Ec-27_003060.1 (polypeptide) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Ec-27_003060.1
Unique Name	Ec-27_003060.1
Type	polypeptide
Organism	Ectocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length	337

Homology

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BLAST of Ec-27_003060.1 vs. uniprot
Match: A0A6H5JTU3_9PHAE (tRNA-intron lyase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTU3_9PHAE)

HSP 1 Score: 524 bits (1350), Expect = 1.640e-185
Identity = 293/339 (86.43%), Postives = 300/339 (88.50%), Query Frame = 0

Query:    2 LTAGAAARGSGRRPRVHVVDGRVLVYDPASAATLLSEHRIWATPVGVRRARNKSPEHSFPCVLSPEQATLVLRRRLADVFYPCHSSASEAGCHGHETLEERHSDDGDGGAEEQEEANVPMTTKKVCHDPPRLLDSEWRFPETAVETKSMAVFEDLWAKGLCPASGSNYAADFVVYNGPPTERHSIAAVIVSRGANDELSPAEVSGFTRVQQAVGKRAVIATAPLTTNGTSPVVVGATXXXXXXXXXXXXVAPRGSERKPTGVEVRTSTPRRHEGGQETASGTVSGTASK----EPPXXXXXXXXXXXXXXXXXXXXXXXXANEGVRYITLQFHSVSSRV 336
            LTAGAAARGSGRRP+VHVVDGRVLVYDPASAATLLSEHRIWATPVGVRRARNKSPEHSFPCVLSPEQATLVLRRRLADVFYP HSSASE GCHGHETLEERHSDDGDGGAEEQE+ANVPMTTKKVCHDPPR LDS+WRFPETAV TKS AVFEDLWAKGLCPASGSNYAADFVVYNGPPTERHSIAAVIVSRGANDELSPAE+SGF RVQQAVGKRAVIATAPL TN TSP+VV A             VAPRGSE KPTGVE RTSTPRRHEGGQETASGTV GTAS+    + P       XXXXXXXXXXXXXXX  ANEGVRYITLQFHSVSSRV
Sbjct:    6 LTAGAAARGSGRRPQVHVVDGRVLVYDPASAATLLSEHRIWATPVGVRRARNKSPEHSFPCVLSPEQATLVLRRRLADVFYPRHSSASETGCHGHETLEERHSDDGDGGAEEQEDANVPMTTKKVCHDPPRSLDSKWRFPETAVGTKSTAVFEDLWAKGLCPASGSNYAADFVVYNGPPTERHSIAAVIVSRGANDELSPAELSGFARVQQAVGKRAVIATAPLATNDTSPMVVEANTLASAAVATAAVVAPRGSEGKPTGVEGRTSTPRRHEGGQETASGTVLGTASEKLPTQAPAAANAVAXXXXXXXXXXXXXXXTPANEGVRYITLQFHSVSSRV 344

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BLAST of Ec-27_003060.1 vs. uniprot
Match: D8LBR0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBR0_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 1.330e-23
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 0

Query:    1 MLTAGAAARGSGRRPRVHVVDGRVLVYDPASAATLLSEHRIWATPVGVRR 50
            MLTAGAAARGSGRRPRVHVVDGRVLVYDPASAATLLSEHRIWATPVGVRR
Sbjct:    1 MLTAGAAARGSGRRPRVHVVDGRVLVYDPASAATLLSEHRIWATPVGVRR 50

The following BLAST results are available for this feature:

BLAST of Ec-27_003060.1 vs. uniprot

BLAST of Ec-27_003060.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5JTU3_9PHAE	1.640e-185	86.43	tRNA-intron lyase n=1 Tax=Ectocarpus sp. CCAP 1310...	[more]
D8LBR0_ECTSI	1.330e-23	100.00	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006677	tRNA intron endonuclease, catalytic domain-like	PFAM	PF01974	tRNA_int_endo	coord: 149..223 e-value: 2.4E-12 score: 46.7
IPR011856	tRNA endonuclease-like domain superfamily	GENE3D	3.40.1350.10		coord: 147..234 e-value: 3.7E-14 score: 54.6
None	No IPR available	PANTHER	PTHR13070	TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN34-RELATED	coord: 13..106 coord: 131..224
IPR036167	tRNA intron endonuclease, catalytic domain-like superfamily	SUPERFAMILY	53032	tRNA-intron endonuclease catalytic domain-like	coord: 150..224

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr_27	contig	chr_27:2693306..2700083 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR	2016-10-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Ec-27_003060.1	Ec-27_003060.1	Ectocarpus species7 Ec32 male_plus_femaleSDR	mRNA	chr_27 2693306..2700083 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Ec-27_003060.1 ID=Ec-27_003060.1|Name=Ec-27_003060.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=337bp
MLTAGAAARGSGRRPRVHVVDGRVLVYDPASAATLLSEHRIWATPVGVRR
ARNKSPEHSFPCVLSPEQATLVLRRRLADVFYPCHSSASEAGCHGHETLE
ERHSDDGDGGAEEQEEANVPMTTKKVCHDPPRLLDSEWRFPETAVETKSM
AVFEDLWAKGLCPASGSNYAADFVVYNGPPTERHSIAAVIVSRGANDELS
PAEVSGFTRVQQAVGKRAVIATAPLTTNGTSPVVVGATTLASAAAAAAAV
VAPRGSERKPTGVEVRTSTPRRHEGGQETASGTVSGTASKEPPTPAPAAA
DAAAATAAAAAAAAAAAANEGVRYITLQFHSVSSRV*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR006677	tRNA_intron_Endonuc_cat-like
IPR011856	tRNA_endonuc-like_dom_sf
IPR036167	tRNA_intron_Endo_cat-like_sf