of Ec-28_003120.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LTR4_ECTSI	3.320e-169	100.00	Light harvesting complex protein n=2 Tax=Ectocarpu...	[more]
A0A835Z091_9STRA	9.250e-59	54.75	Fucoxanthin chlorophyll a/c binding protein n=1 Ta...	[more]
A0A835ZAU2_9STRA	1.500e-56	47.54	Light harvesting complex protein n=1 Tax=Tribonema...	[more]
A0A836CA40_9STRA	7.220e-52	50.55	Light harvesting complex protein n=2 Tax=Tribonema...	[more]
A0A835YMD9_9STRA	1.230e-48	49.44	Fucoxanthin chlorophyll a/c protein, LI818 clade n...	[more]
A0A836CGF9_9STRA	2.570e-48	51.19	Light harvesting complex protein n=1 Tax=Tribonema...	[more]
A0A7R9U0X8_9STRA	2.160e-44	51.16	Hypothetical protein n=2 Tax=Pinguiococcus pyrenoi...	[more]
D7G7Q9_ECTSI	1.880e-42	51.67	Light harvesting complex protein n=2 Tax=Ectocarpu...	[more]
D7G7S1_ECTSI	5.470e-41	48.33	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
A0A7S2QSU1_9EUKA	9.510e-41	45.45	Hypothetical protein n=1 Tax=Norrisiella sphaerica...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 65..226 e-value: 1.0E-33 score: 117.2
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10		coord: 55..239 e-value: 8.9E-37 score: 128.6
IPR001344	Chlorophyll A-B binding protein, plant	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 4..231
None	No IPR available	PANTHER	PTHR21649:SF63		coord: 4..231
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..17
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 4..12
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 18..239
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 13..17
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..3
None	No IPR available	SIGNALP_EUK	SignalP-noTM	SignalP-noTM	coord: 1..17 score: 0.475
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 61..237

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr_28	contig	chr_28:2948320..2954117 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR	2016-10-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Ec-28_003120.1	Ec-28_003120.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	mRNA	chr_28 2948320..2954117 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Ec-28_003120.1 ID=Ec-28_003120.1|Name=Ec-28_003120.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=240bp
MKTSCAVALASVATASGFMVPVATPTRSRTSLASGSAQFDEILQAPEAEE
PPPPIELTGPQYVKTLAGASAPFPYFDPLEISSKFRAIDVKKFRESEIKH
ARVAMLAFLGMFVQELAHPLFENGGKDIGPAIVHFQAVTNYFPLMPALLL
IIVGIFEGNNIYVGWVKQPLKLGVADLKPDYEPGSFGFDPLGLYPKDEAG
KKAMMTKELNNGRLAMIATIGVWAQELVDGKTILGHLSG*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR022796	Chloroa_b-bind
IPR023329	Chlorophyll_a/b-bd_dom_sf
IPR001344	Chloro_AB-bd_pln