Ec-28_003050.2 (polypeptide) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameEc-28_003050.2
Unique NameEc-28_003050.2
Typepolypeptide
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length809
Homology
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BLAST of Ec-28_003050.2 vs. uniprot
Match: D8LTS0_ECTSI (PPR_long domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTS0_ECTSI)

HSP 1 Score: 267 bits (682), Expect = 1.510e-74
Identity = 382/384 (99.48%), Postives = 382/384 (99.48%), Query Frame = 0 
Query:   66 HGDRSAEGAACARCHTSAVEAMATSGRWKEALALLKDMPRQGVRPDIHTYSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGMAGLWKEALGVMEEMVMDGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEARLAGIEVGASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKSGDGTVSSPVSGGRGRIGASGGGEDDPRDEGGEVLGAEPAGGKGLGGIRRWERVMPLVEEMQKAGYQPDLLSFNLALSACARRGDANRTLR 449
            H  RSAEGAACARCHTSAVEAMATSGRWKEALALLKDMPRQGVRPDIHTYSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGMAGLWKEALGVMEEMVMDGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEARLAGIEVGASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKSGDGTVSSPVSGGRGRIGASGGGEDDPRDEGGEVLGAEPAGGKGLGGIRRWERVMPLVEEMQKAGYQPDLLSFNLALSACARRGDANRTLR
Sbjct:  151 HALRSAEGAACARCHTSAVEAMATSGRWKEALALLKDMPRQGVRPDIHTYSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGMAGLWKEALGVMEEMVMDGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEARLAGIEVGASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKSGDGTVSSPVSGGRGRIGASGGGEDDPRDEGGEVLGAEPAGGKGLGGIRRWERVMPLVEEMQKAGYQPDLLSFNLALSACARRGDANRTLR 534
The following BLAST results are available for this feature:
BLAST of Ec-28_003050.2 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LTS0_ECTSI1.510e-7499.48PPR_long domain-containing protein n=2 Tax=Ectocar... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 667..694
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 409..598
coord: 81..267
coord: 196..351
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 9..28
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 29..808
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..8
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 430..457
e-value: 1.3
score: 9.4
coord: 168..197
e-value: 0.0039
score: 17.3
coord: 274..302
e-value: 0.0025
score: 17.9
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 274..304
e-value: 0.0012
score: 16.9
coord: 499..532
e-value: 2.5E-5
score: 22.2
coord: 202..236
e-value: 1.5E-6
score: 26.0
coord: 167..201
e-value: 9.3E-6
score: 23.5
coord: 79..112
e-value: 2.0E-4
score: 19.3
coord: 238..270
e-value: 0.0032
score: 15.5
coord: 308..342
e-value: 2.1E-9
score: 35.0
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 86..122
e-value: 2.3E-7
score: 30.9
coord: 199..247
e-value: 1.3E-10
score: 41.3
coord: 306..351
e-value: 6.7E-11
score: 42.2
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 306..340
score: 12.737
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 165..199
score: 9.92
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 236..270
score: 9.394
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 111..141
score: 9.175
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 497..531
score: 11.323
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 401..426
score: 5.152
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 271..305
score: 9.558
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 532..566
score: 9.317
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 76..110
score: 9.701
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 567..601
score: 5.7
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 462..496
score: 9.054
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 427..461
score: 9.745
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 200..234
score: 10.26
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 513..704
e-value: 5.7E-19
score: 70.8
coord: 71..157
e-value: 8.0E-15
score: 57.2
coord: 253..366
e-value: 6.4E-28
score: 100.2
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 158..252
e-value: 5.3E-26
score: 93.1
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 401..512
e-value: 4.3E-23
score: 84.1
IPR033443Pentacotripeptide-repeat region of PRORPPFAMPF17177PPR_longcoord: 466..590
e-value: 2.9E-7
score: 30.1

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_28contigchr_28:2871822..2879753 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-28_003050.2Ec-28_003050.2Ectocarpus species7 Ec32 male_plus_femaleSDRmRNAchr_28 2870000..2880974 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ec-28_003050.2 ID=Ec-28_003050.2|Name=Ec-28_003050.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=809bp
MMDFPFPPSILYICAGLMSSVLVLPPLLRCLCHYSVVSARLSVSNNPNPL
HPPTQRRFTPPRPNAHGDRSAEGAACARCHTSAVEAMATSGRWKEALALL
KDMPRQGVRPDIHTYSAAMRACRAAGRTGEALSLLETMRRSARGERERGG
DAESGEANAASLRPDAFCFNICIDACAKGRLHERAKALLGVMRSDGVSPD
VVSFNSVINALGMAGLWKEALGVMEEMVMDGGVTPNSVTYASAINACGNS
RQLDRALGLLKEARLAGIEVGASAYNAAIAACGHAGSADEALPLLKEMEE
RRVPRTVITYSSLIDVCGKGGLPDEALNLFQKMISEGILPNAITYNALIH
ASAGGGLKSGDGTVSSPVSGGRGRIGASGGGEDDPRDEGGEVLGAEPAGG
KGLGGIRRWERVMPLVEEMQKAGYQPDLLSFNLALSACARRGDANRTLRL
LGDMRRADLLPTTYSFSSAVKSCERAGKADEVLALLGRMKSGGVSRTLIT
FNSALLACAKDGRREDSLRILSEMKKEGVSPDGKSFRLAMQACGRAGDPA
GALVILRGMAKAGIPPGDRSFASAMEAFALAGDVETVLSLVKEARAASLS
GDGKPYWSSTLTGAKACAAAGRSADAVGLLRDLPPDSDDDDLCPDRRSPP
VAVVLEAESEMPARRGYHQQQQQQQQQQQQHQQQQQKYQQHQHQQESQHQ
QRPLLGADHAPEAAAAAAATNITSTASSTAFFTTVGRRERAWSETLWSAA
ANGQASAMLELLVAIREEEEGLLKLTGAHYVYNKALRLLADSFRTAGPPG
RSAESVRT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf
IPR033443PPR_long