Ec-27_003090.1 (polypeptide) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameEc-27_003090.1
Unique NameEc-27_003090.1
Typepolypeptide
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length124
Homology
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BLAST of Ec-27_003090.1 vs. uniprot
Match: D8LBQ7_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBQ7_ECTSI)

HSP 1 Score: 59.7 bits (143), Expect = 5.790e-9
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 0 
Query:    1 MTTALGKLTVLETLYLRDNHLTGSIPKEL 29
            MTTALGKLTVLETLYLRDNHLTGSIPKEL
Sbjct:    1 MTTALGKLTVLETLYLRDNHLTGSIPKEL 29
The following BLAST results are available for this feature:
BLAST of Ec-27_003090.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LBQ7_ECTSI5.790e-9100.00Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 1..122
e-value: 1.3E-37
score: 131.3
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 11..69
e-value: 7.1E-8
score: 32.1
NoneNo IPR availablePANTHERPTHR46662FAMILY NOT NAMEDcoord: 4..74
NoneNo IPR availablePANTHERPTHR46662FAMILY NOT NAMEDcoord: 56..119
NoneNo IPR availablePANTHERPTHR46662:SF8coord: 56..119
NoneNo IPR availablePANTHERPTHR46662:SF8coord: 4..74
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 4..120

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_27contigchr_27:2722026..2724154 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-27_003090.1Ec-27_003090.1Ectocarpus species7 Ec32 male_plus_femaleSDRmRNAchr_27 2722026..2724154 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ec-27_003090.1 ID=Ec-27_003090.1|Name=Ec-27_003090.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=124bp
MTTALGKLTVLETLYLRDNHLTGSIPKELGALGKLKLLWLSINNLTGHIP
KELGDLSRLERLRLGGNQLDGGIPASLGQLDKLQKLFLNHNRLSGPIPKD
LGYLRALTHVALFDNELTGKHDC*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf
IPR001611Leu-rich_rpt