Ec-00_004250.2 (polypeptide) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameEc-00_004250.2
Unique NameEc-00_004250.2
Typepolypeptide
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length181
Homology
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BLAST of Ec-00_004250.2 vs. uniprot
Match: D8LMM4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMM4_ECTSI)

HSP 1 Score: 126 bits (316), Expect = 3.370e-34
Identity = 60/67 (89.55%), Postives = 62/67 (92.54%), Query Frame = 0 
Query:    2 KTCTIACSTQVGKDGTQADILRAMHMHVLFIVLGVNGFEGVMEVLGAGRLSVGPLPLIPLCSVARQR 68
            K CTIACST+VGKDGTQ D L AMHMHVLF+ LGVNGFEGVMEVLGAGRLSVGPLPLIPLCSVARQR
Sbjct:   56 KDCTIACSTRVGKDGTQPDTLHAMHMHVLFVALGVNGFEGVMEVLGAGRLSVGPLPLIPLCSVARQR 122
The following BLAST results are available for this feature:
BLAST of Ec-00_004250.2 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LMM4_ECTSI3.370e-3489.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 160..180
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 98..135
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 50..69
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..28
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 29..49
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 70..97
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 136..159
NoneNo IPR availableTMHMMTMhelixcoord: 135..157
NoneNo IPR availableTMHMMTMhelixcoord: 76..98

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr_00contigchr_00:5684829..5685371 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-00_004250.2Ec-00_004250.2Ectocarpus species7 Ec32 male_plus_femaleSDRmRNAchr_00 5682098..5688824 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ec-00_004250.2 ID=Ec-00_004250.2|Name=Ec-00_004250.2|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=181bp
MKTCTIACSTQVGKDGTQADILRAMHMHVLFIVLGVNGFEGVMEVLGAGR
LSVGPLPLIPLCSVARQRCIVLLLDFMFCSSGSHGLYFVFVLFSYILGRR
GLEWEDDLTALPRSRLLVLENTRDIFLLSHPNTDGVALSSCMLCFCWMGV
GTLHSFGTLGKATRFFRSLLEGSRRSNNCF*
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