Ec-sdr_f_000160.1 (mRNA) Ectocarpus species7 Ec32 male_plus_femaleSDR

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEc-sdr_f_000160.1
Unique NameEc-sdr_f_000160.1
TypemRNA
OrganismEctocarpus species7 Ec32 male_plus_femaleSDR (Ectocarpus species7 Ec32 male_plus_femaleSDR)
Sequence length180
Homology
The following BLAST results are available for this feature:
BLAST of Ec-sdr_f_000160.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sdr_fcontigsdr_f:619670..622033 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Ectocarpus species7 Ec32 male_plus_femaleSDR2016-10-08
Properties
Property NameValue
Length542
Hectar predicted targeting categoryother localisation
Gene idEc-sdr_f_000160.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ec-sdr_f_000160Ec-sdr_f_000160Ectocarpus species7 Ec32 male_plus_femaleSDRgenesdr_f 619670..622033 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-sdr_f_000160.1.3Ec-sdr_f_000160.1.3Ectocarpus species7 Ec32 male_plus_femaleSDRexonsdr_f 619670..619776 -
Ec-sdr_f_000160.1.2Ec-sdr_f_000160.1.2Ectocarpus species7 Ec32 male_plus_femaleSDRexonsdr_f 620710..621081 -
Ec-sdr_f_000160.1.1Ec-sdr_f_000160.1.1Ectocarpus species7 Ec32 male_plus_femaleSDRexonsdr_f 621971..622033 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-sdr_f_000160.1CDS:Ec-sdr_f_000160.1Ectocarpus species7 Ec32 male_plus_femaleSDRCDSsdr_f 619670..619776 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ec-sdr_f_000160.1Ec-sdr_f_000160.1Ectocarpus species7 Ec32 male_plus_femaleSDRpolypeptidesdr_f 619670..622033 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ec-sdr_f_000160.1 ID=Ec-sdr_f_000160.1|Name=Ec-sdr_f_000160.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=180bp
MLMGATKMEFSFLQRSHASTAQDTLQLEEALSLAALTRRSRRHLNEPWTM
AEFGEHGALHCVNSRRRTNETTAGFEMGEIVAAGKDMAGGDLELMVHQRP
PDHHARTRNTPTMANVAVRSVGQIRQKGAPRVHRELNVVRAGFRELLGLA
QARAAKVAERMMTRSARTCIAAQRKTMQVR
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spliced messenger RNA

>Ec-sdr_f_000160.1 ID=Ec-sdr_f_000160.1|Name=Ec-sdr_f_000160.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=542bp|location=Sequence derived from alignment at sdr_f:619670..622033- (Ectocarpus species7 Ec32 male_plus_femaleSDR)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGATGGGTGCGACAAAAATGGAGTTTAGTTTTCTTCAACGGAGCCA
TGCCAGCACAGCGCAGGATACTCTACAACTCGAGGAAGCTTTGTCATTGG
CAGCGTTGACACGACGAAGCCGTCGGCATTTGAATGAGCCTTGGACGATG
GCAGAATTCGGTGAACATGGAGCGCTACACTGCGTGAATTCGCGCAGAAG
AACCAATGAAACAACGGCTGGCTTCGAAATGGGTGAAATAGTTGCTGCTG
GCAAGGACATGGCTGGTGGCGATTTGGAACTGATGGTGCATCAACGACCG
CCGGATCATCATGCTCGTACACGTAATACCCCAACAATGGCGAACGTTGC
GGTGCGATCCGTGGGCCAGATCCGGCAGAAGGGAGCGCCTAGAGTTCATC
GCGAATTGAACGTCGTACGTGCAGGGTTCCGTGAGTTACTGGGGCTAGCA
CAAGCACGAGCCGCCAAAGTGGCAGAACGCATGATGACTAGGTCTGCGCG
GACTTGTATCGCTGCACAGAGAAAGACTATGCAGGTGAGAGC
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protein sequence of Ec-sdr_f_000160.1

>Ec-sdr_f_000160.1 ID=Ec-sdr_f_000160.1|Name=Ec-sdr_f_000160.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=polypeptide|length=180bp
MLMGATKMEFSFLQRSHASTAQDTLQLEEALSLAALTRRSRRHLNEPWTM
AEFGEHGALHCVNSRRRTNETTAGFEMGEIVAAGKDMAGGDLELMVHQRP
PDHHARTRNTPTMANVAVRSVGQIRQKGAPRVHRELNVVRAGFRELLGLA
QARAAKVAERMMTRSARTCIAAQRKTMQVR
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mRNA from alignment at sdr_f:619670..622033-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ec-sdr_f_000160.1 ID=Ec-sdr_f_000160.1|Name=Ec-sdr_f_000160.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=mRNA|length=2364bp|location=Sequence derived from alignment at sdr_f:619670..622033- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCTGATGGGTGCGACAAAAATGGAGTTTAGTTTTCTTCAACGGAGCCA
TGCCAGCACAGCGGTGAGGGCGAAGCCATGCGAAACCTCTTTGGCCAATC
AGGTTCTACCCTGGCCACCCGTTGTGACAAGTTCGTTTACCCCCTGATCT
GTCTGTGTCATCGCGCATTTTCCAACGTGCCAACTACATGTAGCCAAATG
ACAGAGGTAAATTTTCCAACTGCGACATATCGTAGCAGCAAACACACCTC
ATGATAGCAGTGTTTCACCTAAATCGCTAACAAGAAGGCACTAAATTCGT
GACCCGTGCCACGCATACGGCGATAGAAGCTAAGATACGGGGTACAACAA
CCGCTGTTCATCTTCGCGGCAAGCGGTGGTGTACACATGTGTGCACGGCA
AGCAGTCCCAGGCGACACAAATGTGCATCGAAGATTTCACACACACCGGA
GGAGCCTTGCATAGTTGTGCCGGAGTCAAAGACTATCGTTACACGAAACC
GAGCGAGGGAGCGAGAGGCACAATACAACCACCTCTGCATTGTCGAGGAT
AGCTCCATCTCTGCATACGCATGACTCGGGCGTCTACACGGATGCGCCCG
TGTTTCACTCTGAGGATCTTCGTAAATCAAATCGAGCGTGGGCTCAGAGC
TGCGACACTTGTTTAAGTCCATATAGCGAACGCCCAGGCAACGATGTAGC
CTTTGTCAAAACGCCGCGTGCACGTGGGTAATGAACCTGCAATGAGGTAA
ATTCTTCTCACCGCTAGTCCAGTGGCGATTGATGCCCCGGGGGACTTTCG
CCCCTTATCGCGTGTAGGGTAGGAATACCAATTTTAGGTCATTGACTCCT
GCACATGGTTAACACCATTTGAGATATTGACCGCAGCTACAATATTGTCA
GCATCTCTGGAGACGGAAACCTCGTGCTCCGTCTGAACTTGACTGCGAAC
AGCAGGATACTCTACAACTCGAGGAAGCTTTGTCATTGGCAGCGTTGACA
CGACGAAGCCGTCGGCATTTGAATGAGCCTTGGACGATGGCAGAATTCGG
TGAACATGGAGCGCTACACTGCGTGAATTCGCGCAGAAGAACCAATGAAA
CAACGGCTGGCTTCGAAATGGGTGAAATAGTTGCTGCTGGCAAGGACATG
GCTGGTGGCGATTTGGAACTGATGGTGCATCAACGACCGCCGGATCATCA
TGCTCGTACACGTAATACCCCAACAATGGCGAACGTTGCGGTGCGATCCG
TGGGCCAGATCCGGCAGAAGGGAGCGCCTAGAGTTCATCGCGAATTGAAC
GTCGTACGTGCAGGGTTCCGTGAGGTGAAACAGGTGGATGTGTTAATTAC
CATCAAAACACATAGACCCACAACTCGGAGACCTGGGTCCGCCGGCTGTG
TGCGTGCGTGATTCCAGAGGGGAGGGCACGTATACATTCAGACATCCCCG
GGTAACCAACGAAGTTGTATCCGCTGAGAGATTACAGCGGCCAGAAACCA
CCAGGCTTGTGTTTACAAGCTGCTCATGCATACCCCGATGGACCGTCTGG
AGCTGCCCCTCAGCCTGTCACCTGTCTGGCCGAGTGATCTGCGGAACACG
GCTTGCTTGCTTGGCTCTCCACTTCGGGAAAGACTGTTGTAGGTTGAGTA
GTCGTTCTTCTTGGCAGCCAAACTACGTACATATGGAGACAACATATTTG
CTCCGTAGAACACCTTGTTACAGCCCCTATATTCTCGAACAGAAATCGGC
GATGATACAACTATTCCCCGCGAGCGCTGTCTACATAAATCTACTAGGTG
CACACTCAAACTAGTTGTTGTCGTGTCTTAGCATTGCCGTGTCAAGCAGG
AGAAGTGGACATCCGAAGGTTTCAAACGCTCACGGAATGGCTCGGTATTT
TTCATTGCCTTTTTTTCGAGATCCCGGGGGCATTTGTCCTGGACTTTTCA
CGTGCCCATACAAAACGCGCGTCCACTTAAGAATGTTGTCTTATCCCAGG
CTGGTTTCTTATTTCCTCGGTAGGGTAACATCGACTATATAGTGGGTTTT
GGAGGATTCTTAACTTGGCATCGGCGCTCATGATGAAGTTCTTATTATTT
TCCTCTTGTGCCGGAATCTCTTGTCTCCCAGGTTCTTGAGGCGTACCACA
AATTGGGGAGATCAAAAAGAGCGGCAAATTTAAATCGCATCACCCGCGTT
TAAATCGCTACACCCTTTTTTAAATCGCTACACCCTTGATCGAATACTCT
TACACAGTTACTGGGGCTAGCACAAGCACGAGCCGCCAAAGTGGCAGAAC
GCATGATGACTAGGTCTGCGCGGACTTGTATCGCTGCACAGAGAAAGACT
ATGCAGGTGAGAGC
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Coding sequence (CDS) from alignment at sdr_f:619670..622033-

>Ec-sdr_f_000160.1 ID=Ec-sdr_f_000160.1|Name=Ec-sdr_f_000160.1|organism=Ectocarpus species7 Ec32 male_plus_femaleSDR|type=CDS|length=542bp|location=Sequence derived from alignment at sdr_f:619670..622033- (Ectocarpus species7 Ec32 male_plus_femaleSDR)
ATGCTGATGGGTGCGACAAAAATGGAGTTTAGTTTTCTTCAACGGAGCCA
TGCCAGCACAGCGCAGGATACTCTACAACTCGAGGAAGCTTTGTCATTGG
CAGCGTTGACACGACGAAGCCGTCGGCATTTGAATGAGCCTTGGACGATG
GCAGAATTCGGTGAACATGGAGCGCTACACTGCGTGAATTCGCGCAGAAG
AACCAATGAAACAACGGCTGGCTTCGAAATGGGTGAAATAGTTGCTGCTG
GCAAGGACATGGCTGGTGGCGATTTGGAACTGATGGTGCATCAACGACCG
CCGGATCATCATGCTCGTACACGTAATACCCCAACAATGGCGAACGTTGC
GGTGCGATCCGTGGGCCAGATCCGGCAGAAGGGAGCGCCTAGAGTTCATC
GCGAATTGAACGTCGTACGTGCAGGGTTCCGTGAGTTACTGGGGCTAGCA
CAAGCACGAGCCGCCAAAGTGGCAGAACGCATGATGACTAGGTCTGCGCG
GACTTGTATCGCTGCACAGAGAAAGACTATGCAGGTGAGAGC
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Synonyms
The feature 'Ec-sdr_f_000160.1' has the following synonyms
Synonym
FeV4scaf27_1