Ec-27_003660.1 (polypeptide) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameEc-27_003660.1
Unique NameEc-27_003660.1
Typepolypeptide
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length216
Homology
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BLAST of Ec-27_003660.1 vs. uniprot
Match: D8LBK1_ECTSI (RRM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBK1_ECTSI)

HSP 1 Score: 339 bits (870), Expect = 1.670e-116
Identity = 215/215 (100.00%), Postives = 215/215 (100.00%), Query Frame = 0 
Query:    1 MSRVGIVSSVELETMTTTGMHNGRGVVVYETAKGARDALRGFNDKTMVIDARLVAVATTKWPTVGHFAATINHCGRSRRGPQVELTQAGAVVLACSTLLGDGDGXXXXXXXXXXXXXXXXXXXXXXXXXXSGKDGPPTXXXXXXXXXXEGDGRTVAVGRVPRRTTKKELREHFETVASVEAVSLVTGKGKLPQEGYVTFMTQAGASKAVQYLDGS 215
            MSRVGIVSSVELETMTTTGMHNGRGVVVYETAKGARDALRGFNDKTMVIDARLVAVATTKWPTVGHFAATINHCGRSRRGPQVELTQAGAVVLACSTLLGDGDGXXXXXXXXXXXXXXXXXXXXXXXXXXSGKDGPPTXXXXXXXXXXEGDGRTVAVGRVPRRTTKKELREHFETVASVEAVSLVTGKGKLPQEGYVTFMTQAGASKAVQYLDGS
Sbjct:    1 MSRVGIVSSVELETMTTTGMHNGRGVVVYETAKGARDALRGFNDKTMVIDARLVAVATTKWPTVGHFAATINHCGRSRRGPQVELTQAGAVVLACSTLLGDGDGXXXXXXXXXXXXXXXXXXXXXXXXXXSGKDGPPTXXXXXXXXXXEGDGRTVAVGRVPRRTTKKELREHFETVASVEAVSLVTGKGKLPQEGYVTFMTQAGASKAVQYLDGS 215
The following BLAST results are available for this feature:
BLAST of Ec-27_003660.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LBK1_ECTSI1.670e-116100.00RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 156..214
e-value: 7.4E-10
score: 38.5
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 153..215
score: 11.384
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 106..215
e-value: 1.8E-12
score: 49.5
NoneNo IPR availablePANTHERPTHR23003RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEINcoord: 5..215
NoneNo IPR availablePANTHERPTHR23003:SF3FI21236P1coord: 5..215
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 119..214

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_27contigchr_27:3182053..3185191 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-27_003660.1Ec-27_003660.1Ectocarpus species7 Ec32 male_plus_femaleSDRmRNAchr_27 3182053..3185191 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ec-27_003660.1 ID=Ec-27_003660.1|Name=Ec-27_003660.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=216bp
MSRVGIVSSVELETMTTTGMHNGRGVVVYETAKGARDALRGFNDKTMVID
ARLVAVATTKWPTVGHFAATINHCGRSRRGPQVELTQAGAVVLACSTLLG
DGDGGGGASSGGGDGGYKKRGRRKGRNRTASGKDGPPTKRARGGGGGGEG
DGRTVAVGRVPRRTTKKELREHFETVASVEAVSLVTGKGKLPQEGYVTFM
TQAGASKAVQYLDGS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf